mRNA_14907 (mRNA) Tribonema minus UTEX_B_3156
You are viewing an mRNA, more information available on the corresponding polypeptide page
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Overview
Homology
BLAST of jgi.p|Trimin1|101520 vs. uniprot
Match: A0A836C7T2_9STRA (Histone acetyltransferase subunit NuA4-domain-containing protein n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A836C7T2_9STRA) HSP 1 Score: 202 bits (515), Expect = 3.800e-64 Identity = 119/119 (100.00%), Postives = 119/119 (100.00%), Query Frame = 3 Query: 135 MAPAAAELEKEIKALAEKKTSLDREVHQIETQIHQLERSYLADTAPYGNVIEGWEKYHQHREQGTGSKQXXXXXXXXAAKMIFSLSSVTSPASQEQRPQQAAQAQHEQRSAKQREKRKR 491
MAPAAAELEKEIKALAEKKTSLDREVHQIETQIHQLERSYLADTAPYGNVIEGWEKYHQHREQGTGSKQXXXXXXXXAAKMIFSLSSVTSPASQEQRPQQAAQAQHEQRSAKQREKRKR
Sbjct: 1 MAPAAAELEKEIKALAEKKTSLDREVHQIETQIHQLERSYLADTAPYGNVIEGWEKYHQHREQGTGSKQXXXXXXXXAAKMIFSLSSVTSPASQEQRPQQAAQAQHEQRSAKQREKRKR 119
BLAST of jgi.p|Trimin1|101520 vs. uniprot
Match: A0A7M7RHK2_STRPU (Chromatin modification-related protein MEAF6 n=1 Tax=Strongylocentrotus purpuratus TaxID=7668 RepID=A0A7M7RHK2_STRPU) HSP 1 Score: 57.0 bits (136), Expect = 1.080e-6 Identity = 33/89 (37.08%), Postives = 50/89 (56.18%), Query Frame = 3 Query: 147 AAELEKEIKALAEKKTSLDREVHQIETQIHQLERSYLADTAPYGNVIEGWEKYHQHREQGTGSKQXXXXXXXXAAKMIFSLSSVTSPAS 413
A++ E+ L +++T + + +E QI+ E SYL DTA YGN+I GW++Y ++ T SK A +FS SS+TS AS
Sbjct: 9 ASDTRTELAELVKRRTEIAETLANLERQIYAFEGSYLEDTALYGNIIRGWDRYLTNKS--TNSKTDKRNRKFKEADRLFSKSSITSQAS 95
BLAST of jgi.p|Trimin1|101520 vs. uniprot
Match: UPI001BB1E1B2 (chromatin modification-related protein MEAF6-like n=1 Tax=Lytechinus variegatus TaxID=7654 RepID=UPI001BB1E1B2) HSP 1 Score: 56.2 bits (134), Expect = 2.230e-6 Identity = 33/92 (35.87%), Postives = 51/92 (55.43%), Query Frame = 3 Query: 138 APAAAELEKEIKALAEKKTSLDREVHQIETQIHQLERSYLADTAPYGNVIEGWEKYHQHREQGTGSKQXXXXXXXXAAKMIFSLSSVTSPAS 413
A A++ E+ L ++++ + + +E QI+ E SYL DTA YGN+I GW++Y ++ T SK A +FS SS+TS AS
Sbjct: 11 AQQASDTRTELAELVKRRSEIAETLANLERQIYAFEGSYLEDTALYGNIIRGWDRYLTNKS--TNSKTDKRNRKFKEADRLFSKSSITSQAS 100
BLAST of jgi.p|Trimin1|101520 vs. uniprot
Match: UPI0014258D70 (chromatin modification-related protein MEAF6-like n=1 Tax=Anneissia japonica TaxID=1529436 RepID=UPI0014258D70) HSP 1 Score: 55.8 bits (133), Expect = 2.910e-6 Identity = 31/85 (36.47%), Postives = 47/85 (55.29%), Query Frame = 3 Query: 150 AELEKEIKALAEKKTSLDREVHQIETQIHQLERSYLADTAPYGNVIEGWEKYHQHREQGTGSKQXXXXXXXXAAKMIFSLSSVTS 404
A+ E+ L +++T + + +E QI+ E SYL DTA YGN+I GW++Y ++ T SK A +FS SS+TS
Sbjct: 11 ADTRSELSELVKRRTEIAETLANLERQIYAFEGSYLEDTALYGNIIRGWDRYLTNKN--TNSKTDKRNRKFKEADRLFSKSSITS 93
BLAST of jgi.p|Trimin1|101520 vs. uniprot
Match: A0A7I4Z5B6_HAECO (Chromatin modification-related protein MEAF6 n=2 Tax=Strongylida TaxID=6308 RepID=A0A7I4Z5B6_HAECO) HSP 1 Score: 54.7 bits (130), Expect = 3.990e-6 Identity = 32/90 (35.56%), Postives = 48/90 (53.33%), Query Frame = 3 Query: 153 ELEKEIKALAEKKTSLDREVHQIETQIHQLERSYLADTAPYGNVIEGWEKYHQHREQGTGS----KQXXXXXXXXAAKMIFSLSSVTSPA 410
+L++E+ L +K+ + + +E QI+ E SYL +TA YGNVI+GW++Y K+ A +FS SSVTSPA
Sbjct: 7 DLKRELNELIKKRAEIAETLEALENQIYNFEGSYLEETAEYGNVIKGWDRYALAMPPSKSGVKLDKKTLSRKADKEADRLFSYSSVTSPA 96
BLAST of jgi.p|Trimin1|101520 vs. uniprot
Match: A0A0N4W403_HAEPC (Chromatin modification-related protein MEAF6 n=2 Tax=Trichostrongyloidea TaxID=6314 RepID=A0A0N4W403_HAEPC) HSP 1 Score: 54.7 bits (130), Expect = 3.990e-6 Identity = 32/90 (35.56%), Postives = 48/90 (53.33%), Query Frame = 3 Query: 153 ELEKEIKALAEKKTSLDREVHQIETQIHQLERSYLADTAPYGNVIEGWEKYHQHREQGTGS----KQXXXXXXXXAAKMIFSLSSVTSPA 410
+L++E+ L +K+ + + +E QI+ E SYL +TA YGNVI+GW++Y K+ A +FS SSVTSPA
Sbjct: 7 DLKRELNELIKKRAEIAETLEALENQIYNFEGSYLEETAEYGNVIKGWDRYALAMPPSKSGVKLDKKTLSRKADREADRLFSYSSVTSPA 96
BLAST of jgi.p|Trimin1|101520 vs. uniprot
Match: A0A2R6PKK4_ACTCC (Chromatin modification-related protein n=1 Tax=Actinidia chinensis var. chinensis TaxID=1590841 RepID=A0A2R6PKK4_ACTCC) HSP 1 Score: 54.7 bits (130), Expect = 5.010e-6 Identity = 33/89 (37.08%), Postives = 50/89 (56.18%), Query Frame = 3 Query: 156 LEKEIKALAEKKTSLDREVHQIETQIHQLERSYLADTAPYGNVIEGWEKYHQHREQGTGSKQXXXXXXXXAAKMIFSLSSVTSPASQEQ 422
LE + +L K+ L +E+H IE Q+++LE SYL ++ +GN +G++ + K+ IFSLSSVTSPAS+EQ
Sbjct: 12 LEATLASLVSKRQKLQQELHNIEKQVYELETSYLQESTNFGNAFKGFDGFLSASRNTANLKRSRRFLPDDR---IFSLSSVTSPASEEQ 97
BLAST of jgi.p|Trimin1|101520 vs. uniprot
Match: W2SJL3_NECAM (Chromatin modification-related protein MEAF6 n=1 Tax=Necator americanus TaxID=51031 RepID=W2SJL3_NECAM) HSP 1 Score: 53.9 bits (128), Expect = 6.870e-6 Identity = 32/90 (35.56%), Postives = 48/90 (53.33%), Query Frame = 3 Query: 153 ELEKEIKALAEKKTSLDREVHQIETQIHQLERSYLADTAPYGNVIEGWEKYHQHREQGTGS----KQXXXXXXXXAAKMIFSLSSVTSPA 410
+L++E+ L +K+ + + +E QI+ E SYL +TA YGNVI+GW++Y K+ A +FS SSVTSPA
Sbjct: 7 DLKRELNDLIKKRAEIAETLEALENQIYNFEGSYLEETAEYGNVIKGWDRYALAMPPSKSGVKLDKKGLSRKADKDADRLFSYSSVTSPA 96
BLAST of jgi.p|Trimin1|101520 vs. uniprot
Match: A0A7J7GM13_CAMSI (Uncharacterized protein n=3 Tax=Camellia sinensis TaxID=4442 RepID=A0A7J7GM13_CAMSI) HSP 1 Score: 53.9 bits (128), Expect = 9.580e-6 Identity = 31/85 (36.47%), Postives = 51/85 (60.00%), Query Frame = 3 Query: 168 IKALAEKKTSLDREVHQIETQIHQLERSYLADTAPYGNVIEGWEKYHQHREQGTGSKQXXXXXXXXAAKMIFSLSSVTSPASQEQ 422
+ +L K+ L E+H IE Q+++LE SYL +++ +GN ++G++ + + T K+ IFSLSSVTSPA++EQ
Sbjct: 16 LASLLGKREKLQEELHNIEKQVYELETSYLQESSHFGNALKGFDGFLSASKNTTNLKRSRKFQPEDR---IFSLSSVTSPAAEEQ 97
BLAST of jgi.p|Trimin1|101520 vs. uniprot
Match: A0A1I8I1R1_9PLAT (Chromatin modification-related protein MEAF6 n=4 Tax=Macrostomum lignano TaxID=282301 RepID=A0A1I8I1R1_9PLAT) HSP 1 Score: 53.1 bits (126), Expect = 1.740e-5 Identity = 30/82 (36.59%), Postives = 47/82 (57.32%), Query Frame = 3 Query: 165 EIKALAEKKTSLDREVHQIETQIHQLERSYLADTAPYGNVIEGWEKYHQHREQGTGSKQXXXXXXXXAAKMIFSLSSVTSPA 410
E+ L +K+ L + +E QI++ E SYL DTA YGN+I+GW++Y ++ G + + + +FS SSVTS A
Sbjct: 22 ELTQLLQKRAELAETLGNLERQIYRFEGSYLEDTAQYGNIIKGWDRYLTSQKPGQDVRDKRSRKIKESDR-LFSKSSVTSAA 102 The following BLAST results are available for this feature:
BLAST of jgi.p|Trimin1|101520 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90) Total hits: 25 ZOOMx 1POSITION0
Pagesback to topAlignments
The following features are aligned
Analyses
This mRNA is derived from or has results from the following analyses
Properties
Relationships
This mRNA is a part of the following gene feature(s):
The following polypeptide feature(s) derives from this mRNA:
The following exon feature(s) are a part of this mRNA:
The following five_prime_UTR feature(s) are a part of this mRNA:
The following CDS feature(s) are a part of this mRNA:
The following three_prime_UTR feature(s) are a part of this mRNA:
Sequences
The following sequences are available for this feature:
spliced messenger RNA >mRNA_14907 ID=mRNA_14907|Name=jgi.p|Trimin1|101520|organism=Tribonema minus UTEX_B_3156 |type=mRNA|length=602bp|location=Sequence derived from alignment at Contig_98:283261..287323+ (Tribonema minus UTEX_B_3156 )|Notes=Excludes all bases but those of type(s): exon. GGCGAGCCTGTGCAAACTGACGAACTGGAAGGCAGGCATATTCAGTACCAback to top protein sequence of jgi.p|Trimin1|101520 >Trimin1|101520|CE101519_148 ID=Trimin1|101520|CE101519_148|Name=jgi.p|Trimin1|101520|organism=Tribonema minus UTEX_B_3156 |type=polypeptide|length=120bp MAPAAAELEKEIKALAEKKTSLDREVHQIETQIHQLERSYLADTAPYGNVback to top mRNA from alignment at Contig_98:283261..287323+ Legend: exonfive_prime_UTRpolypeptideCDSthree_prime_UTR Hold the cursor over a type above to highlight its positions in the sequence below.>mRNA_14907 ID=mRNA_14907|Name=jgi.p|Trimin1|101520|organism=Tribonema minus UTEX_B_3156 |type=mRNA|length=4063bp|location=Sequence derived from alignment at Contig_98:283261..287323+ (Tribonema minus UTEX_B_3156 )back to top Coding sequence (CDS) from alignment at Contig_98:283261..287323+ >mRNA_14907 ID=mRNA_14907|Name=jgi.p|Trimin1|101520|organism=Tribonema minus UTEX_B_3156 |type=CDS|length=360bp|location=Sequence derived from alignment at Contig_98:283261..287323+ (Tribonema minus UTEX_B_3156 )back to top |