mRNA_14883 (mRNA) Tribonema minus UTEX_B_3156

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
Namejgi.p|Trimin1|175592
Unique NamemRNA_14883
TypemRNA
OrganismTribonema minus UTEX_B_3156 (Tribonema minus UTEX_B_3156 )
Homology
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BLAST of jgi.p|Trimin1|175592 vs. uniprot
Match: A0A836CL59_9STRA (Cir_N domain-containing protein n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A836CL59_9STRA)

HSP 1 Score: 234 bits (597), Expect = 7.660e-78
Identity = 124/124 (100.00%), Postives = 124/124 (100.00%), Query Frame = 1 
Query:    1 MSLAFLFKKGWHTATIRNQEKVWIAEQKHEEEEQRIRDLQKQVEXXXQLQELQGVTTKREDRVDWMYEGAMQVRAETDAKEADEYLLGKTFKGKQVRAATALLGGLSEMHGNESKDRRALGDKV 372
            MSLAFLFKKGWHTATIRNQEKVWIAEQKHEEEEQRIRDLQKQVEXXXQLQELQGVTTKREDRVDWMYEGAMQVRAETDAKEADEYLLGKTFKGKQVRAATALLGGLSEMHGNESKDRRALGDKV
Sbjct:    1 MSLAFLFKKGWHTATIRNQEKVWIAEQKHEEEEQRIRDLQKQVEXXXQLQELQGVTTKREDRVDWMYEGAMQVRAETDAKEADEYLLGKTFKGKQVRAATALLGGLSEMHGNESKDRRALGDKV 124
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BLAST of jgi.p|Trimin1|175592 vs. uniprot
Match: A0A1V9Y7G5_9STRA (Pre-mRNA-splicing factor CWC25 n=1 Tax=Thraustotheca clavata TaxID=74557 RepID=A0A1V9Y7G5_9STRA)

HSP 1 Score: 85.9 bits (211), Expect = 4.620e-17
Identity = 51/99 (51.52%), Postives = 67/99 (67.68%), Query Frame = 1 
Query:    1 MSLAFLFKKGWHTATIRNQEKVWIAEQKHEEEEQRIRDLQKQVEXXX---QLQELQGVTT----KREDRVDWMYEGAMQVRAETDAKEADEYLLGKTFK 276
            MSLAFL KK WHT+ ++N EKVW AEQKH +EEQ++ +L+K +E  X   +L+ELQ  TT     +  RVDWMYEG M   A    + A++YLLGK +K
Sbjct:    1 MSLAFLAKKSWHTSNLKNVEKVWKAEQKHAQEEQKLLELRKNIEEEXXXKELRELQAKTTGDKVNQTQRVDWMYEGPMA--ASQAERTAEDYLLGKEYK 97
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BLAST of jgi.p|Trimin1|175592 vs. uniprot
Match: A0A7S2XUU7_9STRA (Hypothetical protein (Fragment) n=1 Tax=Attheya septentrionalis TaxID=420275 RepID=A0A7S2XUU7_9STRA)

HSP 1 Score: 76.6 bits (187), Expect = 1.770e-15
Identity = 44/98 (44.90%), Postives = 66/98 (67.35%), Query Frame = 1 
Query:    7 LAFLFKKGWHTATIRNQEKVWIAEQKHEEEEQRIRDLQKQVEXXXQLQELQGVTTKRE--DR-VDWMYEGAMQV----RAETDAKEADEYLLGKTFKG 279
            LAFL KK +HT  + NQE+VWIAEQK   E+Q+ ++L +Q++   + +ELQ +T K++  DR +DWMYEG   +    + E  AK+ ++YLLGK + G
Sbjct:    7 LAFLSKKSFHTKNLDNQERVWIAEQKQAAEDQKTKELARQIQQEREQEELQKLTGKKKGLDRGIDWMYEGGKALDNDSQQEALAKDQEDYLLGKEYTG 104
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BLAST of jgi.p|Trimin1|175592 vs. uniprot
Match: A0A1V9YK09_9STRA (Pre-mRNA-splicing factor CWC25-like protein n=1 Tax=Achlya hypogyna TaxID=1202772 RepID=A0A1V9YK09_9STRA)

HSP 1 Score: 80.1 bits (196), Expect = 3.580e-15
Identity = 52/99 (52.53%), Postives = 65/99 (65.66%), Query Frame = 1 
Query:    1 MSLAFLFKKGWHTATIRNQEKVWIAEQKHEEEEQRIRDLQKQVEXXXQLQ---ELQGVTTKRE----DRVDWMYEGAMQVRAETDAKEADEYLLGKTFK 276
            MSLAFL KK WHT+ ++N EKVW AEQKH +EE ++ +L+K   XXX      ELQ  TT ++     RVDWMYEG M   A   AK A++YLLGK +K
Sbjct:    1 MSLAFLAKKSWHTSNLKNVEKVWKAEQKHAQEENKLLELRKNXXXXXXXXXXXELQAKTTGKKLDTTQRVDWMYEGPMA--ASQTAKTAEDYLLGKEYK 97
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BLAST of jgi.p|Trimin1|175592 vs. uniprot
Match: A0A0G4IIB5_PLABS (Cir_N domain-containing protein n=1 Tax=Plasmodiophora brassicae TaxID=37360 RepID=A0A0G4IIB5_PLABS)

HSP 1 Score: 79.3 bits (194), Expect = 7.600e-15
Identity = 46/103 (44.66%), Postives = 65/103 (63.11%), Query Frame = 1 
Query:    7 LAFLFKKGWHTATIRNQEKVWIAEQKHEEEEQRIRDLQKQVEXXXQLQELQGVT-----TKREDRVDWMYEGAMQVRAETDAKEADEYLLGKTFKGKQVRAAT 300
            L+FL KK WHTATI N EKVW+AEQK   E+ ++  L+K++E  X  +EL+ +      TK  +R+DWMY  A  V A+   KE +E+LLGKT    +++  T
Sbjct:    6 LSFLNKKSWHTATIANAEKVWLAEQKDAAEKSKLAQLRKEIEEEXXXEELRKLQLQRGGTKHVERLDWMYRSA-DVEAQQRDKEREEFLLGKTIPSSELQEPT 107
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BLAST of jgi.p|Trimin1|175592 vs. uniprot
Match: F0WBU6_9STRA (Uncharacterized protein AlNc14C53G4137 n=1 Tax=Albugo laibachii Nc14 TaxID=890382 RepID=F0WBU6_9STRA)

HSP 1 Score: 77.8 bits (190), Expect = 2.970e-14
Identity = 53/114 (46.49%), Postives = 68/114 (59.65%), Query Frame = 1 
Query:    1 MSLAFLFKKGWHTATIRNQEKVWIAEQKHEEEEQRIRDLQKQVEXXXQ------LQELQGVTTKREDRVDWMYEGAMQVRAETDAKEADEYLLGKTFK----GKQVRAATALLG 312
            MSLAFL KK WHTA +RN EKVWIAEQKH  E +++ +L+K +EXXX       LQ   G      +RV+WMYE  M+ + +T     +EYLLGK  K    G+Q+      LG
Sbjct:    1 MSLAFLAKKSWHTANLRNVEKVWIAEQKHAAEGKKLDELRKNIEXXXXXXXXXXLQAAHGDKKAAIERVEWMYEAPMEQQEKT----TEEYLLGKKLKSEASGQQLSEGYGSLG 110
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BLAST of jgi.p|Trimin1|175592 vs. uniprot
Match: A0A0H5R883_9EUKA (Cir_N domain-containing protein n=1 Tax=Spongospora subterranea TaxID=70186 RepID=A0A0H5R883_9EUKA)

HSP 1 Score: 77.8 bits (190), Expect = 3.010e-14
Identity = 44/100 (44.00%), Postives = 62/100 (62.00%), Query Frame = 1 
Query:    7 LAFLFKKGWHTATIRNQEKVWIAEQKHEEEEQRIRDLQKQVEXXXQLQELQ------GVTTKREDRVDWMYEGAMQVRAETDAKEADEYLLGKTFKGKQV 288
            L+FL KK WHTATI N EKVW+AEQK   E+ ++  LQK++    Q++EL+      G+  K  +R+DWMY  A ++ AE   KE +++LLGK      V
Sbjct:    6 LSFLNKKSWHTATIANTEKVWLAEQKDVAEKAKLAQLQKEIAEERQVEELRALQRQHGIGKKPVERLDWMYRSA-EIEAELHQKEKEDFLLGKEVSSATV 104
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BLAST of jgi.p|Trimin1|175592 vs. uniprot
Match: A0A7S2YC61_9STRA (Hypothetical protein (Fragment) n=1 Tax=Amphiprora paludosa TaxID=265537 RepID=A0A7S2YC61_9STRA)

HSP 1 Score: 76.3 bits (186), Expect = 5.060e-14
Identity = 47/117 (40.17%), Postives = 66/117 (56.41%), Query Frame = 1 
Query:    7 LAFLFKKGWHTATIRNQEKVWIAEQKHEEEEQRIRDLQKQVEXXXQLQELQGVTTKREDRVD----WMYEG---AMQVRAETDAKEADEYLLGKTF-----KGKQVRAATALLGGLS 321
            L FL KK WH   I NQEKVW+AEQ+ E+E+ + ++L KQ++   + +EL  +  K   RVD    WMY G     ++  +   K+++EYLLGK F     KG  V AA     GL+
Sbjct:   28 LGFLSKKSWHVKNIANQEKVWVAEQREEQEKVKAKELAKQIQQEREQEELDKIAGKSGSRVDRGIDWMYHGHEKESEIAKQDAEKQSEEYLLGKEFVPDTVKGDLVAAAEEQAHGLN 144
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BLAST of jgi.p|Trimin1|175592 vs. uniprot
Match: A0A067CZM0_SAPPC (Cir_N domain-containing protein n=2 Tax=Saprolegnia TaxID=4769 RepID=A0A067CZM0_SAPPC)

HSP 1 Score: 77.0 bits (188), Expect = 5.850e-14
Identity = 48/98 (48.98%), Postives = 64/98 (65.31%), Query Frame = 1 
Query:    1 MSLAFLFKKGWHTATIRNQEKVWIAEQKHEEEEQRIRDLQKQVEXXXQ---LQELQ----GVTTKREDRVDWMYEGAMQVRAETDAKEADEYLLGKTF 273
            MSLAFL KK WHT+ ++N EKVW AEQKH +EE ++ +L+K +E XX    L+E+Q    G    +  RVDWMYEG M   A    + A++YLLGK +
Sbjct:    1 MSLAFLAKKSWHTSNLKNVEKVWKAEQKHAQEENKLLELRKNLEEXXXXXXLREMQAKMSGGKVDQTQRVDWMYEGPMA--ASQTERTAEDYLLGKEY 96
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BLAST of jgi.p|Trimin1|175592 vs. uniprot
Match: A0A024G8T7_9STRA (Cir_N domain-containing protein n=1 Tax=Albugo candida TaxID=65357 RepID=A0A024G8T7_9STRA)

HSP 1 Score: 75.9 bits (185), Expect = 1.430e-13
Identity = 51/100 (51.00%), Postives = 63/100 (63.00%), Query Frame = 1 
Query:    1 MSLAFLFKKGWHTATIRNQEKVWIAEQKHEEEEQRIRDLQKQVEXXXQ------LQELQGVTTKREDRVDWMYEGAMQVRAETDAKEADEYLLGKTFKGK 282
            MSLAFL KK WHTA +RN EKVWIAEQKH  E +++ +L+K +EXXX       LQ   G      +RV+WMYE  M V+ E   K  +EYLLGK  K +
Sbjct:    1 MSLAFLAKKSWHTANLRNVEKVWIAEQKHAAEGKKLDELRKNIEXXXXXXXXXXLQAAHGDKKAAIERVEWMYEAPM-VQQE---KSTEEYLLGKKLKSE 96
The following BLAST results are available for this feature:
BLAST of jgi.p|Trimin1|175592 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
A0A836CL59_9STRA7.660e-78100.00Cir_N domain-containing protein n=1 Tax=Tribonema ... [more]
A0A1V9Y7G5_9STRA4.620e-1751.52Pre-mRNA-splicing factor CWC25 n=1 Tax=Thraustothe... [more]
A0A7S2XUU7_9STRA1.770e-1544.90Hypothetical protein (Fragment) n=1 Tax=Attheya se... [more]
A0A1V9YK09_9STRA3.580e-1552.53Pre-mRNA-splicing factor CWC25-like protein n=1 Ta... [more]
A0A0G4IIB5_PLABS7.600e-1544.66Cir_N domain-containing protein n=1 Tax=Plasmodiop... [more]
F0WBU6_9STRA2.970e-1446.49Uncharacterized protein AlNc14C53G4137 n=1 Tax=Alb... [more]
A0A0H5R883_9EUKA3.010e-1444.00Cir_N domain-containing protein n=1 Tax=Spongospor... [more]
A0A7S2YC61_9STRA5.060e-1440.17Hypothetical protein (Fragment) n=1 Tax=Amphiprora... [more]
A0A067CZM0_SAPPC5.850e-1448.98Cir_N domain-containing protein n=2 Tax=Saprolegni... [more]
A0A024G8T7_9STRA1.430e-1351.00Cir_N domain-containing protein n=1 Tax=Albugo can... [more]

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
Contig_127contigContig_127:414459..415722 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Tribonema minus UTEX_B_31562021-06-17
Properties
Property NameValue
ProteomeIdTrimin1|175592|e_gw1.127.7.1
BRITEko00000,ko00001,ko00002,ko01000,ko01001,ko04131
KEGG ModuleM00408
KEGG Pathwayko01521,ko01522,ko04012,ko04066,ko04072,ko04136,ko04138,ko04139,ko04140,ko04144,ko04145,ko04150,ko04151,ko04152,ko04211,ko04212,ko04213,ko04218,ko04371,ko04630,ko04659,ko04714,ko04910,ko04919,ko04920,ko04930,ko04931,ko05165,ko05167,ko05200,ko05205,ko05206,ko05210,ko05212,ko05214,ko05215,ko05221,ko05224,ko05225,ko05226,ko05230,ko05231,map01521,map01522,map04012,map04066,map04072,map04136,map04138,map04139,map04140,map04144,map04145,map04150,map04151,map04152,map04211,map04212,map04213,map04218,map04371,map04630,map04659,map04714,map04910,map04919,map04920,map04930,map04931,map05165,map05167,map05200,map05205,map05206,map05210,map05212,map05214,map05215,map05221,map05224,map05225,map05226,map05230,map05231
KEGG koko:K07203,ko:K12182
EC2.7.11.1
GOsGO:0000003,GO:0000375,GO:0000377,GO:0000398,GO:0003006,GO:0003674,GO:0005488,GO:0005515,GO:0005575,GO:0005622,GO:0005623,GO:0005634,GO:0005654,GO:0005681,GO:0005684,GO:0006139,GO:0006396,GO:0006397,GO:0006725,GO:0006807,GO:0007049,GO:0007275,GO:0007530,GO:0008150,GO:0008152,GO:0008380,GO:0009987,GO:0010467,GO:0016070,GO:0016071,GO:0016604,GO:0016607,GO:0018992,GO:0022414,GO:0031974,GO:0031981,GO:0032501,GO:0032502,GO:0032991,GO:0034641,GO:0040021,GO:0040022,GO:0043170,GO:0043226,GO:0043227,GO:0043229,GO:0043231,GO:0043233,GO:0044237,GO:0044238,GO:0044422,GO:0044424,GO:0044428,GO:0044446,GO:0044451,GO:0044464,GO:0045292,GO:0046483,GO:0048856,GO:0051321,GO:0070013,GO:0071704,GO:0090304,GO:1901360,GO:1990904
Preferred nameCWC25
DescriptionRNA splicing
COG categoryS
Max annot lvl2759|Eukaryota
EggNOG OGsKOG3869@1|root,KOG3869@2759|Eukaryota
Evalue1.01e-19
Seed ortholog2880.D8LK02
Hectar predicted targeting categoryother localisation
Ec32 ortholog descriptionCBF1-interacting co-repressor CIR, N-terminal domain
Ec32 orthologEc-06_007650.1
TranscriptId175914
TrackFilteredModels1
ProteinId175592
Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesTypePosition
jgi.p|Trimin1|175592gene_14883Tribonema minus UTEX_B_3156 geneContig_127 414459..415722 +


The following exon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
exon_14883_1exon_14883_1Tribonema minus UTEX_B_3156 exonContig_127 414459..414602 +
exon_14883_2exon_14883_2Tribonema minus UTEX_B_3156 exonContig_127 415492..415722 +


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
CDS_14883CDS_14883Tribonema minus UTEX_B_3156 CDSContig_127 414459..414602 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
jgi.p|Trimin1|175592Trimin1|175592|e_gw1.127.7.1Tribonema minus UTEX_B_3156 polypeptideContig_127 414459..415722 +


Sequences
The following sequences are available for this feature:

spliced messenger RNA

>mRNA_14883 ID=mRNA_14883|Name=jgi.p|Trimin1|175592|organism=Tribonema minus UTEX_B_3156 |type=mRNA|length=375bp|location=Sequence derived from alignment at Contig_127:414459..415722+ (Tribonema minus UTEX_B_3156 )|Notes=Excludes all bases but those of type(s): exon.  
ATGTCTTTGGCCTTCCTGTTCAAGAAAGGATGGCACACCGCCACCATACG
TAACCAGGAGAAGGTTTGGATAGCGGAGCAGAAGCATGAGGAGGAGGAGC
AGAGGATCAGGGACCTGCAAAAGCAAGTGGAAGAGGAGAGACAGCTGCAG
GAGCTGCAGGGGGTGACCACGAAGCGCGAGGACCGCGTGGACTGGATGTA
TGAGGGCGCGATGCAAGTGCGCGCGGAGACGGACGCAAAGGAGGCGGACG
AGTACCTTCTGGGCAAGACGTTCAAGGGCAAGCAGGTGCGCGCCGCAACT
GCCTTGTTAGGGGGTCTCAGCGAAATGCATGGAAACGAATCAAAAGATCG
TAGAGCTCTAGGTGACAAGGTGTGA
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protein sequence of jgi.p|Trimin1|175592

>Trimin1|175592|e_gw1.127.7.1 ID=Trimin1|175592|e_gw1.127.7.1|Name=jgi.p|Trimin1|175592|organism=Tribonema minus UTEX_B_3156 |type=polypeptide|length=125bp
MSLAFLFKKGWHTATIRNQEKVWIAEQKHEEEEQRIRDLQKQVEEERQLQ
ELQGVTTKREDRVDWMYEGAMQVRAETDAKEADEYLLGKTFKGKQVRAAT
ALLGGLSEMHGNESKDRRALGDKV*
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mRNA from alignment at Contig_127:414459..415722+

Legend: exonpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_14883 ID=mRNA_14883|Name=jgi.p|Trimin1|175592|organism=Tribonema minus UTEX_B_3156 |type=mRNA|length=1264bp|location=Sequence derived from alignment at Contig_127:414459..415722+ (Tribonema minus UTEX_B_3156 )
ATGTCTTTGGCCTTCCTGTTCAAGAAAGGATGGCACACCGCCACCATACG
TAACCAGGAGAAGGTTTGGATAGCGGAGCAGAAGCATGAGGAGGAGGAGC
AGAGGATCAGGGACCTGCAAAAGCAAGTGGAAGAGGAGAGACAGGTACGC
AACAGAGGCAATATGGAGCAACACAGCCTGCTGCAAACAAGTATGGACCA
CTTCATCCTCCTCATGTGGGAGTCTGTGCAGCCTGTTGCGGTGAAGAACT
TGAGCAATGCAGCTGATCGCTTGGATATTATCCTGGTTTCGACAGTGACA
GCACATGTCTGCAGATAGTGATGTGTCACTCTGCACTACCTAGTGCTCTG
CCCCCTTTCTTGTTGGGATAATTTCTATCATGTCTGACCTGGGATGAGCT
GCGATTTACTGCAGGAATAACAACATATTAGACCAGGAATTTCCCTTGCA
AGAATGCCTTGTCCTAGGCCCAGTAGAGAGCCCAGCAGGACACAACGTTG
CTGGTTAATATGTCCACTGCTGGCTTGCAGGGCTCCTTCCATAACCAGAG
GCGGCATGAATGCTGTGTGCGGCAAATCACAGCACCACATCGTTTATCTT
GCCAGCAGACTTGCATGTGTCCCGTGCTGGCATCGCGGAACGGAAGGCAT
GATCAGCACTCGCCTTGCTGCGCGAACCTGTTGCAGTTGCTGCAGCCCGC
TTGCTGCTGTATATGCCGGCAAATCTCGGTCACGCATATGCAGCACCCAT
TTGCCATTGGTTCCCATTGTGCTGTCAAACTATTTTTGCTCACATTCTTG
TTTGGTGGCTTGGCTTCAACATGCTCCAATGGGCACCGGTCCCTGTCACC
CATCAAACTGTTGTCTTTAGCGACGAGAACGGTGGACCCTGCATGGAATC
ACGGTAGCGCGTCATTATGGCATTGACCAGATGCACAAGGGAGGCCATGG
ATGTGCTTGCGCTGACTCTGACACGCCTACGGACCGCTTTCCTGAACCCA
TCGCACCTCTCGCTCGCGTCTCAGATACGGGAGCTGCAGGAGCTGCAGGG
GGTGACCACGAAGCGCGAGGACCGCGTGGACTGGATGTATGAGGGCGCGA
TGCAAGTGCGCGCGGAGACGGACGCAAAGGAGGCGGACGAGTACCTTCTG
GGCAAGACGTTCAAGGGCAAGCAGGTGCGCGCCGCAACTGCCTTGTTAGG
GGGTCTCAGCGAAATGCATGGAAACGAATCAAAAGATCGTAGAGCTCTAG
GTGACAAGGTGTGA
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Coding sequence (CDS) from alignment at Contig_127:414459..415722+

>mRNA_14883 ID=mRNA_14883|Name=jgi.p|Trimin1|175592|organism=Tribonema minus UTEX_B_3156 |type=CDS|length=375bp|location=Sequence derived from alignment at Contig_127:414459..415722+ (Tribonema minus UTEX_B_3156 )
ATGTCTTTGGCCTTCCTGTTCAAGAAAGGATGGCACACCGCCACCATACG
TAACCAGGAGAAGGTTTGGATAGCGGAGCAGAAGCATGAGGAGGAGGAGC
AGAGGATCAGGGACCTGCAAAAGCAAGTGGAAGAGGAGAGACAGCTGCAG
GAGCTGCAGGGGGTGACCACGAAGCGCGAGGACCGCGTGGACTGGATGTA
TGAGGGCGCGATGCAAGTGCGCGCGGAGACGGACGCAAAGGAGGCGGACG
AGTACCTTCTGGGCAAGACGTTCAAGGGCAAGCAGGTGCGCGCCGCAACT
GCCTTGTTAGGGGGTCTCAGCGAAATGCATGGAAACGAATCAAAAGATCG
TAGAGCTCTAGGTGACAAGGTGTGA
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