mRNA_14837 (mRNA) Tribonema minus UTEX_B_3156
Overview
Homology
BLAST of jgi.p|Trimin1|138967 vs. uniprot
Match: A0A835ZEA6_9STRA (Uncharacterized protein (Fragment) n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A835ZEA6_9STRA) HSP 1 Score: 290 bits (741), Expect = 4.460e-99 Identity = 147/147 (100.00%), Postives = 147/147 (100.00%), Query Frame = 1 Query: 1 LDTGDIVLFSRPCQRMGVLGCILCLGTKTVHATPWDHIGVVVKDKDGTNRIWEAAFSGVKHYDLHARLQRSSAYMIAVRRLYTERNDAMRESARQYVAEIEQRPYKASYAQLVRVAVSQYPAKRRRRDLHRSMRRLEEDATFVESEL 441 LDTGDIVLFSRPCQRMGVLGCILCLGTKTVHATPWDHIGVVVKDKDGTNRIWEAAFSGVKHYDLHARLQRSSAYMIAVRRLYTERNDAMRESARQYVAEIEQRPYKASYAQLVRVAVSQYPAKRRRRDLHRSMRRLEEDATFVESEL Sbjct: 1 LDTGDIVLFSRPCQRMGVLGCILCLGTKTVHATPWDHIGVVVKDKDGTNRIWEAAFSGVKHYDLHARLQRSSAYMIAVRRLYTERNDAMRESARQYVAEIEQRPYKASYAQLVRVAVSQYPAKRRRRDLHRSMRRLEEDATFVESEL 147
BLAST of jgi.p|Trimin1|138967 vs. uniprot
Match: D8LLR0_ECTSI (Uncharacterized protein (Fragment) n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D8LLR0_ECTSI) HSP 1 Score: 116 bits (290), Expect = 2.090e-28 Identity = 70/151 (46.36%), Postives = 89/151 (58.94%), Query Frame = 1 Query: 1 LDTGDIVLFSRPCQRMG-VLGCILCLGTKTVHATPWDHIGVVVKDKDGTNRIWEAAFSGVKHYDLHARLQRSSAYMIAVRRLYTERNDAMRESARQYVAEIEQRPYKAS---YAQLVRVAVSQYPAKRRRRDLHRSMRRLEEDATFVESEL 441 LDTGD+VLF RPC +MG G +C K V P+DHIGVVVKD+ G N + EA+FSGV L R++RSSA I VRRL R + MRE AR++V+E+ PYK Q+V A +PAK +RR +H L +E EL Sbjct: 24 LDTGDLVLFDRPCLKMGGFFGAAICAAAKVVGGVPFDHIGVVVKDEKGLNVMVEASFSGVAVRPLCERVRRSSASQICVRRLQAHRTEEMREEARRFVSEVSHLPYKEGSEGLLQMVSAAFRFHPAKEQRRRVHAETVALSASIASLEKEL 174
BLAST of jgi.p|Trimin1|138967 vs. uniprot
Match: A0A7S1NCK3_9EUGL (Hypothetical protein (Fragment) n=1 Tax=Eutreptiella gymnastica TaxID=73025 RepID=A0A7S1NCK3_9EUGL) HSP 1 Score: 94.7 bits (234), Expect = 3.860e-22 Identity = 46/115 (40.00%), Postives = 67/115 (58.26%), Query Frame = 1 Query: 1 LDTGDIVLFSRPCQRMGVLGCILCLGTKTVHATPWDHIGVVVKDKDGTNRIWEAAFSGVKHYDLHARLQRSSAYMIAVRRLYTERNDAMRESARQYVAEIEQRPYKASYAQLVRV 345 +D GD+VLF+R C +M G +C K A+ WDH+G+VV+D DG+ I +A F GV+ Y L RL+RS + I RRL R + MR+ + E+ Q PYK + +R+ Sbjct: 12 IDAGDLVLFNRQCLKMSPFGAAVCFSAKLYCASKWDHVGIVVRDPDGSLHILDAGFGGVRKYPLLERLRRSKSDDICFRRLAVPRTNEMRQQLIDFTTEVVQAPYKKDTLEFLRI 126
BLAST of jgi.p|Trimin1|138967 vs. uniprot
Match: A0A7S4CKQ5_9EUGL (Hypothetical protein (Fragment) n=1 Tax=Eutreptiella gymnastica TaxID=73025 RepID=A0A7S4CKQ5_9EUGL) HSP 1 Score: 93.6 bits (231), Expect = 2.140e-19 Identity = 46/115 (40.00%), Postives = 68/115 (59.13%), Query Frame = 1 Query: 1 LDTGDIVLFSRPCQRMGVLGCILCLGTKTVHATPWDHIGVVVKDKDGTNRIWEAAFSGVKHYDLHARLQRSSAYMIAVRRLYTERNDAMRESARQYVAEIEQRPYKASYAQLVRV 345 LD GDIVLF+R C G +C K + WDHIG++VKD DG+ + +A F GV+ + L RL+RS + + +RRL R + MR+ ++ E+ Q PYK + +L+RV Sbjct: 36 LDAGDIVLFNRRCLTFSPFGAAICFTAKAYARSRWDHIGIIVKDPDGSLHLLDAGFGGVRKFPLRDRLERSKSDDLCIRRLAMPRTNEMRQKLSEFSDEVVQAPYKKAAQELLRV 150
BLAST of jgi.p|Trimin1|138967 vs. uniprot
Match: W4H8U0_9STRA (Uncharacterized protein n=2 Tax=Aphanomyces astaci TaxID=112090 RepID=W4H8U0_9STRA) HSP 1 Score: 82.4 bits (202), Expect = 1.770e-15 Identity = 51/150 (34.00%), Postives = 76/150 (50.67%), Query Frame = 1 Query: 1 LDTGDIVLFSRPCQRMGVLGCILCLGTKTVHATPWDHIGVVVKDKDGTNRIWEAAFSGVKHYDLHARLQRSSAYMIAVRRLYTERNDAMRESARQYVAEIEQR--PYKASYAQLVRVAVSQYPAKRRRR-------DLHRSMRRLEEDAT 423 LDTGD+VLF R C MGV G ++C K T WDH GV+ K DG EAA +GVK L R+ S +Y + ++++ R R+ A ++ + ++ PY+ LV S P++ R DL R M+ +++D T Sbjct: 21 LDTGDVVLFDRKCNSMGVYGGVICHSAKLFGQTRWDHNGVIYKTDDGKLMFLEAAMNGVKLRPLVDRILHSRSYEVRIQKVEVHRTPEFRQRAADFIRRVVEQDIPYEDRIQVLVNAGASFVPSRVAREQFYHDIVDLKRHMKTIQDDLT 170
BLAST of jgi.p|Trimin1|138967 vs. uniprot
Match: F0WJW3_9STRA (Mitochondrial Carrier (MC) Family putative n=1 Tax=Albugo laibachii Nc14 TaxID=890382 RepID=F0WJW3_9STRA) HSP 1 Score: 80.1 bits (196), Expect = 1.150e-14 Identity = 48/113 (42.48%), Postives = 64/113 (56.64%), Query Frame = 1 Query: 1 LDTGDIVLFSRPCQRMGVLGCILCLGTKTVHATPWDHIGVVVK--DKDGTNR------IWEAAFSGVKHYDLHARLQRSSAYMIAVRRLYTERNDAMRESARQYVAEIEQRPY 315 LDTGDIVLFSRPC +M + G I+C K T WDHIGV+V+ +G+ + + EA SGVK L R+ RS A IA+RRL R + A+Q+V ++ Y Sbjct: 27 LDTGDIVLFSRPCLQMELYGGIICACAKLFGNTDWDHIGVIVRVPTSEGSAKGISEHYLLEATLSGVKLRPLEERILRSRASEIAIRRLQVHRTPEFQREAQQFVQLVQDSKY 139
BLAST of jgi.p|Trimin1|138967 vs. uniprot
Match: A0A024UU32_9STRA (Uncharacterized protein n=8 Tax=Aphanomyces invadans TaxID=157072 RepID=A0A024UU32_9STRA) HSP 1 Score: 79.7 bits (195), Expect = 1.540e-14 Identity = 45/149 (30.20%), Postives = 76/149 (51.01%), Query Frame = 1 Query: 1 LDTGDIVLFSRPCQRMGVLGCILCLGTKTVHATPWDHIGVVVKDKDGTNRIWEAAFSGVKHYDLHARLQRSSAYMIAVRRLYTERNDAMRESARQYVAEIEQR--PYKASYAQLVRVAVSQYPAKRRRRDLHRSMRRLEEDATFVESEL 441 LDTGD+VLF R C MG+ G ++C K T WDH GV+VK DG EAA +GVK L R+ S +Y + ++++ R R+ A +++ + ++ PY+ L+ S P++ R + + L+ ++ ++ Sbjct: 21 LDTGDVVLFDRKCNSMGLYGGVICHSAKLFGQTRWDHNGVIVKTDDGKLMFLEAAMNGVKLRPLIDRILYSRSYEVRIQKVEVHRTPEFRQRAAEFIRRVIEQDIPYEDRIQVLLNAGASFVPSRMAREQFYHDIVELKRQIKTIQDDI 169
BLAST of jgi.p|Trimin1|138967 vs. uniprot
Match: A0A024GPF7_9STRA (Uncharacterized protein n=2 Tax=Albugo candida TaxID=65357 RepID=A0A024GPF7_9STRA) HSP 1 Score: 76.6 bits (187), Expect = 1.860e-13 Identity = 45/113 (39.82%), Postives = 65/113 (57.52%), Query Frame = 1 Query: 1 LDTGDIVLFSRPCQRMGVLGCILCLGTKTVHATPWDHIGVVVK-------DKDGTN-RIWEAAFSGVKHYDLHARLQRSSAYMIAVRRLYTERNDAMRESARQYVAEIEQRPY 315 +DTGDIVLF+RPC +M + G I+C K T WDHIGV+V+ +K+ + + EA SGVK L R+ RS A I++RRL R +++A Q+V ++ Y Sbjct: 27 IDTGDIVLFNRPCFQMDLYGGIICTCAKLFGNTDWDHIGVIVRVPASAESEKNVSELHLLEATLSGVKLRPLEDRILRSRANEISIRRLQVHRTSEFQKAAHQFVQLVQDSKY 139
BLAST of jgi.p|Trimin1|138967 vs. uniprot
Match: A0A418FYT2_9STRA (Cyclic nucleotide-binding domain-containing protein n=2 Tax=Aphanomyces astaci TaxID=112090 RepID=A0A418FYT2_9STRA) HSP 1 Score: 72.4 bits (176), Expect = 4.970e-12 Identity = 38/107 (35.51%), Postives = 55/107 (51.40%), Query Frame = 1 Query: 1 LDTGDIVLFSRPCQRMGVLGCILCLGTKTVHATPWDHIGVVVKDKDGTNRI-------WEAAFSGVKHYDLHARLQRSSAYMIAVRRLYTERNDAMRESARQYVAEI 300 LDTGD+VLF R C MGV G ++C K T WDH GV+ K DG + EAA +GVK L R+ S +Y + ++++ R R+ A ++ + Sbjct: 21 LDTGDVVLFDRKCNSMGVYGGVICHSAKLFGQTRWDHNGVIYKTDDGVGNLKLRKLMFLEAAMNGVKLRPLVDRILHSRSYEVRIQKVEVHRTPEFRQRAADFIRRV 127
BLAST of jgi.p|Trimin1|138967 vs. uniprot
Match: A0A397B1S5_9STRA (Cyclic nucleotide-binding domain-containing protein n=1 Tax=Aphanomyces astaci TaxID=112090 RepID=A0A397B1S5_9STRA) HSP 1 Score: 72.4 bits (176), Expect = 5.200e-12 Identity = 38/107 (35.51%), Postives = 55/107 (51.40%), Query Frame = 1 Query: 1 LDTGDIVLFSRPCQRMGVLGCILCLGTKTVHATPWDHIGVVVKDKDGTNRI-------WEAAFSGVKHYDLHARLQRSSAYMIAVRRLYTERNDAMRESARQYVAEI 300 LDTGD+VLF R C MGV G ++C K T WDH GV+ K DG + EAA +GVK L R+ S +Y + ++++ R R+ A ++ + Sbjct: 21 LDTGDVVLFDRKCNSMGVYGGVICHSAKLFGQTRWDHNGVIYKTDDGVGNLKLRKLMFLEAAMNGVKLRPLVDRILHSRSYEVRIQKVEVHRTPEFRQRAADFIRRV 127 The following BLAST results are available for this feature:
BLAST of jgi.p|Trimin1|138967 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90) Total hits: 14
Pagesback to topAlignments
The following features are aligned
Analyses
This mRNA is derived from or has results from the following analyses
Properties
Relationships
This mRNA is a part of the following gene feature(s):
The following exon feature(s) are a part of this mRNA:
The following CDS feature(s) are a part of this mRNA:
The following polypeptide feature(s) derives from this mRNA:
Sequences
The following sequences are available for this feature:
spliced messenger RNA >mRNA_14837 ID=mRNA_14837|Name=jgi.p|Trimin1|138967|organism=Tribonema minus UTEX_B_3156 |type=mRNA|length=441bp|location=Sequence derived from alignment at Contig_156:330521..330961- (Tribonema minus UTEX_B_3156 )|Notes=Excludes all bases but those of type(s): exon. CTGGACACAGGCGACATTGTGCTGTTCTCGAGGCCATGTCAGCGCATGGGback to top protein sequence of jgi.p|Trimin1|138967 >Trimin1|138967|gw1.156.32.1 ID=Trimin1|138967|gw1.156.32.1|Name=jgi.p|Trimin1|138967|organism=Tribonema minus UTEX_B_3156 |type=polypeptide|length=147bp LDTGDIVLFSRPCQRMGVLGCILCLGTKTVHATPWDHIGVVVKDKDGTNRback to top mRNA from alignment at Contig_156:330521..330961- Legend: exonpolypeptideCDS Hold the cursor over a type above to highlight its positions in the sequence below.>mRNA_14837 ID=mRNA_14837|Name=jgi.p|Trimin1|138967|organism=Tribonema minus UTEX_B_3156 |type=mRNA|length=441bp|location=Sequence derived from alignment at Contig_156:330521..330961- (Tribonema minus UTEX_B_3156 )back to top Coding sequence (CDS) from alignment at Contig_156:330521..330961- >mRNA_14837 ID=mRNA_14837|Name=jgi.p|Trimin1|138967|organism=Tribonema minus UTEX_B_3156 |type=CDS|length=441bp|location=Sequence derived from alignment at Contig_156:330521..330961- (Tribonema minus UTEX_B_3156 )back to top |