mRNA_14837 (mRNA) Tribonema minus UTEX_B_3156

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
Namejgi.p|Trimin1|138967
Unique NamemRNA_14837
TypemRNA
OrganismTribonema minus UTEX_B_3156 (Tribonema minus UTEX_B_3156 )
Homology
BLAST of jgi.p|Trimin1|138967 vs. uniprot
Match: A0A835ZEA6_9STRA (Uncharacterized protein (Fragment) n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A835ZEA6_9STRA)

HSP 1 Score: 290 bits (741), Expect = 4.460e-99
Identity = 147/147 (100.00%), Postives = 147/147 (100.00%), Query Frame = 1
Query:    1 LDTGDIVLFSRPCQRMGVLGCILCLGTKTVHATPWDHIGVVVKDKDGTNRIWEAAFSGVKHYDLHARLQRSSAYMIAVRRLYTERNDAMRESARQYVAEIEQRPYKASYAQLVRVAVSQYPAKRRRRDLHRSMRRLEEDATFVESEL 441
            LDTGDIVLFSRPCQRMGVLGCILCLGTKTVHATPWDHIGVVVKDKDGTNRIWEAAFSGVKHYDLHARLQRSSAYMIAVRRLYTERNDAMRESARQYVAEIEQRPYKASYAQLVRVAVSQYPAKRRRRDLHRSMRRLEEDATFVESEL
Sbjct:    1 LDTGDIVLFSRPCQRMGVLGCILCLGTKTVHATPWDHIGVVVKDKDGTNRIWEAAFSGVKHYDLHARLQRSSAYMIAVRRLYTERNDAMRESARQYVAEIEQRPYKASYAQLVRVAVSQYPAKRRRRDLHRSMRRLEEDATFVESEL 147          
BLAST of jgi.p|Trimin1|138967 vs. uniprot
Match: D8LLR0_ECTSI (Uncharacterized protein (Fragment) n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D8LLR0_ECTSI)

HSP 1 Score: 116 bits (290), Expect = 2.090e-28
Identity = 70/151 (46.36%), Postives = 89/151 (58.94%), Query Frame = 1
Query:    1 LDTGDIVLFSRPCQRMG-VLGCILCLGTKTVHATPWDHIGVVVKDKDGTNRIWEAAFSGVKHYDLHARLQRSSAYMIAVRRLYTERNDAMRESARQYVAEIEQRPYKAS---YAQLVRVAVSQYPAKRRRRDLHRSMRRLEEDATFVESEL 441
            LDTGD+VLF RPC +MG   G  +C   K V   P+DHIGVVVKD+ G N + EA+FSGV    L  R++RSSA  I VRRL   R + MRE AR++V+E+   PYK       Q+V  A   +PAK +RR +H     L      +E EL
Sbjct:   24 LDTGDLVLFDRPCLKMGGFFGAAICAAAKVVGGVPFDHIGVVVKDEKGLNVMVEASFSGVAVRPLCERVRRSSASQICVRRLQAHRTEEMREEARRFVSEVSHLPYKEGSEGLLQMVSAAFRFHPAKEQRRRVHAETVALSASIASLEKEL 174          
BLAST of jgi.p|Trimin1|138967 vs. uniprot
Match: A0A7S1NCK3_9EUGL (Hypothetical protein (Fragment) n=1 Tax=Eutreptiella gymnastica TaxID=73025 RepID=A0A7S1NCK3_9EUGL)

HSP 1 Score: 94.7 bits (234), Expect = 3.860e-22
Identity = 46/115 (40.00%), Postives = 67/115 (58.26%), Query Frame = 1
Query:    1 LDTGDIVLFSRPCQRMGVLGCILCLGTKTVHATPWDHIGVVVKDKDGTNRIWEAAFSGVKHYDLHARLQRSSAYMIAVRRLYTERNDAMRESARQYVAEIEQRPYKASYAQLVRV 345
            +D GD+VLF+R C +M   G  +C   K   A+ WDH+G+VV+D DG+  I +A F GV+ Y L  RL+RS +  I  RRL   R + MR+    +  E+ Q PYK    + +R+
Sbjct:   12 IDAGDLVLFNRQCLKMSPFGAAVCFSAKLYCASKWDHVGIVVRDPDGSLHILDAGFGGVRKYPLLERLRRSKSDDICFRRLAVPRTNEMRQQLIDFTTEVVQAPYKKDTLEFLRI 126          
BLAST of jgi.p|Trimin1|138967 vs. uniprot
Match: A0A7S4CKQ5_9EUGL (Hypothetical protein (Fragment) n=1 Tax=Eutreptiella gymnastica TaxID=73025 RepID=A0A7S4CKQ5_9EUGL)

HSP 1 Score: 93.6 bits (231), Expect = 2.140e-19
Identity = 46/115 (40.00%), Postives = 68/115 (59.13%), Query Frame = 1
Query:    1 LDTGDIVLFSRPCQRMGVLGCILCLGTKTVHATPWDHIGVVVKDKDGTNRIWEAAFSGVKHYDLHARLQRSSAYMIAVRRLYTERNDAMRESARQYVAEIEQRPYKASYAQLVRV 345
            LD GDIVLF+R C      G  +C   K    + WDHIG++VKD DG+  + +A F GV+ + L  RL+RS +  + +RRL   R + MR+   ++  E+ Q PYK +  +L+RV
Sbjct:   36 LDAGDIVLFNRRCLTFSPFGAAICFTAKAYARSRWDHIGIIVKDPDGSLHLLDAGFGGVRKFPLRDRLERSKSDDLCIRRLAMPRTNEMRQKLSEFSDEVVQAPYKKAAQELLRV 150          
BLAST of jgi.p|Trimin1|138967 vs. uniprot
Match: W4H8U0_9STRA (Uncharacterized protein n=2 Tax=Aphanomyces astaci TaxID=112090 RepID=W4H8U0_9STRA)

HSP 1 Score: 82.4 bits (202), Expect = 1.770e-15
Identity = 51/150 (34.00%), Postives = 76/150 (50.67%), Query Frame = 1
Query:    1 LDTGDIVLFSRPCQRMGVLGCILCLGTKTVHATPWDHIGVVVKDKDGTNRIWEAAFSGVKHYDLHARLQRSSAYMIAVRRLYTERNDAMRESARQYVAEIEQR--PYKASYAQLVRVAVSQYPAKRRRR-------DLHRSMRRLEEDAT 423
            LDTGD+VLF R C  MGV G ++C   K    T WDH GV+ K  DG     EAA +GVK   L  R+  S +Y + ++++   R    R+ A  ++  + ++  PY+     LV    S  P++  R        DL R M+ +++D T
Sbjct:   21 LDTGDVVLFDRKCNSMGVYGGVICHSAKLFGQTRWDHNGVIYKTDDGKLMFLEAAMNGVKLRPLVDRILHSRSYEVRIQKVEVHRTPEFRQRAADFIRRVVEQDIPYEDRIQVLVNAGASFVPSRVAREQFYHDIVDLKRHMKTIQDDLT 170          
BLAST of jgi.p|Trimin1|138967 vs. uniprot
Match: F0WJW3_9STRA (Mitochondrial Carrier (MC) Family putative n=1 Tax=Albugo laibachii Nc14 TaxID=890382 RepID=F0WJW3_9STRA)

HSP 1 Score: 80.1 bits (196), Expect = 1.150e-14
Identity = 48/113 (42.48%), Postives = 64/113 (56.64%), Query Frame = 1
Query:    1 LDTGDIVLFSRPCQRMGVLGCILCLGTKTVHATPWDHIGVVVK--DKDGTNR------IWEAAFSGVKHYDLHARLQRSSAYMIAVRRLYTERNDAMRESARQYVAEIEQRPY 315
            LDTGDIVLFSRPC +M + G I+C   K    T WDHIGV+V+    +G+ +      + EA  SGVK   L  R+ RS A  IA+RRL   R    +  A+Q+V  ++   Y
Sbjct:   27 LDTGDIVLFSRPCLQMELYGGIICACAKLFGNTDWDHIGVIVRVPTSEGSAKGISEHYLLEATLSGVKLRPLEERILRSRASEIAIRRLQVHRTPEFQREAQQFVQLVQDSKY 139          
BLAST of jgi.p|Trimin1|138967 vs. uniprot
Match: A0A024UU32_9STRA (Uncharacterized protein n=8 Tax=Aphanomyces invadans TaxID=157072 RepID=A0A024UU32_9STRA)

HSP 1 Score: 79.7 bits (195), Expect = 1.540e-14
Identity = 45/149 (30.20%), Postives = 76/149 (51.01%), Query Frame = 1
Query:    1 LDTGDIVLFSRPCQRMGVLGCILCLGTKTVHATPWDHIGVVVKDKDGTNRIWEAAFSGVKHYDLHARLQRSSAYMIAVRRLYTERNDAMRESARQYVAEIEQR--PYKASYAQLVRVAVSQYPAKRRRRDLHRSMRRLEEDATFVESEL 441
            LDTGD+VLF R C  MG+ G ++C   K    T WDH GV+VK  DG     EAA +GVK   L  R+  S +Y + ++++   R    R+ A +++  + ++  PY+     L+    S  P++  R   +  +  L+     ++ ++
Sbjct:   21 LDTGDVVLFDRKCNSMGLYGGVICHSAKLFGQTRWDHNGVIVKTDDGKLMFLEAAMNGVKLRPLIDRILYSRSYEVRIQKVEVHRTPEFRQRAAEFIRRVIEQDIPYEDRIQVLLNAGASFVPSRMAREQFYHDIVELKRQIKTIQDDI 169          
BLAST of jgi.p|Trimin1|138967 vs. uniprot
Match: A0A024GPF7_9STRA (Uncharacterized protein n=2 Tax=Albugo candida TaxID=65357 RepID=A0A024GPF7_9STRA)

HSP 1 Score: 76.6 bits (187), Expect = 1.860e-13
Identity = 45/113 (39.82%), Postives = 65/113 (57.52%), Query Frame = 1
Query:    1 LDTGDIVLFSRPCQRMGVLGCILCLGTKTVHATPWDHIGVVVK-------DKDGTN-RIWEAAFSGVKHYDLHARLQRSSAYMIAVRRLYTERNDAMRESARQYVAEIEQRPY 315
            +DTGDIVLF+RPC +M + G I+C   K    T WDHIGV+V+       +K+ +   + EA  SGVK   L  R+ RS A  I++RRL   R    +++A Q+V  ++   Y
Sbjct:   27 IDTGDIVLFNRPCFQMDLYGGIICTCAKLFGNTDWDHIGVIVRVPASAESEKNVSELHLLEATLSGVKLRPLEDRILRSRANEISIRRLQVHRTSEFQKAAHQFVQLVQDSKY 139          
BLAST of jgi.p|Trimin1|138967 vs. uniprot
Match: A0A418FYT2_9STRA (Cyclic nucleotide-binding domain-containing protein n=2 Tax=Aphanomyces astaci TaxID=112090 RepID=A0A418FYT2_9STRA)

HSP 1 Score: 72.4 bits (176), Expect = 4.970e-12
Identity = 38/107 (35.51%), Postives = 55/107 (51.40%), Query Frame = 1
Query:    1 LDTGDIVLFSRPCQRMGVLGCILCLGTKTVHATPWDHIGVVVKDKDGTNRI-------WEAAFSGVKHYDLHARLQRSSAYMIAVRRLYTERNDAMRESARQYVAEI 300
            LDTGD+VLF R C  MGV G ++C   K    T WDH GV+ K  DG   +        EAA +GVK   L  R+  S +Y + ++++   R    R+ A  ++  +
Sbjct:   21 LDTGDVVLFDRKCNSMGVYGGVICHSAKLFGQTRWDHNGVIYKTDDGVGNLKLRKLMFLEAAMNGVKLRPLVDRILHSRSYEVRIQKVEVHRTPEFRQRAADFIRRV 127          
BLAST of jgi.p|Trimin1|138967 vs. uniprot
Match: A0A397B1S5_9STRA (Cyclic nucleotide-binding domain-containing protein n=1 Tax=Aphanomyces astaci TaxID=112090 RepID=A0A397B1S5_9STRA)

HSP 1 Score: 72.4 bits (176), Expect = 5.200e-12
Identity = 38/107 (35.51%), Postives = 55/107 (51.40%), Query Frame = 1
Query:    1 LDTGDIVLFSRPCQRMGVLGCILCLGTKTVHATPWDHIGVVVKDKDGTNRI-------WEAAFSGVKHYDLHARLQRSSAYMIAVRRLYTERNDAMRESARQYVAEI 300
            LDTGD+VLF R C  MGV G ++C   K    T WDH GV+ K  DG   +        EAA +GVK   L  R+  S +Y + ++++   R    R+ A  ++  +
Sbjct:   21 LDTGDVVLFDRKCNSMGVYGGVICHSAKLFGQTRWDHNGVIYKTDDGVGNLKLRKLMFLEAAMNGVKLRPLVDRILHSRSYEVRIQKVEVHRTPEFRQRAADFIRRV 127          
The following BLAST results are available for this feature:
BLAST of jgi.p|Trimin1|138967 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 14
Match NameE-valueIdentityDescription
A0A835ZEA6_9STRA4.460e-99100.00Uncharacterized protein (Fragment) n=1 Tax=Tribone... [more]
D8LLR0_ECTSI2.090e-2846.36Uncharacterized protein (Fragment) n=1 Tax=Ectocar... [more]
A0A7S1NCK3_9EUGL3.860e-2240.00Hypothetical protein (Fragment) n=1 Tax=Eutreptiel... [more]
A0A7S4CKQ5_9EUGL2.140e-1940.00Hypothetical protein (Fragment) n=1 Tax=Eutreptiel... [more]
W4H8U0_9STRA1.770e-1534.00Uncharacterized protein n=2 Tax=Aphanomyces astaci... [more]
F0WJW3_9STRA1.150e-1442.48Mitochondrial Carrier (MC) Family putative n=1 Tax... [more]
A0A024UU32_9STRA1.540e-1430.20Uncharacterized protein n=8 Tax=Aphanomyces invada... [more]
A0A024GPF7_9STRA1.860e-1339.82Uncharacterized protein n=2 Tax=Albugo candida Tax... [more]
A0A418FYT2_9STRA4.970e-1235.51Cyclic nucleotide-binding domain-containing protei... [more]
A0A397B1S5_9STRA5.200e-1235.51Cyclic nucleotide-binding domain-containing protei... [more]

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
Contig_156contigContig_156:330521..330961 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Tribonema minus UTEX_B_31562021-06-17
Properties
Property NameValue
ProteomeIdTrimin1|138967|gw1.156.32.1
KEGG TC2.A.29.12.2,2.A.29.23
BRITEko00000,ko02000,ko04121
KEGG koko:K10273,ko:K14684,ko:K15085
DescriptioncAMP-dependent protein kinase regulator activity
COG categoryT
Max annot lvl2759|Eukaryota
EggNOG OGsCOG0664@1|root,KOG0036@1|root,KOG0036@2759|Eukaryota,KOG1113@2759|Eukaryota
Evalue1.38e-15
Seed ortholog45157.CMT592CT
Hectar predicted targeting categoryother localisation
Ec32 ortholog descriptionconserved unknown protein
Ec32 orthologEc-04_004830.1
TranscriptId139289
TrackFilteredModels1
ProteinId138967
Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesTypePosition
jgi.p|Trimin1|138967gene_14837Tribonema minus UTEX_B_3156 geneContig_156 330521..330961 -


The following exon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
exon_14837_1exon_14837_1Tribonema minus UTEX_B_3156 exonContig_156 330521..330961 -


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
CDS_14837CDS_14837Tribonema minus UTEX_B_3156 CDSContig_156 330521..330961 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
jgi.p|Trimin1|138967Trimin1|138967|gw1.156.32.1Tribonema minus UTEX_B_3156 polypeptideContig_156 330521..330961 -


Sequences
The following sequences are available for this feature:

spliced messenger RNA

>mRNA_14837 ID=mRNA_14837|Name=jgi.p|Trimin1|138967|organism=Tribonema minus UTEX_B_3156 |type=mRNA|length=441bp|location=Sequence derived from alignment at Contig_156:330521..330961- (Tribonema minus UTEX_B_3156 )|Notes=Excludes all bases but those of type(s): exon.  
CTGGACACAGGCGACATTGTGCTGTTCTCGAGGCCATGTCAGCGCATGGG
TGTGTTGGGCTGCATCCTGTGCCTTGGCACCAAAACGGTTCACGCAACGC
CGTGGGACCACATCGGTGTGGTCGTGAAGGACAAAGATGGCACCAACAGG
ATCTGGGAGGCAGCTTTCAGTGGGGTCAAGCACTACGACCTCCACGCTCG
ACTGCAGCGGAGCAGCGCGTACATGATAGCTGTGCGCCGGCTGTACACTG
AGAGGAACGATGCCATGCGGGAATCGGCTCGCCAATACGTGGCAGAAATC
GAGCAGCGCCCTTACAAAGCCAGCTACGCTCAACTCGTCAGGGTCGCAGT
CAGCCAGTACCCCGCCAAACGCCGACGCCGCGACCTGCACCGCAGCATGC
GGCGGCTCGAGGAGGACGCAACGTTTGTCGAATCAGAGCTC
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protein sequence of jgi.p|Trimin1|138967

>Trimin1|138967|gw1.156.32.1 ID=Trimin1|138967|gw1.156.32.1|Name=jgi.p|Trimin1|138967|organism=Tribonema minus UTEX_B_3156 |type=polypeptide|length=147bp
LDTGDIVLFSRPCQRMGVLGCILCLGTKTVHATPWDHIGVVVKDKDGTNR
IWEAAFSGVKHYDLHARLQRSSAYMIAVRRLYTERNDAMRESARQYVAEI
EQRPYKASYAQLVRVAVSQYPAKRRRRDLHRSMRRLEEDATFVESEL
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mRNA from alignment at Contig_156:330521..330961-

Legend: exonpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_14837 ID=mRNA_14837|Name=jgi.p|Trimin1|138967|organism=Tribonema minus UTEX_B_3156 |type=mRNA|length=441bp|location=Sequence derived from alignment at Contig_156:330521..330961- (Tribonema minus UTEX_B_3156 )
CTGGACACAGGCGACATTGTGCTGTTCTCGAGGCCATGTCAGCGCATGGG TGTGTTGGGCTGCATCCTGTGCCTTGGCACCAAAACGGTTCACGCAACGC CGTGGGACCACATCGGTGTGGTCGTGAAGGACAAAGATGGCACCAACAGG ATCTGGGAGGCAGCTTTCAGTGGGGTCAAGCACTACGACCTCCACGCTCG ACTGCAGCGGAGCAGCGCGTACATGATAGCTGTGCGCCGGCTGTACACTG AGAGGAACGATGCCATGCGGGAATCGGCTCGCCAATACGTGGCAGAAATC GAGCAGCGCCCTTACAAAGCCAGCTACGCTCAACTCGTCAGGGTCGCAGT CAGCCAGTACCCCGCCAAACGCCGACGCCGCGACCTGCACCGCAGCATGC GGCGGCTCGAGGAGGACGCAACGTTTGTCGAATCAGAGCTC
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Coding sequence (CDS) from alignment at Contig_156:330521..330961-

>mRNA_14837 ID=mRNA_14837|Name=jgi.p|Trimin1|138967|organism=Tribonema minus UTEX_B_3156 |type=CDS|length=441bp|location=Sequence derived from alignment at Contig_156:330521..330961- (Tribonema minus UTEX_B_3156 )
CTGGACACAGGCGACATTGTGCTGTTCTCGAGGCCATGTCAGCGCATGGG
TGTGTTGGGCTGCATCCTGTGCCTTGGCACCAAAACGGTTCACGCAACGC
CGTGGGACCACATCGGTGTGGTCGTGAAGGACAAAGATGGCACCAACAGG
ATCTGGGAGGCAGCTTTCAGTGGGGTCAAGCACTACGACCTCCACGCTCG
ACTGCAGCGGAGCAGCGCGTACATGATAGCTGTGCGCCGGCTGTACACTG
AGAGGAACGATGCCATGCGGGAATCGGCTCGCCAATACGTGGCAGAAATC
GAGCAGCGCCCTTACAAAGCCAGCTACGCTCAACTCGTCAGGGTCGCAGT
CAGCCAGTACCCCGCCAAACGCCGACGCCGCGACCTGCACCGCAGCATGC
GGCGGCTCGAGGAGGACGCAACGTTTGTCGAATCAGAGCTC
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