mRNA_14817 (mRNA) Tribonema minus UTEX_B_3156
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Overview
Homology
BLAST of jgi.p|Trimin1|177633 vs. uniprot
Match: A0A835ZAA5_9STRA (Thiamine diphosphate-binding protein (Fragment) n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A835ZAA5_9STRA) HSP 1 Score: 511 bits (1316), Expect = 1.060e-182 Identity = 269/269 (100.00%), Postives = 269/269 (100.00%), Query Frame = 1
Query: 1 MGGEGRLVEPAIARCVSAHLSPGAGLFLSNSMPCRDMDTFAQHSGPGNLCHVAMNRGANGIDGVVSSALGYAVGLRRPVTLLIGDMALLHDVNALHLLRQIPHPITIVCVNNGGSAIFSFLPIARHADVFSPYFDTPHDLSFEGVCSTFGVRYARATTPQEFERIYRESQQPQXXXXXXXXXTTTVQHLFIEAVTDRADNVQVHRQLGAAATTAAHHVLLNDVHLAWDLHLPGGTLHSGRSSSXXXXXXRGARGTVVLLHGFMGSRQDW 807
MGGEGRLVEPAIARCVSAHLSPGAGLFLSNSMPCRDMDTFAQHSGPGNLCHVAMNRGANGIDGVVSSALGYAVGLRRPVTLLIGDMALLHDVNALHLLRQIPHPITIVCVNNGGSAIFSFLPIARHADVFSPYFDTPHDLSFEGVCSTFGVRYARATTPQEFERIYRESQQPQXXXXXXXXXTTTVQHLFIEAVTDRADNVQVHRQLGAAATTAAHHVLLNDVHLAWDLHLPGGTLHSGRSSSXXXXXXRGARGTVVLLHGFMGSRQDW
Sbjct: 1 MGGEGRLVEPAIARCVSAHLSPGAGLFLSNSMPCRDMDTFAQHSGPGNLCHVAMNRGANGIDGVVSSALGYAVGLRRPVTLLIGDMALLHDVNALHLLRQIPHPITIVCVNNGGSAIFSFLPIARHADVFSPYFDTPHDLSFEGVCSTFGVRYARATTPQEFERIYRESQQPQXXXXXXXXXTTTVQHLFIEAVTDRADNVQVHRQLGAAATTAAHHVLLNDVHLAWDLHLPGGTLHSGRSSSXXXXXXRGARGTVVLLHGFMGSRQDW 269
BLAST of jgi.p|Trimin1|177633 vs. uniprot
Match: D8LMF2_ECTSI (Similar to Isochorismate Synthase n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D8LMF2_ECTSI) HSP 1 Score: 234 bits (596), Expect = 1.860e-66 Identity = 147/298 (49.33%), Postives = 173/298 (58.05%), Query Frame = 1
Query: 19 LVEPAIARCVSAHLSPGAGLFLSNSMPCRDMDTFAQH--------------SGPGNLCHVAMNRGANGIDGVVSSALGYAVGLRRPVTLLIGDMALLHDVNALHLLRQIPHP----ITIVCVNNGGSAIFSFLPIA--RHADVFSPYFDTPHDLSFEGVCSTFGVRYARATTPQEFERIYRESQQPQXXXXXXXXXTTTVQ-HLFIEAVTDRADNVQVHRQLGAAATTAAHHVLLNDVHLAWDLH--------------LPGGTLHSGRSSSXXXXXXRGARGTVVLLHGFMGSRQDW 807
L EP +A CVS H+ P AGLFLS SMPCRD++ FA SG L VA NRGA+GIDGV SSA+GYA GLR TLLIGDMA LHD+ +LH L+ + +T+VCVNNGG IFSFLPIA RH D FSP FDTPH + FEGVC + G+ Y RATT +EF Y ESQ XXXXXXX H FIEAVT R +N+ VHR LG AA LL V L W+ + G+L GR + T++LLHGFMGS++DW
Sbjct: 1394 LTEPFVAWCVSRHIDPAAGLFLSASMPCRDVEVFADSGLGDLDGRGEEDRGSGGRRLSDVASNRGASGIDGVFSSAMGYAAGLRSAATLLIGDMATLHDLGSLHALKGLDAAGSCSVTMVCVNNGGGGIFSFLPIADARHGDAFSPLFDTPHSVDFEGVCLSMGLEYRRATTAREFRSAYLESQGVLGGXXXXXXXXXXXXXHFFIEAVTCREENLPVHRSLGGIGRAAALDHLLRGVRLGWEFTPAPVARTWPPSPAGVSNGSLGRGRGGGDKK------KPTLLLLHGFMGSKEDW 1685
BLAST of jgi.p|Trimin1|177633 vs. uniprot
Match: A0A4D9D2W1_9STRA (MR_MLE domain-containing protein n=6 Tax=Monodopsidaceae TaxID=425072 RepID=A0A4D9D2W1_9STRA) HSP 1 Score: 213 bits (541), Expect = 4.260e-59 Identity = 128/277 (46.21%), Postives = 156/277 (56.32%), Query Frame = 1
Query: 19 LVEPAIARCVSAHLSPGAGLFLSNSMPCRDMDTFAQ-------HSGPGNLCHVAMNRGANGIDGVVSSALGYAVGLRRPVTLLIGDMALLHDVNALHLLR------QIPH-PITIVCVNNGGSAIFSFLPIARHADVFSPYFDTPHDLSFEGVCSTFGVRYARATTPQEFERIYRESQQPQXXXXXXXXXTTTVQHLFIEAVTDRADNVQVHRQLGAAATTAAHHVLLNDVHLAWDLHLPGGTLHSGRSSSXXXXXXRGARGTVVLLHGFMGSRQDW 807
L EP A V+ L G GLFLSNSMP RDM+TFA S P L VAMNRGA+GIDG++SSA+GYA GL +PVTLL+GDMA LHD+NALH L P P+T+V VNNGG IFSFLPIARHADVFSPYFD+PHDL F + FG+ Y + + Q + IE VTDRA NV++HRQLGA T H L + L W + +G + T++LLHGF+G ++DW
Sbjct: 986 LNEPMTAHLVARLLPAGHGLFLSNSMPVRDMETFATLASTTAAPSAPAPLASVAMNRGASGIDGILSSAMGYAAGLGKPVTLLVGDMACLHDLNALHALSGASASASAPDTPVTVVLVNNGGGGIFSFLPIARHADVFSPYFDSPHDLHFGPITQAFGLPYHLCKSAGDLVAALHSCQ-------------AGGRSSLIEVVTDRAQNVRIHRQLGAQIRTTVHAGLSQLLRLDW--------IRTGPRTKP----------TLLLLHGFLGCKEDW 1231
BLAST of jgi.p|Trimin1|177633 vs. uniprot
Match: A0A1V0DD88_9BACT (2-succinyl-5-enolpyruvyl-6-hydroxy-3-cyclohexene-1-carboxylate synthase n=2 Tax=Bacteroidetes TaxID=976 RepID=A0A1V0DD88_9BACT) HSP 1 Score: 199 bits (506), Expect = 2.430e-56 Identity = 109/210 (51.90%), Postives = 134/210 (63.81%), Query Frame = 1
Query: 10 EGRLVEPAIARCVSAHLSPGAGLFLSNSMPCRDMDTFAQHSGPGNLCHVAMNRGANGIDGVVSSALGYAVGLRRPVTLLIGDMALLHDVNALHLLRQIPHPITIVCVNNGGSAIFSFLPIARHADVFSPYFDTPHDLSFEGVCSTFGVRYARATTPQEFERIYRESQQPQXXXXXXXXXTTTVQHLFIEAVTDRADNVQVHRQLGAAATT 639
+G L EP +AR V+ HL P GLFL++SMP RD D +A G VA NRGA+GIDG V+SA G+A GL RPVTLLIGD+ALLHD+N+L LLR++P P+ +V +NN G IF FLPIA+HA VF PYF TPH L+FE + FG+ YAR TP FE YRE+ T+ IE TDR N +HR+L AA T
Sbjct: 387 DGTLSEPLVARLVTRHLPPEHGLFLASSMPVRDADMYAV--GGAAAVPVAANRGASGIDGTVASAAGFAAGLARPVTLLIGDLALLHDLNSLALLRRLPVPVVVVAINNDGGGIFHFLPIAKHAGVFEPYFGTPHGLTFEAAAALFGLAYARPETPAAFEAAYREA---------VHRPAATL----IEVRTDRTANAALHRRLLAAVQT 581
BLAST of jgi.p|Trimin1|177633 vs. uniprot
Match: A0A0G4GZP4_VITBC (MR_MLE domain-containing protein n=5 Tax=Vitrella brassicaformis TaxID=1169539 RepID=A0A0G4GZP4_VITBC) HSP 1 Score: 192 bits (487), Expect = 7.280e-52 Identity = 117/277 (42.24%), Postives = 152/277 (54.87%), Query Frame = 1
Query: 19 LVEPAIARCVSAHLSPGAGLFLSNSMPCRDMDTFAQ------------HSGPGNLCHVAMNRGANGIDGVVSSALGYAVGLRRPVTLLIGDMALLHDVNALHLLRQIPHPITIVCVNNGGSAIFSFLPIARHADVFSPYFDTPHDLSFEGVCSTFGVRYARATTPQEFER-IYRESQQPQXXXXXXXXXTTTVQHLFIEAV-TDRADNVQVHRQLGAAATTAAHHVLLNDVHLAWDLHLPGGTLHSGRSSSXXXXXXRGARGTVVLLHGFMGSRQDW 807
L EP +AR ++ GLFLS+SMP RD D+F S G + VA NRGANGIDGV+ SA+GY++GL +PVT+L+GD+A LHD+ LH L+Q +++V VNNGG IF FLPIA H DVFSP FDTPHD+SFEG+C++ G+ Y+R T +E + +S P+ IEAV TDR NV +HR + AA A L + W GG S TVV LHG++GS+ DW
Sbjct: 1107 LCEPEVARLAASSAQSTGGLFLSSSMPIRDADSFGSLPDAIATAPDVGRSDEGPVGCVASNRGANGIDGVLHSAIGYSLGLGQPVTVLLGDVAALHDMGGLHTLKQSGASVSVVVVNNGGGGIFHFLPIAAHKDVFSPLFDTPHDVSFEGICASVGLPYSRVKTSEELSAAVSGKSAFPRV----------------IEAVCTDRESNVSIHRDIQRAAGDAVVTHLARSIRWCW---WRGGCRDSP---------------TVVFLHGWLGSKDDW 1349
BLAST of jgi.p|Trimin1|177633 vs. uniprot
Match: A0A496PRM4_9BACT (2-succinyl-5-enolpyruvyl-6-hydroxy-3-cyclohexene-1-carboxylate synthase n=1 Tax=candidate division Zixibacteria bacterium TaxID=2053527 RepID=A0A496PRM4_9BACT) HSP 1 Score: 186 bits (473), Expect = 1.680e-51 Identity = 95/201 (47.26%), Postives = 131/201 (65.17%), Query Frame = 1
Query: 19 LVEPAIARCVSAHLSPGAGLFLSNSMPCRDMDTFAQHSGPGNLCHVAMNRGANGIDGVVSSALGYAVGLRRPVTLLIGDMALLHDVNALHLLRQIPHPITIVCVNNGGSAIFSFLPIARHADVFSPYFDTPHDLSFEGVCSTFGVRYARATTPQEFERIYRESQQPQXXXXXXXXXTTTVQHLFIEAVTDRADNVQVHRQL 621
L EP++AR +S H++P A LFL NSMP RDMD+F SGP V NRGA+GIDGVV++A G+A+G + VTLL+GD+ALLHD+N+L LLRQ+ P+T++ +NN G IFSFLPIA+ D+F ++ TPH+++F+ FG+ Y +T +EF+ +YR SQ T IE TDR DN + H +L
Sbjct: 399 LSEPSVARLISQHINPKACLFLGNSMPIRDMDSFTDPSGP--AVPVGCNRGASGIDGVVATAFGFALGSDKKVTLLLGDLALLHDINSLCLLRQLEQPMTVIVINNNGGGIFSFLPIAKRNDIFEQFWGTPHNMNFKYAARQFGLGYECPSTLREFQEVYRSSQ-------------TEDSSTLIEVKTDREDNARFHEEL 584
BLAST of jgi.p|Trimin1|177633 vs. uniprot
Match: A0A1Q7ZRX4_9CYAN (TPP_enzyme_C domain-containing protein n=1 Tax=Cyanobacteria bacterium 13_1_40CM_2_61_4 TaxID=1805101 RepID=A0A1Q7ZRX4_9CYAN) HSP 1 Score: 177 bits (449), Expect = 2.300e-51 Identity = 100/212 (47.17%), Postives = 127/212 (59.91%), Query Frame = 1
Query: 19 LVEPAIARCVSAHLSPGAGLFLSNSMPCRDMDTFAQHSGPGNLCHVAMNRGANGIDGVVSSALGYAVGLRRPVTLLIGDMALLHDVNALHLLRQIPHPITIVCVNNGGSAIFSFLPIARHADVFSPYFDTPHDLSFEGVCSTFGVRYARATTPQEFERIYRESQQPQXXXXXXXXXTTTVQHLFIEAVTDRADNVQVH----RQLGAAATTA 642
L EP +AR VS + GLFL +SMP RDM+TFA GP VA NRGA+GIDG V+SA G+A GL VTLLIGD+ALLHD+N+L L R + P+TIV +NN G IFSFLPIA+ D+F YF TPH+L FEG FG+ Y R ++ F YR + + Q Q IE VT R +N +H R++ A ++A
Sbjct: 51 LSEPLVARLVSQEIGAERGLFLGSSMPVRDMNTFAAPGGPST--RVAANRGASGIDGTVASATGFAQGLNHRVTLLIGDLALLHDLNSLSLTRSLDAPMTIVVLNNNGGGIFSFLPIAQFEDIFERYFGTPHNLDFEGAGRMFGLEYVRPSSKSAFVEAYRAAAKKQ-------------QSTLIEVVTQRKENYDLHIALQREISAKLSSA 247
BLAST of jgi.p|Trimin1|177633 vs. uniprot
Match: A0A496Z2F4_9DELT (2-succinyl-5-enolpyruvyl-6-hydroxy-3-cyclohexene-1-carboxylate synthase n=1 Tax=Deltaproteobacteria bacterium TaxID=2026735 RepID=A0A496Z2F4_9DELT) HSP 1 Score: 184 bits (467), Expect = 1.080e-50 Identity = 95/207 (45.89%), Postives = 128/207 (61.84%), Query Frame = 1
Query: 1 MGGEGRLVEPAIARCVSAHLSPGAGLFLSNSMPCRDMDTFAQHSGPGNLCHVAMNRGANGIDGVVSSALGYAVGLRRPVTLLIGDMALLHDVNALHLLRQIPHPITIVCVNNGGSAIFSFLPIARHADVFSPYFDTPHDLSFEGVCSTFGVRYARATTPQEFERIYRESQQPQXXXXXXXXXTTTVQHLFIEAVTDRADNVQVHRQL 621
+G + EPA AR +S ++S GLFL++SMP RDMD FA GP VA NRGA+GIDG ++SA G+A GLRRPVTLLIGD+A LHD+N+L +L+ + HP+ IV +NN G IFSFLPIA H +F PYF TPH+L+FE FG Y T F Y+ +Q + + IE +DR++N ++H+ +
Sbjct: 384 IGSDTPFSEPACARLISKYISGDTGLFLASSMPIRDMDMFADVKGP--AVPVACNRGASGIDGTIASAAGFATGLRRPVTLLIGDLAFLHDLNSLAMLKSLSHPLVIVVINNNGGGIFSFLPIAEHKAIFEPYFSTPHNLTFENAARMFGFDYHAPETTDSFVLCYQSAQ-------------SKGRSTIIEVKSDRSENYKIHQAI 575
BLAST of jgi.p|Trimin1|177633 vs. uniprot
Match: A0A523YYJ1_9BACT (2-succinyl-5-enolpyruvyl-6-hydroxy-3-cyclohexene-1-carboxylic-acid synthase (Fragment) n=1 Tax=candidate division Zixibacteria bacterium TaxID=2053527 RepID=A0A523YYJ1_9BACT) HSP 1 Score: 180 bits (456), Expect = 1.330e-49 Identity = 95/204 (46.57%), Postives = 130/204 (63.73%), Query Frame = 1
Query: 16 RLVEPAIARCVSAHLSPGAGLFLSNSMPCRDMDTFAQHSGPGNLCHVAMNRGANGIDGVVSSALGYAVGLRRPVTLLIGDMALLHDVNALHLLRQI--PHPITIVCVNNGGSAIFSFLPIARHADVFSPYFDTPHDLSFEGVCSTFGVRYARATTPQEFERIYRESQQPQXXXXXXXXXTTTVQHLFIEAVTDRADNVQVHRQL 621
RL EPA+AR +S ++ P +GLF+SNSMP RDMD +A GP + VA NRGA+GIDG+++SA G+A GL +PVTLLIGD+A LHDVN+L LL+ + PHP+ IV +NN G +FSFLPIA+ + F P+F TPH LSF+ FG+ Y + + F Y +Q+ + IE +DRA+N + H+ L
Sbjct: 318 RLSEPAVARLISQNIRPDSGLFVSNSMPIRDMDMYADPHGP--VVTVACNRGASGIDGIIASATGFACGLNKPVTLLIGDLAFLHDVNSLALLKSLAHPHPLVIVVINNDGGGLFSFLPIAKVKEAFEPFFGTPHGLSFDKAADMFGLDYYCPDSKESFVTSYLSAQKEN-------------RSAIIEIKSDRAENYRFHQAL 506
BLAST of jgi.p|Trimin1|177633 vs. uniprot
Match: UPI000ABB1D1D (2-succinyl-5-enolpyruvyl-6-hydroxy-3- cyclohexene-1-carboxylic-acid synthase n=1 Tax=Rubrobacter aplysinae TaxID=909625 RepID=UPI000ABB1D1D) HSP 1 Score: 180 bits (456), Expect = 4.570e-49 Identity = 94/203 (46.31%), Postives = 129/203 (63.55%), Query Frame = 1
Query: 13 GRLVEPAIARCVSAHLSPGAGLFLSNSMPCRDMDTFAQHSGPGNLCHVAMNRGANGIDGVVSSALGYAVGLRRPVTLLIGDMALLHDVNALHLLRQIPHPITIVCVNNGGSAIFSFLPIARHADVFSPYFDTPHDLSFEGVCSTFGVRYARATTPQEFERIYRESQQPQXXXXXXXXXTTTVQHLFIEAVTDRADNVQVHRQL 621
G + EP +AR VS L+ G GLFL++SMP RDMD +A+ G VA NRGA+GIDG V+SA G+ GL RP L+IGD+ALLHD+N+L +LR +PHP+ +V +NN G IFSFLP++ H D+F PYF TPH L FE + FG+ Y R + F +RE+ + + ++T+ IE T+R N+ +HR L
Sbjct: 394 GEVSEPLVARAVSRLLAEGWGLFLASSMPVRDMDAYARTGGAEP--QVATNRGASGIDGTVASAAGFVRGLGRPAVLVIGDLALLHDLNSLAMLRNLPHPLVVVAINNDGGGIFSFLPVSDHGDIFEPYFGTPHGLGFESAAAMFGLHYERPRNGEAFAAAFREAAERR---------SSTL----IEVKTNRDTNLALHRDL 581 The following BLAST results are available for this feature:
BLAST of jgi.p|Trimin1|177633 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90) Total hits: 25
Pagesback to topAlignments
The following features are aligned
Analyses
This mRNA is derived from or has results from the following analyses
Properties
Relationships
This mRNA is a part of the following gene feature(s):
The following exon feature(s) are a part of this mRNA:
The following CDS feature(s) are a part of this mRNA:
The following polypeptide feature(s) derives from this mRNA:
Sequences
The following sequences are available for this feature:
spliced messenger RNA >mRNA_14817 ID=mRNA_14817|Name=jgi.p|Trimin1|177633|organism=Tribonema minus UTEX_B_3156 |type=mRNA|length=807bp|location=Sequence derived from alignment at Contig_156:226081..227259+ (Tribonema minus UTEX_B_3156 )|Notes=Excludes all bases but those of type(s): exon. ATGGGGGGTGAGGGGAGGCTGGTGGAGCCGGCCATCGCGCGCTGCGTGTCback to top protein sequence of jgi.p|Trimin1|177633 >Trimin1|177633|e_gw1.156.3.1 ID=Trimin1|177633|e_gw1.156.3.1|Name=jgi.p|Trimin1|177633|organism=Tribonema minus UTEX_B_3156 |type=polypeptide|length=269bp MGGEGRLVEPAIARCVSAHLSPGAGLFLSNSMPCRDMDTFAQHSGPGNLCback to top mRNA from alignment at Contig_156:226081..227259+ Legend: exonpolypeptideCDS Hold the cursor over a type above to highlight its positions in the sequence below.>mRNA_14817 ID=mRNA_14817|Name=jgi.p|Trimin1|177633|organism=Tribonema minus UTEX_B_3156 |type=mRNA|length=1179bp|location=Sequence derived from alignment at Contig_156:226081..227259+ (Tribonema minus UTEX_B_3156 )back to top Coding sequence (CDS) from alignment at Contig_156:226081..227259+ >mRNA_14817 ID=mRNA_14817|Name=jgi.p|Trimin1|177633|organism=Tribonema minus UTEX_B_3156 |type=CDS|length=807bp|location=Sequence derived from alignment at Contig_156:226081..227259+ (Tribonema minus UTEX_B_3156 )back to top |