mRNA_14817 (mRNA) Tribonema minus UTEX_B_3156

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
Namejgi.p|Trimin1|177633
Unique NamemRNA_14817
TypemRNA
OrganismTribonema minus UTEX_B_3156 (Tribonema minus UTEX_B_3156 )
Homology
BLAST of jgi.p|Trimin1|177633 vs. uniprot
Match: A0A835ZAA5_9STRA (Thiamine diphosphate-binding protein (Fragment) n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A835ZAA5_9STRA)

HSP 1 Score: 511 bits (1316), Expect = 1.060e-182
Identity = 269/269 (100.00%), Postives = 269/269 (100.00%), Query Frame = 1
Query:    1 MGGEGRLVEPAIARCVSAHLSPGAGLFLSNSMPCRDMDTFAQHSGPGNLCHVAMNRGANGIDGVVSSALGYAVGLRRPVTLLIGDMALLHDVNALHLLRQIPHPITIVCVNNGGSAIFSFLPIARHADVFSPYFDTPHDLSFEGVCSTFGVRYARATTPQEFERIYRESQQPQXXXXXXXXXTTTVQHLFIEAVTDRADNVQVHRQLGAAATTAAHHVLLNDVHLAWDLHLPGGTLHSGRSSSXXXXXXRGARGTVVLLHGFMGSRQDW 807
            MGGEGRLVEPAIARCVSAHLSPGAGLFLSNSMPCRDMDTFAQHSGPGNLCHVAMNRGANGIDGVVSSALGYAVGLRRPVTLLIGDMALLHDVNALHLLRQIPHPITIVCVNNGGSAIFSFLPIARHADVFSPYFDTPHDLSFEGVCSTFGVRYARATTPQEFERIYRESQQPQXXXXXXXXXTTTVQHLFIEAVTDRADNVQVHRQLGAAATTAAHHVLLNDVHLAWDLHLPGGTLHSGRSSSXXXXXXRGARGTVVLLHGFMGSRQDW
Sbjct:    1 MGGEGRLVEPAIARCVSAHLSPGAGLFLSNSMPCRDMDTFAQHSGPGNLCHVAMNRGANGIDGVVSSALGYAVGLRRPVTLLIGDMALLHDVNALHLLRQIPHPITIVCVNNGGSAIFSFLPIARHADVFSPYFDTPHDLSFEGVCSTFGVRYARATTPQEFERIYRESQQPQXXXXXXXXXTTTVQHLFIEAVTDRADNVQVHRQLGAAATTAAHHVLLNDVHLAWDLHLPGGTLHSGRSSSXXXXXXRGARGTVVLLHGFMGSRQDW 269          
BLAST of jgi.p|Trimin1|177633 vs. uniprot
Match: D8LMF2_ECTSI (Similar to Isochorismate Synthase n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D8LMF2_ECTSI)

HSP 1 Score: 234 bits (596), Expect = 1.860e-66
Identity = 147/298 (49.33%), Postives = 173/298 (58.05%), Query Frame = 1
Query:   19 LVEPAIARCVSAHLSPGAGLFLSNSMPCRDMDTFAQH--------------SGPGNLCHVAMNRGANGIDGVVSSALGYAVGLRRPVTLLIGDMALLHDVNALHLLRQIPHP----ITIVCVNNGGSAIFSFLPIA--RHADVFSPYFDTPHDLSFEGVCSTFGVRYARATTPQEFERIYRESQQPQXXXXXXXXXTTTVQ-HLFIEAVTDRADNVQVHRQLGAAATTAAHHVLLNDVHLAWDLH--------------LPGGTLHSGRSSSXXXXXXRGARGTVVLLHGFMGSRQDW 807
            L EP +A CVS H+ P AGLFLS SMPCRD++ FA                SG   L  VA NRGA+GIDGV SSA+GYA GLR   TLLIGDMA LHD+ +LH L+ +       +T+VCVNNGG  IFSFLPIA  RH D FSP FDTPH + FEGVC + G+ Y RATT +EF   Y ESQ     XXXXXXX      H FIEAVT R +N+ VHR LG     AA   LL  V L W+                +  G+L  GR            + T++LLHGFMGS++DW
Sbjct: 1394 LTEPFVAWCVSRHIDPAAGLFLSASMPCRDVEVFADSGLGDLDGRGEEDRGSGGRRLSDVASNRGASGIDGVFSSAMGYAAGLRSAATLLIGDMATLHDLGSLHALKGLDAAGSCSVTMVCVNNGGGGIFSFLPIADARHGDAFSPLFDTPHSVDFEGVCLSMGLEYRRATTAREFRSAYLESQGVLGGXXXXXXXXXXXXXHFFIEAVTCREENLPVHRSLGGIGRAAALDHLLRGVRLGWEFTPAPVARTWPPSPAGVSNGSLGRGRGGGDKK------KPTLLLLHGFMGSKEDW 1685          
BLAST of jgi.p|Trimin1|177633 vs. uniprot
Match: A0A4D9D2W1_9STRA (MR_MLE domain-containing protein n=6 Tax=Monodopsidaceae TaxID=425072 RepID=A0A4D9D2W1_9STRA)

HSP 1 Score: 213 bits (541), Expect = 4.260e-59
Identity = 128/277 (46.21%), Postives = 156/277 (56.32%), Query Frame = 1
Query:   19 LVEPAIARCVSAHLSPGAGLFLSNSMPCRDMDTFAQ-------HSGPGNLCHVAMNRGANGIDGVVSSALGYAVGLRRPVTLLIGDMALLHDVNALHLLR------QIPH-PITIVCVNNGGSAIFSFLPIARHADVFSPYFDTPHDLSFEGVCSTFGVRYARATTPQEFERIYRESQQPQXXXXXXXXXTTTVQHLFIEAVTDRADNVQVHRQLGAAATTAAHHVLLNDVHLAWDLHLPGGTLHSGRSSSXXXXXXRGARGTVVLLHGFMGSRQDW 807
            L EP  A  V+  L  G GLFLSNSMP RDM+TFA         S P  L  VAMNRGA+GIDG++SSA+GYA GL +PVTLL+GDMA LHD+NALH L         P  P+T+V VNNGG  IFSFLPIARHADVFSPYFD+PHDL F  +   FG+ Y    +  +        Q                +   IE VTDRA NV++HRQLGA   T  H  L   + L W        + +G  +            T++LLHGF+G ++DW
Sbjct:  986 LNEPMTAHLVARLLPAGHGLFLSNSMPVRDMETFATLASTTAAPSAPAPLASVAMNRGASGIDGILSSAMGYAAGLGKPVTLLVGDMACLHDLNALHALSGASASASAPDTPVTVVLVNNGGGGIFSFLPIARHADVFSPYFDSPHDLHFGPITQAFGLPYHLCKSAGDLVAALHSCQ-------------AGGRSSLIEVVTDRAQNVRIHRQLGAQIRTTVHAGLSQLLRLDW--------IRTGPRTKP----------TLLLLHGFLGCKEDW 1231          
BLAST of jgi.p|Trimin1|177633 vs. uniprot
Match: A0A1V0DD88_9BACT (2-succinyl-5-enolpyruvyl-6-hydroxy-3-cyclohexene-1-carboxylate synthase n=2 Tax=Bacteroidetes TaxID=976 RepID=A0A1V0DD88_9BACT)

HSP 1 Score: 199 bits (506), Expect = 2.430e-56
Identity = 109/210 (51.90%), Postives = 134/210 (63.81%), Query Frame = 1
Query:   10 EGRLVEPAIARCVSAHLSPGAGLFLSNSMPCRDMDTFAQHSGPGNLCHVAMNRGANGIDGVVSSALGYAVGLRRPVTLLIGDMALLHDVNALHLLRQIPHPITIVCVNNGGSAIFSFLPIARHADVFSPYFDTPHDLSFEGVCSTFGVRYARATTPQEFERIYRESQQPQXXXXXXXXXTTTVQHLFIEAVTDRADNVQVHRQLGAAATT 639
            +G L EP +AR V+ HL P  GLFL++SMP RD D +A   G      VA NRGA+GIDG V+SA G+A GL RPVTLLIGD+ALLHD+N+L LLR++P P+ +V +NN G  IF FLPIA+HA VF PYF TPH L+FE   + FG+ YAR  TP  FE  YRE+               T+    IE  TDR  N  +HR+L AA  T
Sbjct:  387 DGTLSEPLVARLVTRHLPPEHGLFLASSMPVRDADMYAV--GGAAAVPVAANRGASGIDGTVASAAGFAAGLARPVTLLIGDLALLHDLNSLALLRRLPVPVVVVAINNDGGGIFHFLPIAKHAGVFEPYFGTPHGLTFEAAAALFGLAYARPETPAAFEAAYREA---------VHRPAATL----IEVRTDRTANAALHRRLLAAVQT 581          
BLAST of jgi.p|Trimin1|177633 vs. uniprot
Match: A0A0G4GZP4_VITBC (MR_MLE domain-containing protein n=5 Tax=Vitrella brassicaformis TaxID=1169539 RepID=A0A0G4GZP4_VITBC)

HSP 1 Score: 192 bits (487), Expect = 7.280e-52
Identity = 117/277 (42.24%), Postives = 152/277 (54.87%), Query Frame = 1
Query:   19 LVEPAIARCVSAHLSPGAGLFLSNSMPCRDMDTFAQ------------HSGPGNLCHVAMNRGANGIDGVVSSALGYAVGLRRPVTLLIGDMALLHDVNALHLLRQIPHPITIVCVNNGGSAIFSFLPIARHADVFSPYFDTPHDLSFEGVCSTFGVRYARATTPQEFER-IYRESQQPQXXXXXXXXXTTTVQHLFIEAV-TDRADNVQVHRQLGAAATTAAHHVLLNDVHLAWDLHLPGGTLHSGRSSSXXXXXXRGARGTVVLLHGFMGSRQDW 807
            L EP +AR  ++      GLFLS+SMP RD D+F               S  G +  VA NRGANGIDGV+ SA+GY++GL +PVT+L+GD+A LHD+  LH L+Q    +++V VNNGG  IF FLPIA H DVFSP FDTPHD+SFEG+C++ G+ Y+R  T +E    +  +S  P+                 IEAV TDR  NV +HR +  AA  A    L   +   W     GG   S                TVV LHG++GS+ DW
Sbjct: 1107 LCEPEVARLAASSAQSTGGLFLSSSMPIRDADSFGSLPDAIATAPDVGRSDEGPVGCVASNRGANGIDGVLHSAIGYSLGLGQPVTVLLGDVAALHDMGGLHTLKQSGASVSVVVVNNGGGGIFHFLPIAAHKDVFSPLFDTPHDVSFEGICASVGLPYSRVKTSEELSAAVSGKSAFPRV----------------IEAVCTDRESNVSIHRDIQRAAGDAVVTHLARSIRWCW---WRGGCRDSP---------------TVVFLHGWLGSKDDW 1349          
BLAST of jgi.p|Trimin1|177633 vs. uniprot
Match: A0A496PRM4_9BACT (2-succinyl-5-enolpyruvyl-6-hydroxy-3-cyclohexene-1-carboxylate synthase n=1 Tax=candidate division Zixibacteria bacterium TaxID=2053527 RepID=A0A496PRM4_9BACT)

HSP 1 Score: 186 bits (473), Expect = 1.680e-51
Identity = 95/201 (47.26%), Postives = 131/201 (65.17%), Query Frame = 1
Query:   19 LVEPAIARCVSAHLSPGAGLFLSNSMPCRDMDTFAQHSGPGNLCHVAMNRGANGIDGVVSSALGYAVGLRRPVTLLIGDMALLHDVNALHLLRQIPHPITIVCVNNGGSAIFSFLPIARHADVFSPYFDTPHDLSFEGVCSTFGVRYARATTPQEFERIYRESQQPQXXXXXXXXXTTTVQHLFIEAVTDRADNVQVHRQL 621
            L EP++AR +S H++P A LFL NSMP RDMD+F   SGP     V  NRGA+GIDGVV++A G+A+G  + VTLL+GD+ALLHD+N+L LLRQ+  P+T++ +NN G  IFSFLPIA+  D+F  ++ TPH+++F+     FG+ Y   +T +EF+ +YR SQ             T      IE  TDR DN + H +L
Sbjct:  399 LSEPSVARLISQHINPKACLFLGNSMPIRDMDSFTDPSGP--AVPVGCNRGASGIDGVVATAFGFALGSDKKVTLLLGDLALLHDINSLCLLRQLEQPMTVIVINNNGGGIFSFLPIAKRNDIFEQFWGTPHNMNFKYAARQFGLGYECPSTLREFQEVYRSSQ-------------TEDSSTLIEVKTDREDNARFHEEL 584          
BLAST of jgi.p|Trimin1|177633 vs. uniprot
Match: A0A1Q7ZRX4_9CYAN (TPP_enzyme_C domain-containing protein n=1 Tax=Cyanobacteria bacterium 13_1_40CM_2_61_4 TaxID=1805101 RepID=A0A1Q7ZRX4_9CYAN)

HSP 1 Score: 177 bits (449), Expect = 2.300e-51
Identity = 100/212 (47.17%), Postives = 127/212 (59.91%), Query Frame = 1
Query:   19 LVEPAIARCVSAHLSPGAGLFLSNSMPCRDMDTFAQHSGPGNLCHVAMNRGANGIDGVVSSALGYAVGLRRPVTLLIGDMALLHDVNALHLLRQIPHPITIVCVNNGGSAIFSFLPIARHADVFSPYFDTPHDLSFEGVCSTFGVRYARATTPQEFERIYRESQQPQXXXXXXXXXTTTVQHLFIEAVTDRADNVQVH----RQLGAAATTA 642
            L EP +AR VS  +    GLFL +SMP RDM+TFA   GP     VA NRGA+GIDG V+SA G+A GL   VTLLIGD+ALLHD+N+L L R +  P+TIV +NN G  IFSFLPIA+  D+F  YF TPH+L FEG    FG+ Y R ++   F   YR + + Q             Q   IE VT R +N  +H    R++ A  ++A
Sbjct:   51 LSEPLVARLVSQEIGAERGLFLGSSMPVRDMNTFAAPGGPST--RVAANRGASGIDGTVASATGFAQGLNHRVTLLIGDLALLHDLNSLSLTRSLDAPMTIVVLNNNGGGIFSFLPIAQFEDIFERYFGTPHNLDFEGAGRMFGLEYVRPSSKSAFVEAYRAAAKKQ-------------QSTLIEVVTQRKENYDLHIALQREISAKLSSA 247          
BLAST of jgi.p|Trimin1|177633 vs. uniprot
Match: A0A496Z2F4_9DELT (2-succinyl-5-enolpyruvyl-6-hydroxy-3-cyclohexene-1-carboxylate synthase n=1 Tax=Deltaproteobacteria bacterium TaxID=2026735 RepID=A0A496Z2F4_9DELT)

HSP 1 Score: 184 bits (467), Expect = 1.080e-50
Identity = 95/207 (45.89%), Postives = 128/207 (61.84%), Query Frame = 1
Query:    1 MGGEGRLVEPAIARCVSAHLSPGAGLFLSNSMPCRDMDTFAQHSGPGNLCHVAMNRGANGIDGVVSSALGYAVGLRRPVTLLIGDMALLHDVNALHLLRQIPHPITIVCVNNGGSAIFSFLPIARHADVFSPYFDTPHDLSFEGVCSTFGVRYARATTPQEFERIYRESQQPQXXXXXXXXXTTTVQHLFIEAVTDRADNVQVHRQL 621
            +G +    EPA AR +S ++S   GLFL++SMP RDMD FA   GP     VA NRGA+GIDG ++SA G+A GLRRPVTLLIGD+A LHD+N+L +L+ + HP+ IV +NN G  IFSFLPIA H  +F PYF TPH+L+FE     FG  Y    T   F   Y+ +Q             +  +   IE  +DR++N ++H+ +
Sbjct:  384 IGSDTPFSEPACARLISKYISGDTGLFLASSMPIRDMDMFADVKGP--AVPVACNRGASGIDGTIASAAGFATGLRRPVTLLIGDLAFLHDLNSLAMLKSLSHPLVIVVINNNGGGIFSFLPIAEHKAIFEPYFSTPHNLTFENAARMFGFDYHAPETTDSFVLCYQSAQ-------------SKGRSTIIEVKSDRSENYKIHQAI 575          
BLAST of jgi.p|Trimin1|177633 vs. uniprot
Match: A0A523YYJ1_9BACT (2-succinyl-5-enolpyruvyl-6-hydroxy-3-cyclohexene-1-carboxylic-acid synthase (Fragment) n=1 Tax=candidate division Zixibacteria bacterium TaxID=2053527 RepID=A0A523YYJ1_9BACT)

HSP 1 Score: 180 bits (456), Expect = 1.330e-49
Identity = 95/204 (46.57%), Postives = 130/204 (63.73%), Query Frame = 1
Query:   16 RLVEPAIARCVSAHLSPGAGLFLSNSMPCRDMDTFAQHSGPGNLCHVAMNRGANGIDGVVSSALGYAVGLRRPVTLLIGDMALLHDVNALHLLRQI--PHPITIVCVNNGGSAIFSFLPIARHADVFSPYFDTPHDLSFEGVCSTFGVRYARATTPQEFERIYRESQQPQXXXXXXXXXTTTVQHLFIEAVTDRADNVQVHRQL 621
            RL EPA+AR +S ++ P +GLF+SNSMP RDMD +A   GP  +  VA NRGA+GIDG+++SA G+A GL +PVTLLIGD+A LHDVN+L LL+ +  PHP+ IV +NN G  +FSFLPIA+  + F P+F TPH LSF+     FG+ Y    + + F   Y  +Q+               +   IE  +DRA+N + H+ L
Sbjct:  318 RLSEPAVARLISQNIRPDSGLFVSNSMPIRDMDMYADPHGP--VVTVACNRGASGIDGIIASATGFACGLNKPVTLLIGDLAFLHDVNSLALLKSLAHPHPLVIVVINNDGGGLFSFLPIAKVKEAFEPFFGTPHGLSFDKAADMFGLDYYCPDSKESFVTSYLSAQKEN-------------RSAIIEIKSDRAENYRFHQAL 506          
BLAST of jgi.p|Trimin1|177633 vs. uniprot
Match: UPI000ABB1D1D (2-succinyl-5-enolpyruvyl-6-hydroxy-3- cyclohexene-1-carboxylic-acid synthase n=1 Tax=Rubrobacter aplysinae TaxID=909625 RepID=UPI000ABB1D1D)

HSP 1 Score: 180 bits (456), Expect = 4.570e-49
Identity = 94/203 (46.31%), Postives = 129/203 (63.55%), Query Frame = 1
Query:   13 GRLVEPAIARCVSAHLSPGAGLFLSNSMPCRDMDTFAQHSGPGNLCHVAMNRGANGIDGVVSSALGYAVGLRRPVTLLIGDMALLHDVNALHLLRQIPHPITIVCVNNGGSAIFSFLPIARHADVFSPYFDTPHDLSFEGVCSTFGVRYARATTPQEFERIYRESQQPQXXXXXXXXXTTTVQHLFIEAVTDRADNVQVHRQL 621
            G + EP +AR VS  L+ G GLFL++SMP RDMD +A+  G      VA NRGA+GIDG V+SA G+  GL RP  L+IGD+ALLHD+N+L +LR +PHP+ +V +NN G  IFSFLP++ H D+F PYF TPH L FE   + FG+ Y R    + F   +RE+ + +         ++T+    IE  T+R  N+ +HR L
Sbjct:  394 GEVSEPLVARAVSRLLAEGWGLFLASSMPVRDMDAYARTGGAEP--QVATNRGASGIDGTVASAAGFVRGLGRPAVLVIGDLALLHDLNSLAMLRNLPHPLVVVAINNDGGGIFSFLPVSDHGDIFEPYFGTPHGLGFESAAAMFGLHYERPRNGEAFAAAFREAAERR---------SSTL----IEVKTNRDTNLALHRDL 581          
The following BLAST results are available for this feature:
BLAST of jgi.p|Trimin1|177633 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
A0A835ZAA5_9STRA1.060e-182100.00Thiamine diphosphate-binding protein (Fragment) n=... [more]
D8LMF2_ECTSI1.860e-6649.33Similar to Isochorismate Synthase n=1 Tax=Ectocarp... [more]
A0A4D9D2W1_9STRA4.260e-5946.21MR_MLE domain-containing protein n=6 Tax=Monodopsi... [more]
A0A1V0DD88_9BACT2.430e-5651.902-succinyl-5-enolpyruvyl-6-hydroxy-3-cyclohexene-1... [more]
A0A0G4GZP4_VITBC7.280e-5242.24MR_MLE domain-containing protein n=5 Tax=Vitrella ... [more]
A0A496PRM4_9BACT1.680e-5147.262-succinyl-5-enolpyruvyl-6-hydroxy-3-cyclohexene-1... [more]
A0A1Q7ZRX4_9CYAN2.300e-5147.17TPP_enzyme_C domain-containing protein n=1 Tax=Cya... [more]
A0A496Z2F4_9DELT1.080e-5045.892-succinyl-5-enolpyruvyl-6-hydroxy-3-cyclohexene-1... [more]
A0A523YYJ1_9BACT1.330e-4946.572-succinyl-5-enolpyruvyl-6-hydroxy-3-cyclohexene-1... [more]
UPI000ABB1D1D4.570e-4946.312-succinyl-5-enolpyruvyl-6-hydroxy-3- cyclohexene-... [more]

Pages

back to top
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
Contig_156contigContig_156:226081..227259 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Tribonema minus UTEX_B_31562021-06-17
Properties
Property NameValue
ProteomeIdTrimin1|177633|e_gw1.156.3.1
BRITEko00000,ko00001,ko00002,ko01000
KEGG rclassRC00588,RC01053,RC02148,RC02186,RC02475
KEGG ReactionR01717,R04031,R08165,R08166
KEGG ModuleM00116
KEGG Pathwayko00130,ko01053,ko01100,ko01110,ko01130,map00130,map01053,map01100,map01110,map01130
KEGG koko:K02552,ko:K14759
EC2.2.1.9,4.2.1.113,4.2.99.20,5.4.4.2
Descriptionhydrolase activity, acting on ester bonds
COG categoryC
Max annot lvl2759|Eukaryota
EggNOG OGsCOG0147@1|root,COG0596@1|root,KOG1223@2759|Eukaryota,KOG2382@2759|Eukaryota
Evalue3.04e-67
Seed ortholog2880.D8LMF2
Hectar predicted targeting categoryother localisation
TranscriptId177955
TrackFilteredModels1
ProteinId177633
Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesTypePosition
jgi.p|Trimin1|177633gene_14817Tribonema minus UTEX_B_3156 geneContig_156 226081..227259 +


The following exon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
exon_14817_1exon_14817_1Tribonema minus UTEX_B_3156 exonContig_156 226081..226203 +
exon_14817_2exon_14817_2Tribonema minus UTEX_B_3156 exonContig_156 226563..226567 +
exon_14817_3exon_14817_3Tribonema minus UTEX_B_3156 exonContig_156 226581..227259 +


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
CDS_14817CDS_14817Tribonema minus UTEX_B_3156 CDSContig_156 226081..226203 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
jgi.p|Trimin1|177633Trimin1|177633|e_gw1.156.3.1Tribonema minus UTEX_B_3156 polypeptideContig_156 226081..227259 +


Sequences
The following sequences are available for this feature:

spliced messenger RNA

>mRNA_14817 ID=mRNA_14817|Name=jgi.p|Trimin1|177633|organism=Tribonema minus UTEX_B_3156 |type=mRNA|length=807bp|location=Sequence derived from alignment at Contig_156:226081..227259+ (Tribonema minus UTEX_B_3156 )|Notes=Excludes all bases but those of type(s): exon.  
ATGGGGGGTGAGGGGAGGCTGGTGGAGCCGGCCATCGCGCGCTGCGTGTC
GGCGCATCTTTCGCCCGGCGCAGGGCTGTTCCTGTCCAATAGCATGCCGT
GCCGTGACATGGACACATTCGCGCAGCACAGCGGACCAGGAAATTTGTGC
CACGTGGCCATGAACCGCGGCGCCAACGGCATAGATGGCGTCGTCAGCTC
CGCTTTAGGCTATGCAGTGGGCCTGCGGCGGCCGGTGACTCTCCTCATCG
GCGACATGGCGCTGCTGCACGACGTCAACGCCCTGCACCTGCTGCGCCAG
ATACCACACCCGATCACCATTGTGTGCGTTAACAACGGAGGCAGCGCCAT
CTTCAGCTTCCTGCCGATAGCGCGCCACGCGGACGTGTTCTCGCCGTACT
TCGACACGCCTCACGACCTGTCATTCGAGGGCGTTTGCTCGACGTTTGGC
GTGCGTTACGCGCGTGCGACAACCCCGCAGGAGTTCGAGCGCATCTACCG
CGAGTCTCAGCAGCCGCAGCAGCAGCAAAGTAGCAGCTGCTCAGCCACTA
CCACAGTCCAACATCTCTTCATAGAGGCCGTCACCGACCGCGCCGATAAT
GTGCAAGTGCACCGCCAGCTCGGCGCAGCAGCAACGACCGCTGCTCACCA
CGTCCTGCTGAACGACGTCCACCTGGCCTGGGACCTGCACCTGCCAGGCG
GCACCCTGCACAGCGGCCGCAGCAGCAGCGGCAGCAGCAGCAGCGGCAGA
GGTGCGCGCGGCACCGTGGTGCTGCTGCACGGCTTTATGGGCAGCCGCCA
GGACTGG
back to top

protein sequence of jgi.p|Trimin1|177633

>Trimin1|177633|e_gw1.156.3.1 ID=Trimin1|177633|e_gw1.156.3.1|Name=jgi.p|Trimin1|177633|organism=Tribonema minus UTEX_B_3156 |type=polypeptide|length=269bp
MGGEGRLVEPAIARCVSAHLSPGAGLFLSNSMPCRDMDTFAQHSGPGNLC
HVAMNRGANGIDGVVSSALGYAVGLRRPVTLLIGDMALLHDVNALHLLRQ
IPHPITIVCVNNGGSAIFSFLPIARHADVFSPYFDTPHDLSFEGVCSTFG
VRYARATTPQEFERIYRESQQPQQQQSSSCSATTTVQHLFIEAVTDRADN
VQVHRQLGAAATTAAHHVLLNDVHLAWDLHLPGGTLHSGRSSSGSSSSGR
GARGTVVLLHGFMGSRQDW
back to top

mRNA from alignment at Contig_156:226081..227259+

Legend: exonpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_14817 ID=mRNA_14817|Name=jgi.p|Trimin1|177633|organism=Tribonema minus UTEX_B_3156 |type=mRNA|length=1179bp|location=Sequence derived from alignment at Contig_156:226081..227259+ (Tribonema minus UTEX_B_3156 )
ATGGGGGGTGAGGGGAGGCTGGTGGAGCCGGCCATCGCGCGCTGCGTGTC GGCGCATCTTTCGCCCGGCGCAGGGCTGTTCCTGTCCAATAGCATGCCGT GCCGTGACATGGACACATTCGCGGTGGCGACGCCGGCAGCAGCGGCAGCA GCAGCGGCAGTGGCGGCAGCAGCGGTGACGCCGGCAGCAGCAGCGGCGCC GGCAGCAGCGGCGGCGCCGCTGGCGCGGCAGAATGGCACCAGCACTTGCA ACGGCAGCAGCAGCCATGGGACCGCGTCTTGTGGTACCAGTGGCAGCAAC GGTGTCAATGGCCGCCACTGCAGCAACGACGCTTGTGGCAGCAGCAATGG CACCAAAGGCAGCCACACCAGCAACGGCAGTAGCGGCGACTTGCCCACCG CCAACGGCATCAATGGCGGCGGCTACGGCAGCAGCGGCAGCTTCACCAAC AGCAGCAATGGCAGCAGCGGCAGCAGCAGCAGCAGCAGTGGCGGCAGCAG CAGCGGACCAGGAAATTTGTGCCACGTGGCCATGAACCGCGGCGCCAACG GCATAGATGGCGTCGTCAGCTCCGCTTTAGGCTATGCAGTGGGCCTGCGG CGGCCGGTGACTCTCCTCATCGGCGACATGGCGCTGCTGCACGACGTCAA CGCCCTGCACCTGCTGCGCCAGATACCACACCCGATCACCATTGTGTGCG TTAACAACGGAGGCAGCGCCATCTTCAGCTTCCTGCCGATAGCGCGCCAC GCGGACGTGTTCTCGCCGTACTTCGACACGCCTCACGACCTGTCATTCGA GGGCGTTTGCTCGACGTTTGGCGTGCGTTACGCGCGTGCGACAACCCCGC AGGAGTTCGAGCGCATCTACCGCGAGTCTCAGCAGCCGCAGCAGCAGCAA AGTAGCAGCTGCTCAGCCACTACCACAGTCCAACATCTCTTCATAGAGGC CGTCACCGACCGCGCCGATAATGTGCAAGTGCACCGCCAGCTCGGCGCAG CAGCAACGACCGCTGCTCACCACGTCCTGCTGAACGACGTCCACCTGGCC TGGGACCTGCACCTGCCAGGCGGCACCCTGCACAGCGGCCGCAGCAGCAG CGGCAGCAGCAGCAGCGGCAGAGGTGCGCGCGGCACCGTGGTGCTGCTGC ACGGCTTTATGGGCAGCCGCCAGGACTGG
back to top

Coding sequence (CDS) from alignment at Contig_156:226081..227259+

>mRNA_14817 ID=mRNA_14817|Name=jgi.p|Trimin1|177633|organism=Tribonema minus UTEX_B_3156 |type=CDS|length=807bp|location=Sequence derived from alignment at Contig_156:226081..227259+ (Tribonema minus UTEX_B_3156 )
ATGGGGGGTGAGGGGAGGCTGGTGGAGCCGGCCATCGCGCGCTGCGTGTC
GGCGCATCTTTCGCCCGGCGCAGGGCTGTTCCTGTCCAATAGCATGCCGT
GCCGTGACATGGACACATTCGCGCAGCACAGCGGACCAGGAAATTTGTGC
CACGTGGCCATGAACCGCGGCGCCAACGGCATAGATGGCGTCGTCAGCTC
CGCTTTAGGCTATGCAGTGGGCCTGCGGCGGCCGGTGACTCTCCTCATCG
GCGACATGGCGCTGCTGCACGACGTCAACGCCCTGCACCTGCTGCGCCAG
ATACCACACCCGATCACCATTGTGTGCGTTAACAACGGAGGCAGCGCCAT
CTTCAGCTTCCTGCCGATAGCGCGCCACGCGGACGTGTTCTCGCCGTACT
TCGACACGCCTCACGACCTGTCATTCGAGGGCGTTTGCTCGACGTTTGGC
GTGCGTTACGCGCGTGCGACAACCCCGCAGGAGTTCGAGCGCATCTACCG
CGAGTCTCAGCAGCCGCAGCAGCAGCAAAGTAGCAGCTGCTCAGCCACTA
CCACAGTCCAACATCTCTTCATAGAGGCCGTCACCGACCGCGCCGATAAT
GTGCAAGTGCACCGCCAGCTCGGCGCAGCAGCAACGACCGCTGCTCACCA
CGTCCTGCTGAACGACGTCCACCTGGCCTGGGACCTGCACCTGCCAGGCG
GCACCCTGCACAGCGGCCGCAGCAGCAGCGGCAGCAGCAGCAGCGGCAGA
GGTGCGCGCGGCACCGTGGTGCTGCTGCACGGCTTTATGGGCAGCCGCCA
GGACTGG
back to top