mRNA_1479 (mRNA) Tribonema minus UTEX_B_3156

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
Namejgi.p|Trimin1|150803
Unique NamemRNA_1479
TypemRNA
OrganismTribonema minus UTEX_B_3156 (Tribonema minus UTEX_B_3156 )
Homology
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BLAST of jgi.p|Trimin1|150803 vs. uniprot
Match: A0A835Z5N9_9STRA (Ankyrin repeat-containing domain protein (Fragment) n=2 Tax=Tribonema minus TaxID=303371 RepID=A0A835Z5N9_9STRA)

HSP 1 Score: 73.9 bits (180), Expect = 6.210e-14
Identity = 37/37 (100.00%), Postives = 37/37 (100.00%), Query Frame = 1 
Query:    1 DGTTALHHATARGDAEAVSILLAAGANPRLRTQFGQT 111
            DGTTALHHATARGDAEAVSILLAAGANPRLRTQFGQT
Sbjct:    1 DGTTALHHATARGDAEAVSILLAAGANPRLRTQFGQT 37
The following BLAST results are available for this feature:
BLAST of jgi.p|Trimin1|150803 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 1
Match NameE-valueIdentityDescription
A0A835Z5N9_9STRA6.210e-14100.00Ankyrin repeat-containing domain protein (Fragment... [more]
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
Contig_18contigContig_18:1158714..1159154 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Tribonema minus UTEX_B_31562021-06-17
Properties
Property NameValue
ProteomeIdTrimin1|150803|gw1.18.279.1
Hectar predicted targeting categoryother localisation
TranscriptId151125
TrackFilteredModels1
ProteinId150803
Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesTypePosition
jgi.p|Trimin1|150803gene_1479Tribonema minus UTEX_B_3156 geneContig_18 1158714..1159154 -


The following exon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
exon_1479_1exon_1479_1Tribonema minus UTEX_B_3156 exonContig_18 1158714..1159154 -


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
CDS_1479CDS_1479Tribonema minus UTEX_B_3156 CDSContig_18 1158714..1159154 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
jgi.p|Trimin1|150803Trimin1|150803|gw1.18.279.1Tribonema minus UTEX_B_3156 polypeptideContig_18 1158714..1159154 -


Sequences
The following sequences are available for this feature:

spliced messenger RNA

>mRNA_1479 ID=mRNA_1479|Name=jgi.p|Trimin1|150803|organism=Tribonema minus UTEX_B_3156 |type=mRNA|length=441bp|location=Sequence derived from alignment at Contig_18:1158714..1159154- (Tribonema minus UTEX_B_3156 )|Notes=Excludes all bases but those of type(s): exon.  
GACGGCACTACTGCTTTACACCACGCCACAGCTCGTGGTGATGCTGAGGC
CGTAAGCATACTGCTGGCAGCTGGAGCCAATCCCCGCTTACGGACACAAT
TTGGGCAGACCCCTCTCCACTTTGCAAGTTTAGCAAAGAACACGATCATC
GCCAACAAACTCATCCTTGCAGGCGGCCATGTTGATGCTACAGACAATGC
GTCGGAAAGCGCACTGCATTTCTCGACAAGGCTCAATGACGTGGCTATGG
TGTACACGCTGATGTGTCATTCAGCGTCAGCCGATCTGGCAAACCTGTTG
GGTCAGACGCCGCTGCACATTGCAGCCCGTGCGTCTCCCCCTGCCATCAC
CACGTTATTGATCCAAGCATCTCAAAACCTCAGCACAACAGATTTTCAGG
GAGAGAATCCGCTGCATGTGTCTGTGAAGCACCAGAATGTC
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protein sequence of jgi.p|Trimin1|150803

>Trimin1|150803|gw1.18.279.1 ID=Trimin1|150803|gw1.18.279.1|Name=jgi.p|Trimin1|150803|organism=Tribonema minus UTEX_B_3156 |type=polypeptide|length=147bp
DGTTALHHATARGDAEAVSILLAAGANPRLRTQFGQTPLHFASLAKNTII
ANKLILAGGHVDATDNASESALHFSTRLNDVAMVYTLMCHSASADLANLL
GQTPLHIAARASPPAITTLLIQASQNLSTTDFQGENPLHVSVKHQNV
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mRNA from alignment at Contig_18:1158714..1159154-

Legend: exonpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_1479 ID=mRNA_1479|Name=jgi.p|Trimin1|150803|organism=Tribonema minus UTEX_B_3156 |type=mRNA|length=441bp|location=Sequence derived from alignment at Contig_18:1158714..1159154- (Tribonema minus UTEX_B_3156 )
GACGGCACTACTGCTTTACACCACGCCACAGCTCGTGGTGATGCTGAGGC
CGTAAGCATACTGCTGGCAGCTGGAGCCAATCCCCGCTTACGGACACAAT
TTGGGCAGACCCCTCTCCACTTTGCAAGTTTAGCAAAGAACACGATCATC
GCCAACAAACTCATCCTTGCAGGCGGCCATGTTGATGCTACAGACAATGC
GTCGGAAAGCGCACTGCATTTCTCGACAAGGCTCAATGACGTGGCTATGG
TGTACACGCTGATGTGTCATTCAGCGTCAGCCGATCTGGCAAACCTGTTG
GGTCAGACGCCGCTGCACATTGCAGCCCGTGCGTCTCCCCCTGCCATCAC
CACGTTATTGATCCAAGCATCTCAAAACCTCAGCACAACAGATTTTCAGG
GAGAGAATCCGCTGCATGTGTCTGTGAAGCACCAGAATGTC
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Coding sequence (CDS) from alignment at Contig_18:1158714..1159154-

>mRNA_1479 ID=mRNA_1479|Name=jgi.p|Trimin1|150803|organism=Tribonema minus UTEX_B_3156 |type=CDS|length=441bp|location=Sequence derived from alignment at Contig_18:1158714..1159154- (Tribonema minus UTEX_B_3156 )
GACGGCACTACTGCTTTACACCACGCCACAGCTCGTGGTGATGCTGAGGC
CGTAAGCATACTGCTGGCAGCTGGAGCCAATCCCCGCTTACGGACACAAT
TTGGGCAGACCCCTCTCCACTTTGCAAGTTTAGCAAAGAACACGATCATC
GCCAACAAACTCATCCTTGCAGGCGGCCATGTTGATGCTACAGACAATGC
GTCGGAAAGCGCACTGCATTTCTCGACAAGGCTCAATGACGTGGCTATGG
TGTACACGCTGATGTGTCATTCAGCGTCAGCCGATCTGGCAAACCTGTTG
GGTCAGACGCCGCTGCACATTGCAGCCCGTGCGTCTCCCCCTGCCATCAC
CACGTTATTGATCCAAGCATCTCAAAACCTCAGCACAACAGATTTTCAGG
GAGAGAATCCGCTGCATGTGTCTGTGAAGCACCAGAATGTC
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