mRNA_14767 (mRNA) Tribonema minus UTEX_B_3156

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
Namejgi.p|Trimin1|351326
Unique NamemRNA_14767
TypemRNA
OrganismTribonema minus UTEX_B_3156 (Tribonema minus UTEX_B_3156 )
Homology
BLAST of jgi.p|Trimin1|351326 vs. uniprot
Match: A0A835YLQ0_9STRA (Glycoside hydrolase superfamily n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A835YLQ0_9STRA)

HSP 1 Score: 594 bits (1532), Expect = 1.950e-214
Identity = 280/280 (100.00%), Postives = 280/280 (100.00%), Query Frame = 1
Query:    1 MSNPPRVGVTTDTVDINDLEDEVNAKLQNVNIYQDVRKLADAWEWIPPLDDHKGVSMVMEFQDAKLQDILDGKFDSDMKNVAKVAKEDGRRVWMRPLHEFNSDWYSWGTYRDGFEKVNTRDQFKKAFRKIVTLFRQEGATNLRWQLSYNNNSPKDDPRPFSEWWPGRDVVDMVTCSAYNRAGIDSYHKDFKSFDEVYGPAYDRMKKLDKTVKLGVGETSTSGVGGSRSDWFYGAFKSIADGHYPRMRLINFFLENKDMDWRLNTQSEKDAFGRGLRLLRP 840
            MSNPPRVGVTTDTVDINDLEDEVNAKLQNVNIYQDVRKLADAWEWIPPLDDHKGVSMVMEFQDAKLQDILDGKFDSDMKNVAKVAKEDGRRVWMRPLHEFNSDWYSWGTYRDGFEKVNTRDQFKKAFRKIVTLFRQEGATNLRWQLSYNNNSPKDDPRPFSEWWPGRDVVDMVTCSAYNRAGIDSYHKDFKSFDEVYGPAYDRMKKLDKTVKLGVGETSTSGVGGSRSDWFYGAFKSIADGHYPRMRLINFFLENKDMDWRLNTQSEKDAFGRGLRLLRP
Sbjct:    1 MSNPPRVGVTTDTVDINDLEDEVNAKLQNVNIYQDVRKLADAWEWIPPLDDHKGVSMVMEFQDAKLQDILDGKFDSDMKNVAKVAKEDGRRVWMRPLHEFNSDWYSWGTYRDGFEKVNTRDQFKKAFRKIVTLFRQEGATNLRWQLSYNNNSPKDDPRPFSEWWPGRDVVDMVTCSAYNRAGIDSYHKDFKSFDEVYGPAYDRMKKLDKTVKLGVGETSTSGVGGSRSDWFYGAFKSIADGHYPRMRLINFFLENKDMDWRLNTQSEKDAFGRGLRLLRP 280          
BLAST of jgi.p|Trimin1|351326 vs. uniprot
Match: A0A835YVC0_9STRA (Glycoside hydrolase superfamily (Fragment) n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A835YVC0_9STRA)

HSP 1 Score: 213 bits (541), Expect = 3.060e-64
Identity = 117/255 (45.88%), Postives = 157/255 (61.57%), Query Frame = 1
Query:   73 AKLQNVNIYQDVRKLADAWEWI--PPLDDHKGVSMVMEFQD---AKLQDILDGKFDSDMKNVAKVAKEDG-RRVWMRPLHEFNSDWYSWGTYRDGFEKVNTRDQFKKAFRKIVTLFRQEGATNLRWQLSYNNNSPKDDPRPFSEWWPGRDVVDMVTCSAYNRAGIDSYHKDFKSFDEVYGPAYDRMKKLDKTVKLGVGETS-TSGVGGSRSDWFYGAFKSIADGHYPRMRLINFFLENKDMDWRLNTQSEKDAFG 816
            AK Q V  YQ V  L   ++++  P LD  K V +V EF D   A LQ I DGKFD  +       K DG R+VW+RP+HEFN DWYSWGTYR+G    N++  FK+AF+ +  +F+  GA N ++QL YN  +P++D   FS WWPG DVVDM+ CS YNRAG+DS H+ ++SF +VY   Y +M  LD    LGV ETS T+    S+  W   AF ++ +  + R+   N+FL NKD +W LN+  E+ AFG
Sbjct:    2 AKFQTVVKYQSVTGLPGQYKYLVKPYLDAGKSVVLVTEFIDGSYANLQAIGDGKFDWALNKFIDDWKADGNRQVWIRPMHEFNGDWYSWGTYRNG----NSQALFKRAFQHVAYVFKNRGA-NAKFQLGYNCVNPRNDGTSFSNWWPGGDVVDMILCSGYNRAGLDSNHQSWQSFSDVYSSGYYKMAALDGGKPLGVAETSSTTWQSYSKPQWIKDAFNALVN-KFTRVEQCNWFLINKDGNWGLNSDDERHAFG 250          
BLAST of jgi.p|Trimin1|351326 vs. uniprot
Match: A0A835YT60_9STRA (Glycoside hydrolase superfamily (Fragment) n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A835YT60_9STRA)

HSP 1 Score: 206 bits (524), Expect = 1.840e-61
Identity = 98/213 (46.01%), Postives = 137/213 (64.32%), Query Frame = 1
Query:  190 AKLQDILDGKFDSDMKN-VAKVAKEDGRRVWMRPLHEFNSDWYSWGTYRDGFEKVNTRDQFKKAFRKIVTLFRQEGATNLRWQLSYNNNSPKDDPRPFSEWWPGRDVVDMVTCSAYNRAGIDSYHKDFKSFDEVYGPAYDRMKKLDKTVKLGVGETSTSGVGGSRSDWFYGAFKSIADGHYPRMRLINFFLENKDMDWRLNTQSEKDAFGRGL 825
            + LQ I+DG FD  +   +  +     +++W+R LHEFN DWY WGTYRDG    N  D FK+AFR +V +FR  GA N+++QL+YN ++P DD + F +W+PG DVVDM+ CS YNRAG+DS H  ++SF EV+   Y +M  LD    LGV ETS++  GG ++ W   AF ++ +  + R+   N+FL NK  DW LN+ SE+ AFG  L
Sbjct:   64 SNLQQIIDGAFDGQLNGFIDDMMSHGNQQMWIRHLHEFNGDWYPWGTYRDG----NDTDTFKRAFRHVVDVFRGRGA-NVKFQLAYNCDNPNDDGKSFHDWYPGGDVVDMILCSGYNRAGVDSDHTSWQSFSEVFSSGYYKMASLDGGKPLGVAETSSTSWGGDKAQWIRDAFDAVVN-QFTRVEQCNWFLINKAGDWDLNSDSERHAFGDSL 270          
BLAST of jgi.p|Trimin1|351326 vs. uniprot
Match: A0A835YW31_9STRA (Glycoside hydrolase superfamily (Fragment) n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A835YW31_9STRA)

HSP 1 Score: 201 bits (510), Expect = 7.530e-60
Identity = 101/241 (41.91%), Postives = 154/241 (63.90%), Query Frame = 1
Query:  121 DAWEWIPP-LDDHKGVSMVMEFQD---AKLQDILDGKFDSDMKNVAKVAKEDG-RRVWMRPLHEFNSDWYSWGTYRDGFEKVNTRDQFKKAFRKIVTLFRQEGATNLRWQLSYNNNSPKDDPRPFSEWWPGRDVVDMVTCSAYNRAGIDSYHKDFKSFDEVYGPAYDRMKKLDKTVKLGVGETSTSGVGGSRSDWFYGAFKSIADGHYPRMRLINFFLENKDMDWRLNTQSEKDAFGRGLR 828
            D W  + P LD    V +V++F       LQ+I DG++D+ +       K+DG RR+ +RP+HEFN DWY WGT+R G    N++D FK+AF+ +  +F++ GA N++ QL+YN +S ++D  PF++W+PG DVVD++ CSAYNR+G++ +   ++SFDEV+G  YDRM  +     LG+GET ++  GG +  W   AF  +    Y R++  ++ LENK+ DW LNT  +  AFG G+R
Sbjct:    1 DYWNTVKPALDKVDDVVLVVQFDTYDYTNLQEIGDGRYDASLNQFIDAWKDDGNRRLSIRPMHEFNGDWYPWGTFRGG---GNSKDNFKRAFQHVAGVFKRRGA-NVKMQLAYNCDSAQNDGSPFADWYPGDDVVDIILCSAYNRSGLEGH--GWESFDEVFGGGYDRMASIPGNKPLGLGETGSTDWGGDKPAWISDAFNQLVY-KYTRVQECHWLLENKEGDWDLNTDGDVWAFGDGMR 234          
BLAST of jgi.p|Trimin1|351326 vs. uniprot
Match: A0A835YS57_9STRA (Glycoside hydrolase superfamily n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A835YS57_9STRA)

HSP 1 Score: 205 bits (522), Expect = 1.960e-59
Identity = 111/274 (40.51%), Postives = 166/274 (60.58%), Query Frame = 1
Query:   19 VGVTTDT-VDINDLEDEVNAKLQNVNIYQDVRKLADAWEWI--PPLDDHKGVSMVMEFQDAK---LQDILDGKFDSDMKNVAKVAKEDGRR-VWMRPLHEFNSDWYSWGTYRDGFEKVNTRDQFKKAFRKIVTLFRQEGATNLRWQLSYNNNSPKDDPRPFSEWWPGRDVVDMVTCSAYNRAGIDSYHKDFKSFDEVYGPAYDRMKKLDKTVKLGVGE-TSTSGVGGSRSDWFYGAFKSIADGHYPRMRLINFFLENKDMDWRLNTQSEKDAFG 816
            +G+  D+ +   D E  + AK Q V  YQ V  L   ++++  P L+  + V ++ EF D     LQ I DG FDS +       + DG R VW+RP+HEFN DWY  GTYR G    N+ D+FK+A+R +V++FR  GA N ++QL+YN ++ ++D + F  WWPG+  VDMV CS YNRAG+D+ H+ ++SF +VY   Y++M  L     LG+ E +ST+    S+  W   AF ++    + R+R +N+FL NK+ DW LN+ +E+ AFG
Sbjct:   56 IGIADDSSISPTDREKLIGAKFQTVQKYQKVSDLPGKYQYLVEPHLNAGRTVVLMTEFDDGSYVDLQAIGDGAFDSYLNKFIDEWQADGNRTVWIRPMHEFNGDWYPCGTYRTG----NSSDKFKRAYRHVVSVFRNRGA-NAKFQLAYNCDNARNDSKSFGVWWPGKYAVDMVVCSGYNRAGLDADHQKWQSFSDVYSSGYNKMAALPGLKPLGIAEMSSTTWQSYSKPQWIRDAFDAVVT-KFTRVRQLNWFLINKEGDWGLNSDAERQAFG 323          
BLAST of jgi.p|Trimin1|351326 vs. uniprot
Match: A0A835Z3A8_9STRA (Glycoside hydrolase superfamily n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A835Z3A8_9STRA)

HSP 1 Score: 193 bits (491), Expect = 3.400e-55
Identity = 108/288 (37.50%), Postives = 167/288 (57.99%), Query Frame = 1
Query:   19 VGVTTDTVDINDLEDEVNAKLQNVNIYQDVRKLADAWEWIPPLDDHKG--VSMVMEFQDAK-----LQDILDGKFDSDMKNVAKVAKEDGR----RVWMRPLHEFNSDWYSWGTYRDGFEKVNTRDQFKKAFRKIVTLFRQEGA-TNLRWQLSYNNNSPKDDPRPFSEWWPGRDVVDMVTCSAYNRAG-IDSYHKDFKSFDEVYGPAYDRMKKLDKTVKLGVGETSTSGVGGS--RSDWFYGAFKSIADGH-YPRMRLINFFLENKDMDWRLNTQSEKDAFGRGLRLL 834
            +GV+  ++ I+D E +V A +     +Q    +   W+         G  + +V+EF +       L  +L G +D   K + K+ +  GR    RVW+R LHEFNSDWY WGT+++G    N+  +FK+A+R IV   R+ GA  N+++QLSYN  S   D   FS+WWPG   VDM+  +AYNRAG ++   K F+ F E +  +Y R+  L  T  +G+ E  ++   G+  ++DW+Y  FK++ + H +PR+  +NFFLE+K  DWRL+T+ E+  FG G+RLL
Sbjct:   95 IGVSMGSMAIDDREKQVGAHIPIAMTFQPCMNVLKTWDDEIVRRQKLGHEIVLVLEFNETSKKVKALDLVLSGFYD---KKLRKIGRRFGRMKKHRVWVRILHEFNSDWYPWGTFKEG----NSIPKFKQAYRYIVKRLRKHGAGDNIKFQLSYNARSSGGDKIDFSKWWPGDAYVDMIMITAYNRAGTLEGTEKPFQQFAEFFPESYKRVAALHPTKPIGISEAGSTDAKGAQAKADWYYNMFKTLKESHAFPRLAQVNFFLEDKIYDWRLDTREEQTRFGDGMRLL 375          
BLAST of jgi.p|Trimin1|351326 vs. uniprot
Match: A0A836CGL5_9STRA (Glycoside hydrolase superfamily n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A836CGL5_9STRA)

HSP 1 Score: 191 bits (486), Expect = 1.780e-54
Identity = 112/267 (41.95%), Postives = 150/267 (56.18%), Query Frame = 1
Query:   64 EVNAKLQNVNIYQDVRKLADAWEWIPPLDDHKGVSMVMEFQDA----KLQDILDGKFDSDMKNVAKVAKEDGRR-VWMRPLHEFNSDWYSWGTYRDGFEKVNTRDQFKKAFRKIVTLFRQEGATNLRWQLSYNN-NSPKDDPRPFSEWWPGRDVVDMVTCSAYNRAGIDSYHKDFKSFDEVYGPAYDRMKKLDKTVKLGVGETSTSGV-GGSRSDWFYGAFKSIADGHYPRMRLINFFLENK-DMDWRLNTQSEKDAFGRGLRLLRP 840
            E+ AK Q V  +Q V+K+   +   P LD      MVMEF DA     L+ I +G +D  +        +DG R VW+RPLHEFN DWY WGTYR G    NT+  FK+A+R +  +   +GA N+++QL+YN  N   D   PF +WWPG   VDMV CS YNRAG D+ H+ + +F EV+G AY++M  L     LGVGETS +      ++ W   AF    +  YPR+  + +FL+NK D  W LN+  E  AFG  L    P
Sbjct:   86 ELGAKFQAVVKFQSVQKMRYPFLVKPHLDAGFQSVMVMEFLDATRHTNLKQIANGLYDKYLYKFVDELMDDGNREVWVRPLHEFNGDWYPWGTYRGG---DNTKRMFKRAWRHVHWILTNKGA-NIKFQLAYNCVNGQNDQTTPFLDWWPGEQYVDMVVCSGYNRAGSDADHQQWLTFPEVFGAAYEQMLTLPGMKPLGVGETSCNNFEDNDKAQWIRDAFYDFVNT-YPRIEHVTWFLQNKNDGRWDLNSPEEIAAFGESLIEYTP 347          
BLAST of jgi.p|Trimin1|351326 vs. uniprot
Match: A0A835YXK1_9STRA (Glycoside hydrolase superfamily n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A835YXK1_9STRA)

HSP 1 Score: 185 bits (470), Expect = 9.900e-54
Identity = 98/215 (45.58%), Postives = 136/215 (63.26%), Query Frame = 1
Query:  196 LQDILDGKFDSDMKNVAKVAKEDG-RRVWMRPLHEFNSDWYSWGTYRDGFEKVNTRDQFKKAFRKIVTLFRQEGATNLRWQLSYNNNSPKDDPRPFSEWWPGRDVVDMVTCSAYNRAGIDSYHKDFKSFDEVYGPAYDRMKKLDKTVKLGVGETSTSGVGG-SRSDWFYGAFKSIADGHYPRMRLINFFLENKDM--DWRLNTQSEKDAFGRGLR 828
            LQ + +G++D  +       K DG RR+ +RP+HEFN DWY WGTYR G    N++  FK+A+  +  LFR+ GA N   QLSYN  +P DD   F EW+PG + VDMV CSAYNRAGIDS H+ +++F++V+G  Y +M  L    +LGV E  T+  GG S++ W   AFK++ +  Y R+    + L+NKD   DW LNT+SE  AFG+ +R
Sbjct:   16 LQAVGEGRYDKQLNAFIDEWKADGNRRLGIRPMHEFNGDWYEWGTYRGG---SNSKAAFKRAYTHVSRLFRKRGA-NAVMQLSYNCVNPNDDQTSFKEWYPGAEHVDMVLCSAYNRAGIDSDHQKWETFEQVFGWGYKQMAALPGRKRLGVAEMGTTSWGGHSKAQWIRDAFKALVN-QYTRVEEGFWLLQNKDGSGDWNLNTRSEVAAFGQSMR 225          
BLAST of jgi.p|Trimin1|351326 vs. uniprot
Match: A0A835YWE9_9STRA (Glycoside hydrolase superfamily n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A835YWE9_9STRA)

HSP 1 Score: 185 bits (470), Expect = 1.810e-52
Identity = 106/268 (39.55%), Postives = 152/268 (56.72%), Query Frame = 1
Query:   58 EDEVNAKLQNVNIYQDVRKLADAWEWIPPLDDHKGVSMVMEFQDA---KLQDILDGKFDSDMKNVA-KVAKEDGRRVWMRPLHEFNSDWYSWGTYRDGFEKVNTRDQFKKAFRKIVTLFRQEGATNLRWQLSYNN-NSPKDDPRPFSEWWPGRDVVDMVTCSAYNRAGIDSYHKDFKSFDEVYGPAYDRMKKLDKTVKLGVGETSTSGVGGS-RSDWFYGAFKSIADGHYPRMRLINFFLENKDM-DWRLNTQSEKDAFGRGLRLLRP 840
            E+E+NA+ Q V  +  ++ +   +     LD    V +V++F D     L+ I DG +D  +   A ++ K+  R VW+RP+HEFN DWY WGTY  G    NT   F +A+R +  +   +GA N+++QL YN  N   D   PFS WWPG DVVDMV CSAYNRAG D +H  ++++ +V+   YD+M  L  +  LGVGE  T G+ G  ++ W   AF +     YPR+  I +FLE+KD  +W LN+  E +AF   L    P
Sbjct:   42 EEELNAQFQVVTKFGFIKTMRYPFLVKNYLDQGFKVVLVVQFLDTLTTNLKQIGDGLYDKYLYKFADELIKDGNREVWVRPMHEFNGDWYPWGTYMGG---TNTIQNFIRAYRHVYQVLTAKGA-NIKFQLGYNCVNGANDKKTPFSAWWPGDDVVDMVVCSAYNRAGTDQFHTQWQTWPDVFQLGYDQMAALPTSAPLGVGEMGTVGMAGEDKAGWIRDAFAAFPT-LYPRVEQITWFLEDKDDGEWDLNSADEIEAFRDSLLQYTP 304          
BLAST of jgi.p|Trimin1|351326 vs. uniprot
Match: A0A835YZR6_9STRA (GH26 domain-containing protein n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A835YZR6_9STRA)

HSP 1 Score: 193 bits (490), Expect = 2.740e-52
Identity = 119/310 (38.39%), Postives = 168/310 (54.19%), Query Frame = 1
Query:   16 RVGVTTD-TVDINDLEDEVNAKLQNVNIYQDVRKLADAWEWI--PPLDDHKGVSMVMEFQD---AKLQDILDGKFDSDMKNVAKVAKEDGRR-VWMRPLHEFNSDWYSWGTYRDGFEKVNTRDQFKKAFRKIVTLFRQEGATNLRWQLSYNNNSPKDDPRPFSEWWPGRDVVDMVTCSAYNRAGIDSYHKDFKSFDEVYGPAYDRMKKLDKTVKLGVGETS-TSGVGGSRSDWFYGAFKSIADGHYPRMRLI----------------------------------NFFLENK-DMDWRLNTQSEKDAFG 816
            R+G+  D ++     E  + AK Q V  YQ V++L   ++++  P LD ++ V +V EF D   A LQ I DG FDS +       K DG R +W+RP+HEFN DWYSWGTYR G    N R +F++AF+ +  +F+  GA   + QLSYN ++ + + R F+EW+PG DVVDMV CS YNRAG DSYH  +KSF +V+ P Y+RM  L     LGV ETS T+    S+  W   AF ++ +  + R+                                     N+FL NK  ++W LN+ +E+ AFG
Sbjct:  273 RIGIIDDASITPTSRESLIGAKFQVVVKYQKVKELPGKYKYLLKPHLDANRTVVLVPEFYDGSYANLQAIGDGAFDSYLNKFIDEWKADGNRAMWIRPMHEFNGDWYSWGTYRSG----NDRAKFQRAFKHVAYVFKNRGA-QAKMQLSYNCDNARGENRNFTEWFPGTDVVDMVLCSGYNRAGTDSYHMSWKSFTDVFTPGYNRMAALSGNKPLGVAETSSTTWQSNSKPQWIKDAFYAVVN-KFTRIXXXXXXXXXXXXXXEQFDCIYINKGDTFNCGLDTSQHNWFLINKGSLNWGLNSDAERKAFG 576          
BLAST of jgi.p|Trimin1|351326 vs. uniprot
Match: A0A836C8S6_9STRA (Uncharacterized protein n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A836C8S6_9STRA)

HSP 1 Score: 261 bits (667), Expect = 2.130e-86
Identity = 190/190 (100.00%), Postives = 190/190 (100.00%), Query Frame = 1
Query:    1 MAHRERQIYVFTEILSPLRKKGSDAPAGIIYVFPAIMFLSXXXXKARDGVVKLAGKRRFKAIVXXXXXXXXXXXXXXXXXXXXXVGIGIIMGLLGAIISVLESFFPHILGAAAARHETRGAAHSSAPLYCVARCQAALDCRAHAAAFADIGLGGXXXXXXGGLGXXXXXXXXXXXXXXSSDVERRWVRQM 570
            MAHRERQIYVFTEILSPLRKKGSDAPAGIIYVFPAIMFLSXXXXKARDGVVKLAGKRRFKAIVXXXXXXXXXXXXXXXXXXXXXVGIGIIMGLLGAIISVLESFFPHILGAAAARHETRGAAHSSAPLYCVARCQAALDCRAHAAAFADIGLGGXXXXXXGGLGXXXXXXXXXXXXXXSSDVERRWVRQM
Sbjct:    1 MAHRERQIYVFTEILSPLRKKGSDAPAGIIYVFPAIMFLSXXXXKARDGVVKLAGKRRFKAIVXXXXXXXXXXXXXXXXXXXXXVGIGIIMGLLGAIISVLESFFPHILGAAAARHETRGAAHSSAPLYCVARCQAALDCRAHAAAFADIGLGGXXXXXXGGLGXXXXXXXXXXXXXXSSDVERRWVRQM 190          
The following BLAST results are available for this feature:
BLAST of jgi.p|Trimin1|351326 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
A0A835YLQ0_9STRA1.950e-214100.00Glycoside hydrolase superfamily n=1 Tax=Tribonema ... [more]
A0A835YVC0_9STRA3.060e-6445.88Glycoside hydrolase superfamily (Fragment) n=1 Tax... [more]
A0A835YT60_9STRA1.840e-6146.01Glycoside hydrolase superfamily (Fragment) n=1 Tax... [more]
A0A835YW31_9STRA7.530e-6041.91Glycoside hydrolase superfamily (Fragment) n=1 Tax... [more]
A0A835YS57_9STRA1.960e-5940.51Glycoside hydrolase superfamily n=1 Tax=Tribonema ... [more]
A0A835Z3A8_9STRA3.400e-5537.50Glycoside hydrolase superfamily n=1 Tax=Tribonema ... [more]
A0A836CGL5_9STRA1.780e-5441.95Glycoside hydrolase superfamily n=1 Tax=Tribonema ... [more]
A0A835YXK1_9STRA9.900e-5445.58Glycoside hydrolase superfamily n=1 Tax=Tribonema ... [more]
A0A835YWE9_9STRA1.810e-5239.55Glycoside hydrolase superfamily n=1 Tax=Tribonema ... [more]
A0A835YZR6_9STRA2.740e-5238.39GH26 domain-containing protein n=1 Tax=Tribonema m... [more]

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BLAST of jgi.p|Trimin1|351326 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 1
Match NameE-valueIdentityDescription
A0A836C8S6_9STRA2.130e-86100.00Uncharacterized protein n=1 Tax=Tribonema minus Ta... [more]
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
Contig_87contigContig_87:321321..324462 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Tribonema minus UTEX_B_31562021-06-17
Properties
Property NameValue
ProteomeIdTrimin1|351326|estExt_Genemark1.C_Ctg_870038
DescriptionBelongs to the glycosyl hydrolase 26 family
COG categoryG
Max annot lvl2|Bacteria
EggNOG OGsCOG4124@1|root,COG4124@2|Bacteria
Evalue2.65e-34
Seed ortholog1123400.KB904752_gene841
Hectar predicted targeting categoryother localisation
TranscriptId351648
TrackFilteredModels1
ProteinId351326
Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesTypePosition
jgi.p|Trimin1|351326gene_14767Tribonema minus UTEX_B_3156 geneContig_87 321321..324462 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
jgi.p|Trimin1|351326Trimin1|351326|estExt_Genemark1.C_Ctg_870038Tribonema minus UTEX_B_3156 polypeptideContig_87 321461..324462 -


The following exon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
exon_14767_5exon_14767_5Tribonema minus UTEX_B_3156 exonContig_87 321321..321535 -
exon_14767_4exon_14767_4Tribonema minus UTEX_B_3156 exonContig_87 322412..322640 -
exon_14767_3exon_14767_3Tribonema minus UTEX_B_3156 exonContig_87 323133..323360 -
exon_14767_2exon_14767_2Tribonema minus UTEX_B_3156 exonContig_87 323702..323874 -
exon_14767_1exon_14767_1Tribonema minus UTEX_B_3156 exonContig_87 324325..324462 -


The following three_prime_UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
UTR3_14767UTR3_14767Tribonema minus UTEX_B_3156 three_prime_UTRContig_87 321321..321460 -


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
CDS_14767CDS_14767Tribonema minus UTEX_B_3156 CDSContig_87 324325..324462 -


Sequences
The following sequences are available for this feature:

spliced messenger RNA

>mRNA_14767 ID=mRNA_14767|Name=jgi.p|Trimin1|351326|organism=Tribonema minus UTEX_B_3156 |type=mRNA|length=983bp|location=Sequence derived from alignment at Contig_87:321321..324462- (Tribonema minus UTEX_B_3156 )|Notes=Excludes all bases but those of type(s): exon.  
ATGTCCAACCCGCCGCGCGTGGGGGTGACAACGGACACTGTGGACATAAA
CGATTTGGAGGATGAGGTCAATGCCAAATTACAGAACGTCAACATCTACC
AGGACGTCAGGAAGCTGGCGGACGCATGGGAGTGGATCCCGCCGCTGGAT
GACCACAAAGGCGTGAGCATGGTGATGGAGTTTCAGGACGCGAAGCTTCA
GGACATTCTCGACGGCAAATTTGACAGCGACATGAAGAATGTGGCCAAGG
TGGCAAAGGAGGACGGTCGCAGGGTGTGGATGCGCCCCCTGCACGAGTTC
AACAGCGACTGGTACTCCTGGGGCACATACAGGGACGGCTTTGAGAAGGT
CAACACGCGCGACCAGTTCAAAAAAGCCTTCCGGAAAATTGTGACGCTCT
TCAGACAGGAGGGCGCGACCAACCTCAGGTGGCAGCTGAGCTACAATAAT
AACAGCCCTAAGGACGACCCGCGGCCGTTTTCGGAGTGGTGGCCGGGGCG
CGATGTGGTGGACATGGTCACATGCAGCGCGTACAACAGAGCCGGCATCG
ACAGCTACCACAAAGACTTCAAGTCCTTCGACGAAGTCTACGGCCCCGCG
TACGACCGCATGAAGAAGCTGGACAAGACAGTCAAGCTAGGCGTGGGGGA
GACGAGCACGTCCGGCGTCGGCGGCAGTCGCTCCGACTGGTTCTACGGCG
CGTTCAAGTCGATTGCCGACGGGCACTACCCGCGCATGCGCCTCATTAAC
TTCTTCCTGGAGAACAAGGACATGGACTGGCGGCTGAACACCCAGTCGGA
GAAGGACGCCTTTGGCCGCGGCCTGCGTTTACTGCGGCCGTGACGACCGT
GAAGCTGGCAGTGGCACCATGTGTCACGCACCGAGGTGCTCTCGTGGAGC
ACAACTTCAACTTTGAGGTGTTCCACAGTTATCTTCAAGTATGTAAGGCA
GGAGGCCCGCGCCCCCCGCCGCCCAAGTTTGTG
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protein sequence of jgi.p|Trimin1|351326

>Trimin1|351326|estExt_Genemark1.C_Ctg_870038 ID=Trimin1|351326|estExt_Genemark1.C_Ctg_870038|Name=jgi.p|Trimin1|351326|organism=Tribonema minus UTEX_B_3156 |type=polypeptide|length=281bp
MSNPPRVGVTTDTVDINDLEDEVNAKLQNVNIYQDVRKLADAWEWIPPLD
DHKGVSMVMEFQDAKLQDILDGKFDSDMKNVAKVAKEDGRRVWMRPLHEF
NSDWYSWGTYRDGFEKVNTRDQFKKAFRKIVTLFRQEGATNLRWQLSYNN
NSPKDDPRPFSEWWPGRDVVDMVTCSAYNRAGIDSYHKDFKSFDEVYGPA
YDRMKKLDKTVKLGVGETSTSGVGGSRSDWFYGAFKSIADGHYPRMRLIN
FFLENKDMDWRLNTQSEKDAFGRGLRLLRP*
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mRNA from alignment at Contig_87:321321..324462-

Legend: polypeptideexonCDSthree_prime_UTR
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_14767 ID=mRNA_14767|Name=jgi.p|Trimin1|351326|organism=Tribonema minus UTEX_B_3156 |type=mRNA|length=3142bp|location=Sequence derived from alignment at Contig_87:321321..324462- (Tribonema minus UTEX_B_3156 )
ATGTCCAACCCGCCGCGCGTGGGGGTGACAACGGACACTGTGGACATAAA CGATTTGGAGGATGAGGTCAATGCCAAATTACAGAACGTCAACATCTACC AGGACGTCAGGAAGCTGGCGGACGCATGGGAGTGGATCGTGAAGGCAAGT CCTGAGATGCCATGTGTACTTGTGGTTTGAGGGTCGATGTGGGTGGAATG GTATCGGCCTTGTATTCAAGGTCCTACAGAGACTTTCAAACACAGTTTGG GTATGGTTCAATAGCAGCTGGTGGTGGCGGCAGTGGCAGAAGCAGTCATG ACTCATCGAGGAACCTCTGTCTAGTGCGGCTATTGCATCGCGCTAGACTT GCATGGCAGCAAGCATGCATGCCCACGCAGCACCACCAACTCATTTATCA GGCTTCAATGTGCCAGAACTGCGTAACAGCTTTGATCACCAATGCTTGCA GCAGCATCAACAGCTTTGTAGCCTACAGCACAGGTGGCAGTTGCAGCACC TACAGACTGACACCACCACCACATATCCATCACAGGATTGACGCGAAAGT GACATTTCCATTGCCCATCATTTTTTGCTCGAAAACAGCCGCCGCTGGAT GACCACAAAGGCGTGAGCATGGTGATGGAGTTTCAGGACGCGAAGCTTCA GGACATTCTCGACGGCAAATTTGACAGCGACATGAAGAATGTGGCCAAGG TGGCAAAGGAGGACGGTCGCAGGGTGTGGATGCGCCCCCTGCACGAGTTC AACAGCGACTGGTGAGTTGGGAGTGGGGGCGCTGATTCAAGGAAAAAGAG CACCGTTGCACCGCTGCCTCTAGGGACTCCTTGAAGCCAGCCCTTCTTGC GCCGGTACAAGGAATGCGAATGGAATCCAACAGTTGGGCATGAAAACAGC CCTCGTTCAGAAATAGATGTCGTCCGGTGTGTGATCGTGCGATATCCGAT GCCTTGGATCCCACACAACTCTGTGGATGCGTTTGTGGCACCTGTCAGTG TGCGTTTGAGGCTTGTATGTTCCCGGTATCCACAGCAGACACAAAGCGGG CGTACACCTCTCACTTGCAGACGCTCCGTTGCTCGCTGCCACCACCCCGC AGGTACTCCTGGGGCACATACAGGGACGGCTTTGAGAAGGTCAACACGCG CGACCAGTTCAAAAAAGCCTTCCGGAAAATTGTGACGCTCTTCAGACAGG AGGGCGCGACCAACCTCAGGTGGCAGCTGAGCTACAATAATAACAGCCCT AAGGACGACCCGCGGCCGTTTTCGGAGTGGTGGCCGGGGCGCGATGTGGT GGACATGGTCACATGCAGCGCGTACAACAGGTGCGTTTCGCTTCAACTTC AAGTGTTGAACTTCAAGTGCTGATGCGCCAATGAGCAGTGAGGCTCGGAT GCGGCGCAAGTGAAGTAGTAAGTCAACTTCAGTTGAAGTAGCACATTGAG ATCAAGCATGGGGCGCAGGCAGGCGCTTGCTCGCTAGTTAAAAGGTGGAG GGCCGAGGCGCGGTGTTGTGCGGGCGTCAATCTTGCTCAACTTAACCCAA AACTTGATCAACTTCAACAGCAAAGCTTCAGTCGTTATACACCACTGCAG TGAGCTCTGCAGACCGGCTTGCTCTGCGTTGGCCGCCAGTGCTCGCTTTG AGCTGACCCCCCACAGCACAGGACATGAACCAAATGCTGTGTGCAACGTG CGCGACCTCAATGGCACTGAACCCTTGACTCCAACCGGACACTCGATAAG ACAGCCCATCTCTCTGCGCCAGCCGCCAGTGCTCCCTTTGAGCTGTTCCC CCCCCCCCTTACTGCCCCGCAGAGCCGGCATCGACAGCTACCACAAAGAC TTCAAGTCCTTCGACGAAGTCTACGGCCCCGCGTACGACCGCATGAAGAA GCTGGACAAGACAGTCAAGCTAGGCGTGGGGGAGACGAGCACGTCCGGCG TCGGCGGCAGTCGCTCCGACTGGTTCTACGGCGCGTTCAAGTCGATTGCC GACGGGCACTACCCGCGCATGCGCCTCATTAACTTCTTCCTGGAGAACAA GGTGCGCGCGGAGCGATTTTAAGTTCAGCATGTGCTCTTCCTTTCCTAAA AGAAATGTTTTCTTCATGAAGAAATAATCAAATTTGCCCTTTATGTAGAA GCATGTAGCAGTCATTTCTTTTCTCTGCCGCAACAACAAAATCCTGCTGC GCCTGCATGAAGTCATCGTGCGCTGCTGCATCATTCAGATGAGATGACAA TCATCAGGGGAAGCTGCAGTGTGTTCAAAATGTGTGTGGCAGCTCAAGCG GCGTGTGCAGCGCGGGGACGGCAAAGTGCGTCCGCGATTGTGCCCGTTTG TACTCACTTTTCCTGTGGAGATGAGAGAGAGGGCGATGGCAGTTGCTTCC GTTAACGCGACTGCCGCTCAAGCGCTGCACGCAAAAGAAGTGCAGCTAAA GCGTAGCACGCAACGACACAGCGCTGCACCCCCATGGCGGCGTACACAGA TCTTCTGCACAGGCAGCCCCCCAATTACTTCGACTGATGGCCCCTTACAC TCGTTGCGTGCCTGCTAAGTTTATCACTCCTGCTGCAACCTCAATTTGAA GTCATCATGGCAGCGCTCAGCGCTGGTCCCATACAGATTGTGCGCCATGC CGTCATGCGCCAAGCCCCTCTGTGCAGCGCGCCGCCGCGTGCGTGCCGCC GCACTCCGAGACGGCTACCGCAGGCGAGCTCGAGTGATCAGTGGCGCACC ACCTCTCTTGCTCATTTGTTGCGCGTCAAACAGAGGCAGCATCGCAATCG GGGAAACTGCGATGTCCAACAGAGGACTGATAGCAGTTTCGTTGCAACTC TCATTGTGGCAATACGGAGGACTGACTGCATTCCTTTTTCCCTTGTGGCT CTCTGCGCTTTTGCGCTGTCGCAACAGGACATGGACTGGCGGCTGAACAC CCAGTCGGAGAAGGACGCCTTTGGCCGCGGCCTGCGTTTACTGCGGCCGT GACGACCGTGAAGCTGGCAGTGGCACCATGTGTCACGCACCGAGGTGCTC TCGTGGAGCACAACTTCAACTTTGAGGTGTTCCACAGTTATCTTCAAGTA TGTAAGGCAGGAGGCCCGCGCCCCCCGCCGCCCAAGTTTGTG
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Coding sequence (CDS) from alignment at Contig_87:321321..324462-

>mRNA_14767 ID=mRNA_14767|Name=jgi.p|Trimin1|351326|organism=Tribonema minus UTEX_B_3156 |type=CDS|length=843bp|location=Sequence derived from alignment at Contig_87:321321..324462- (Tribonema minus UTEX_B_3156 )
ATGTCCAACCCGCCGCGCGTGGGGGTGACAACGGACACTGTGGACATAAA
CGATTTGGAGGATGAGGTCAATGCCAAATTACAGAACGTCAACATCTACC
AGGACGTCAGGAAGCTGGCGGACGCATGGGAGTGGATCCCGCCGCTGGAT
GACCACAAAGGCGTGAGCATGGTGATGGAGTTTCAGGACGCGAAGCTTCA
GGACATTCTCGACGGCAAATTTGACAGCGACATGAAGAATGTGGCCAAGG
TGGCAAAGGAGGACGGTCGCAGGGTGTGGATGCGCCCCCTGCACGAGTTC
AACAGCGACTGGTACTCCTGGGGCACATACAGGGACGGCTTTGAGAAGGT
CAACACGCGCGACCAGTTCAAAAAAGCCTTCCGGAAAATTGTGACGCTCT
TCAGACAGGAGGGCGCGACCAACCTCAGGTGGCAGCTGAGCTACAATAAT
AACAGCCCTAAGGACGACCCGCGGCCGTTTTCGGAGTGGTGGCCGGGGCG
CGATGTGGTGGACATGGTCACATGCAGCGCGTACAACAGAGCCGGCATCG
ACAGCTACCACAAAGACTTCAAGTCCTTCGACGAAGTCTACGGCCCCGCG
TACGACCGCATGAAGAAGCTGGACAAGACAGTCAAGCTAGGCGTGGGGGA
GACGAGCACGTCCGGCGTCGGCGGCAGTCGCTCCGACTGGTTCTACGGCG
CGTTCAAGTCGATTGCCGACGGGCACTACCCGCGCATGCGCCTCATTAAC
TTCTTCCTGGAGAACAAGGACATGGACTGGCGGCTGAACACCCAGTCGGA
GAAGGACGCCTTTGGCCGCGGCCTGCGTTTACTGCGGCCGTGA
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