mRNA_14704 (mRNA) Tribonema minus UTEX_B_3156
|
Overview
Homology
BLAST of jgi.p|Trimin1|352483 vs. uniprot
Match: A0A836CML0_9STRA (AAA domain-containing protein n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A836CML0_9STRA) HSP 1 Score: 1044 bits (2700), Expect = 0.000e+0 Identity = 800/800 (100.00%), Postives = 800/800 (100.00%), Query Frame = 1
Query: 1 MPVLLPNGTVARIEYFPLVDWAPLFMASVAGAQALEVDISNTTELVAHLEHESSGVTTRLIAMMEEQGKEWQAAAQLQLVAQVAASEADVVLAKVEAARERLQHRRRAAAAAEAARNVTRAAEARSVRAVXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXAXARAAADVRXXXXXXXXXXXXXXXXXXXXIGLARVAAQGAGGPRARAHAIVMELIGAADREXXXXXXXXXXALAXXXAAALLENPAVAARAALLAXXXXXXXXXXXXXARGAAEAAERHFAKPALVRETSRSGSLAAEALSWVVPGVVAAAWXXXXXXXXXXXXXXXXXXXXXGGIEGVVVNAALEERLAGVVEGVRGARERGAPLRHVLLHGPPGTGKTLIARRLAQLCGLDFAIMSGGDLAPLGNVAVSALHRLLDWARNCPRGMVLVIDEAEACAGDRRLRRLRMGEAALNCLNTLLYHTSEPSARFMLVLTTSRPSDLEEAILDRVDDMIELPLPERAQRRRMCDMFYNTYIARHSIQQRSTQRGSLLQRLWAPSQAPWALLGAIAAALNTARLAAADGPRPXXXXXXXXXXXXXXXXAEALGXXXXXXXXXXXXXXERLHNCLWAPLQGLIDTSAMAYGAAAADDLARRSSALFSIRTAGAHQHGRDXXXXXXXXXXXXXXXXXXXXXXXGLSGRDIAKLVLAAQAAAYGSDACALTPPLWRAVVDWKLREYARTQRGSLYASAXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXPEVTRLAEVGASDESTPEETRGS 2400
MPVLLPNGTVARIEYFPLVDWAPLFMASVAGAQALEVDISNTTELVAHLEHESSGVTTRLIAMMEEQGKEWQAAAQLQLVAQVAASEADVVLAKVEAARERLQHRRRAAAAAEAARNVTRAAEARSVRAVXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXAXARAAADVRXXXXXXXXXXXXXXXXXXXXIGLARVAAQGAGGPRARAHAIVMELIGAADREXXXXXXXXXXALAXXXAAALLENPAVAARAALLAXXXXXXXXXXXXXARGAAEAAERHFAKPALVRETSRSGSLAAEALSWVVPGVVAAAWXXXXXXXXXXXXXXXXXXXXXGGIEGVVVNAALEERLAGVVEGVRGARERGAPLRHVLLHGPPGTGKTLIARRLAQLCGLDFAIMSGGDLAPLGNVAVSALHRLLDWARNCPRGMVLVIDEAEACAGDRRLRRLRMGEAALNCLNTLLYHTSEPSARFMLVLTTSRPSDLEEAILDRVDDMIELPLPERAQRRRMCDMFYNTYIARHSIQQRSTQRGSLLQRLWAPSQAPWALLGAIAAALNTARLAAADGPRPXXXXXXXXXXXXXXXXAEALGXXXXXXXXXXXXXXERLHNCLWAPLQGLIDTSAMAYGAAAADDLARRSSALFSIRTAGAHQHGRDXXXXXXXXXXXXXXXXXXXXXXXGLSGRDIAKLVLAAQAAAYGSDACALTPPLWRAVVDWKLREYARTQRGSLYASAXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXPEVTRLAEVGASDESTPEETRGS
Sbjct: 1 MPVLLPNGTVARIEYFPLVDWAPLFMASVAGAQALEVDISNTTELVAHLEHESSGVTTRLIAMMEEQGKEWQAAAQLQLVAQVAASEADVVLAKVEAARERLQHRRRAAAAAEAARNVTRAAEARSVRAVXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXAXARAAADVRXXXXXXXXXXXXXXXXXXXXIGLARVAAQGAGGPRARAHAIVMELIGAADREXXXXXXXXXXALAXXXAAALLENPAVAARAALLAXXXXXXXXXXXXXARGAAEAAERHFAKPALVRETSRSGSLAAEALSWVVPGVVAAAWXXXXXXXXXXXXXXXXXXXXXGGIEGVVVNAALEERLAGVVEGVRGARERGAPLRHVLLHGPPGTGKTLIARRLAQLCGLDFAIMSGGDLAPLGNVAVSALHRLLDWARNCPRGMVLVIDEAEACAGDRRLRRLRMGEAALNCLNTLLYHTSEPSARFMLVLTTSRPSDLEEAILDRVDDMIELPLPERAQRRRMCDMFYNTYIARHSIQQRSTQRGSLLQRLWAPSQAPWALLGAIAAALNTARLAAADGPRPXXXXXXXXXXXXXXXXAEALGXXXXXXXXXXXXXXERLHNCLWAPLQGLIDTSAMAYGAAAADDLARRSSALFSIRTAGAHQHGRDXXXXXXXXXXXXXXXXXXXXXXXGLSGRDIAKLVLAAQAAAYGSDACALTPPLWRAVVDWKLREYARTQRGSLYASAXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXPEVTRLAEVGASDESTPEETRGS 800
BLAST of jgi.p|Trimin1|352483 vs. uniprot
Match: W4FKJ4_9STRA (AAA domain-containing protein n=3 Tax=Aphanomyces astaci TaxID=112090 RepID=W4FKJ4_9STRA) HSP 1 Score: 203 bits (517), Expect = 6.750e-52 Identity = 108/241 (44.81%), Postives = 148/241 (61.41%), Query Frame = 1
Query: 880 ERHFAKPALVRETSRSGSLAAEALSWVVPGVVAAAWXXXXXXXXXXXXXXXXXXXXXGGIEGVVVNAALEERLAGVVEGVRGARERGAPLRHVLLHGPPGTGKTLIARRLAQLCGLDFAIMSGGDLAPLGNVAVSALHRLLDWARNCPRGMVLVIDEAEACAGDRRLRRLRMGEAALNCLNTLLYHTSEPSARFMLVLTTSRPSDLEEAILDRVDDMIELPLPERAQRRRMCDMFYNTYIA 1602
E+ KP+L+RETSR G L SW V ++ + VVV+AALE RL G+ R A++ AP RH+LL+GPPGTGKT++A+RLA G+D+AIMSGGD+ PLG+ AV+ LH L WA++ PRG+++ IDEAEA G R R+ M EA N LN LL+HT + +FMLV+ T+RP DL+ AI DR+DD + LPE A+R R+ ++Y+ +A
Sbjct: 371 EQRLGKPSLIRETSRQGGLLGWFRSWFQAPVGLESF------------------------QDVVVHAALESRLLGLARATRNAKKHNAPYRHLLLYGPPGTGKTMVAKRLAAASGMDYAIMSGGDVGPLGSDAVTELHALFHWAQSSPRGVLIFIDEAEAFLGCRATRKTHMSEAMRNALNALLFHTGTQTKQFMLVIATNRPEDLDTAITDRIDDALLFDLPEPAERLRLMRLYYHECVA 587
BLAST of jgi.p|Trimin1|352483 vs. uniprot
Match: A0A0P1AST5_PLAHL (Atpase family aaa domain-containing protein 3-b-like n=1 Tax=Plasmopara halstedii TaxID=4781 RepID=A0A0P1AST5_PLAHL) HSP 1 Score: 198 bits (503), Expect = 1.260e-50 Identity = 102/241 (42.32%), Postives = 143/241 (59.34%), Query Frame = 1
Query: 880 ERHFAKPALVRETSRSGSLAAEALSWVVPGVVAAAWXXXXXXXXXXXXXXXXXXXXXGGIEGVVVNAALEERLAGVVEGVRGARERGAPLRHVLLHGPPGTGKTLIARRLAQLCGLDFAIMSGGDLAPLGNVAVSALHRLLDWARNCPRGMVLVIDEAEACAGDRRLRRLRMGEAALNCLNTLLYHTSEPSARFMLVLTTSRPSDLEEAILDRVDDMIELPLPERAQRRRMCDMFYNTYIA 1602
E+ KP+L+RETSR+ + G + A W + GVV+ +L R+ + R A + GAP RH+LL+GPPGTGKT++A+RLA+ G+D+AI+SGGD+ PLG+ AV+ LH L WA + P G+++ IDEAEA G R R+ M EA N LN LLYHT S +FMLV+ T+RP DL+ A+ DR+DD + LPE +R R+ M++N Y+A
Sbjct: 274 EQRLGKPSLIRETSRTSGMI---------GFINALWRRKPVNEQNE-------------LAGVVLQKSLATRVLEIARSTRNAMQHGAPYRHLLLYGPPGTGKTMVAKRLARTSGMDYAILSGGDVGPLGSDAVTELHALFQWANSSPNGVLIFIDEAEAFLGCRATRKTHMSEAMRNALNALLYHTGAQSKKFMLVVATNRPEDLDTAVTDRIDDTLHFDLPEINERLRLLQMYFNEYVA 492
BLAST of jgi.p|Trimin1|352483 vs. uniprot
Match: A0A6G0Q5C4_9STRA (AAA domain-containing protein (Fragment) n=3 Tax=Phytophthora fragariae TaxID=53985 RepID=A0A6G0Q5C4_9STRA) HSP 1 Score: 191 bits (485), Expect = 1.440e-50 Identity = 91/179 (50.84%), Postives = 124/179 (69.27%), Query Frame = 1
Query: 1066 VVVNAALEERLAGVVEGVRGARERGAPLRHVLLHGPPGTGKTLIARRLAQLCGLDFAIMSGGDLAPLGNVAVSALHRLLDWARNCPRGMVLVIDEAEACAGDRRLRRLRMGEAALNCLNTLLYHTSEPSARFMLVLTTSRPSDLEEAILDRVDDMIELPLPERAQRRRMCDMFYNTYIA 1602
VV+ ALE R+ + R A GAP RH+LL+GPPGTGKT++A+RLA+ G+D+AI+SGGD+ PLG+ AV+ LH L WA + PRG+++ IDEAEA G R R+ M EA N LN LLYHT S +FMLV+ T+RP DL+ A+ DR+DD + LPE +R R+ M+++ Y+A
Sbjct: 65 VVLRNALETRVFEIARSTRNAMLHGAPYRHLLLYGPPGTGKTMVAKRLARASGMDYAILSGGDVGPLGSDAVTELHALFKWANSSPRGVLIFIDEAEAFLGCRATRKTHMSEAMRNALNALLYHTGTQSKKFMLVVATNRPEDLDTAVTDRIDDTLHFDLPETKERVRLLQMYFDEYVA 243
BLAST of jgi.p|Trimin1|352483 vs. uniprot
Match: A0A024UDM1_9STRA (AAA domain-containing protein n=1 Tax=Aphanomyces invadans TaxID=157072 RepID=A0A024UDM1_9STRA) HSP 1 Score: 196 bits (498), Expect = 2.360e-49 Identity = 104/242 (42.98%), Postives = 143/242 (59.09%), Query Frame = 1
Query: 880 ERHFAKPALVRETSRSGSLAAEALSWVVPGVVAAAWXXXXXXXXXXXXXXXXXXXXXGGIEGVVVNAALEERLAGVVEGVRGARERGAPLRHVLLHGPPGTGKTLIARRLAQLCGLDFAIMSGGDLAPLGNVAVSALHRLLDWARNCPRGMVLVIDEAEACAGDRRLRRLRMGEAALNCLNTLLYHTSEPSARFMLVLTTSRPSDLEEAILDRVDDMIELPLPERAQRRRMCDMFYNTYIAR 1605
E+ KP+LVRETSR G W+ + VVV+AALE RL G+ R A++ P RH+LL+GPPGTGKT++A+RLA G+D+AIMSGGD+ PLG+ AV+ LH L WA++ PRG+++ IDEAEA G R R+ M EA N LN LL+HT + +FMLV+ T+RP DL+ A+ DR+DD + LPE A+R R+ +Y+ +A+
Sbjct: 372 EQRLGKPSLVRETSRKGGF----FGWL--------------------RSVFQVPVGLESFQDVVVHAALETRLLGLARATRNAKKHNVPYRHLLLYGPPGTGKTMVAKRLAAASGMDYAIMSGGDVGPLGSDAVTELHALFRWAQSSPRGVLIFIDEAEAFLGCRATRKTHMSEAMRNALNALLFHTGTQTKQFMLVIATNRPEDLDTAVTDRIDDALHFNLPEAAERLRLMRQYYHECVAK 589
BLAST of jgi.p|Trimin1|352483 vs. uniprot
Match: A0A662XUE1_9STRA (AAA domain-containing protein n=2 Tax=Nothophytophthora sp. Chile5 TaxID=2483409 RepID=A0A662XUE1_9STRA) HSP 1 Score: 197 bits (500), Expect = 2.400e-49 Identity = 106/241 (43.98%), Postives = 144/241 (59.75%), Query Frame = 1
Query: 880 ERHFAKPALVRETSRSGSLAAEALSWVVPGVVAAAWXXXXXXXXXXXXXXXXXXXXXGGIEGVVVNAALEERLAGVVEGVRGARERGAPLRHVLLHGPPGTGKTLIARRLAQLCGLDFAIMSGGDLAPLGNVAVSALHRLLDWARNCPRGMVLVIDEAEACAGDRRLRRLRMGEAALNCLNTLLYHTSEPSARFMLVLTTSRPSDLEEAILDRVDDMIELPLPERAQRRRMCDMFYNTYIA 1602
E+ KP+LVRETSRS +W G + A + + VV+ ALE R+ + R A GAP RH+LL+GPPGTGKT++A+RLA+ G+D+AI+SGGD+ PLG+ AV+ LH L WA + PRG+++ IDEAEA G R R+ M EA N LN LLYHT S +FMLV+ T+RP DL+ A+ DR+DD + LPE +R R+ M++N Y+A
Sbjct: 398 EQRLGKPSLVRETSRSSG------AW---GFIRALFRRNSAKGQNE-------------LADVVLRDALETRVFEIARSTRNAMLHGAPYRHLLLYGPPGTGKTMVAKRLARASGMDYAILSGGDVGPLGSDAVTELHALFHWANSSPRGVLIFIDEAEAFLGCRATRKTHMSEAMRNALNALLYHTGTQSKKFMLVVATNRPEDLDTAVTDRIDDTLHFDLPEAKERVRLLQMYFNEYVA 616
BLAST of jgi.p|Trimin1|352483 vs. uniprot
Match: A0A225WZW4_9STRA (AAA domain-containing protein n=1 Tax=Phytophthora megakarya TaxID=4795 RepID=A0A225WZW4_9STRA) HSP 1 Score: 195 bits (495), Expect = 7.020e-49 Identity = 105/242 (43.39%), Postives = 146/242 (60.33%), Query Frame = 1
Query: 880 ERHFAKPALVRETSRS-GSLAAEALSWVVPGVVAAAWXXXXXXXXXXXXXXXXXXXXXGGIEGVVVNAALEERLAGVVEGVRGARERGAPLRHVLLHGPPGTGKTLIARRLAQLCGLDFAIMSGGDLAPLGNVAVSALHRLLDWARNCPRGMVLVIDEAEACAGDRRLRRLRMGEAALNCLNTLLYHTSEPSARFMLVLTTSRPSDLEEAILDRVDDMIELPLPERAQRRRMCDMFYNTYIA 1602
E+ KP+LVRETSRS G+L G ++A + + VV+ + LE R+ + R A GAP RH+LL+GPPGTGKT++A+RLA+ G+D+AI+SGGD+ PLG+ AV+ LH L WA + PRG+++ IDEAEA G R R+ M EA N LN LL+HT S +FMLV+ T+RP DL+ A+ DR+DD + LPE +R R+ M++N Y+A
Sbjct: 367 EQRLGKPSLVRETSRSSGAL----------GFLSALFRRKSAKGQNE-------------LADVVLRSTLETRILEIARSTRNAMLHGAPYRHLLLYGPPGTGKTMVAKRLARASGMDYAILSGGDVGPLGSDAVTELHALFKWANSSPRGVLIFIDEAEAFLGCRATRKTHMSEAMRNALNALLFHTGTQSKKFMLVVATNRPEDLDNAVTDRIDDTLHFDLPEAKERVRLLQMYFNEYVA 585
BLAST of jgi.p|Trimin1|352483 vs. uniprot
Match: A0A3F2RDF9_9STRA (AAA domain-containing protein n=3 Tax=Phytophthora kernoviae TaxID=325452 RepID=A0A3F2RDF9_9STRA) HSP 1 Score: 194 bits (492), Expect = 1.360e-48 Identity = 92/183 (50.27%), Postives = 126/183 (68.85%), Query Frame = 1
Query: 1066 VVVNAALEERLAGVVEGVRGARERGAPLRHVLLHGPPGTGKTLIARRLAQLCGLDFAIMSGGDLAPLGNVAVSALHRLLDWARNCPRGMVLVIDEAEACAGDRRLRRLRMGEAALNCLNTLLYHTSEPSARFMLVLTTSRPSDLEEAILDRVDDMIELPLPERAQRRRMCDMFYNTYIARHSI 1614
VV+ + LE R+ + R A GAP RH+LL+GPPGTGKT++A+RLA+ GLD+AI+SGGD+ PLG+ AV+ LH L WA + PRG+++ IDEAEA G R R+ M EA N LN LLYHT S +FMLV+ T+RP DL+ A+ DR+DD + LPE +R R+ M++N Y+A ++
Sbjct: 392 VVLRSMLETRVFEIARSTRNAMVHGAPYRHLLLYGPPGTGKTMVAKRLARASGLDYAILSGGDVGPLGSDAVTELHALFKWANSSPRGVLIFIDEAEAFLGCRATRKTHMSEAMRNALNALLYHTGTQSKKFMLVVATNRPEDLDTAVTDRIDDALHFDLPESKERVRLLQMYFNEYVAHLTV 574
BLAST of jgi.p|Trimin1|352483 vs. uniprot
Match: H3GD81_PHYRM (AAA domain-containing protein n=1 Tax=Phytophthora ramorum TaxID=164328 RepID=H3GD81_PHYRM) HSP 1 Score: 194 bits (493), Expect = 1.670e-48 Identity = 104/241 (43.15%), Postives = 143/241 (59.34%), Query Frame = 1
Query: 880 ERHFAKPALVRETSRSGSLAAEALSWVVPGVVAAAWXXXXXXXXXXXXXXXXXXXXXGGIEGVVVNAALEERLAGVVEGVRGARERGAPLRHVLLHGPPGTGKTLIARRLAQLCGLDFAIMSGGDLAPLGNVAVSALHRLLDWARNCPRGMVLVIDEAEACAGDRRLRRLRMGEAALNCLNTLLYHTSEPSARFMLVLTTSRPSDLEEAILDRVDDMIELPLPERAQRRRMCDMFYNTYIA 1602
E+ KP+LVRETSRS G ++A + + VV+ + LE R+ + R A GAP RH+LL+GPPGTGKT++A+RLA+ G+D+AI+SGGD+ PLG+ AV+ LH L WA + PRG+++ IDEAEA G R R+ M EA N LN LLYHT S +FMLV+ T+RP DL+ A+ DR+DD + LPE +R R+ M++N Y+A
Sbjct: 388 EQRLGKPSLVRETSRSAGAF---------GFLSALFRRKAPKGQNE-------------LADVVLRSMLETRVFEIARSTRNAMLHGAPYRHLLLYGPPGTGKTMVAKRLARASGMDYAILSGGDVGPLGSDAVTELHALFKWANSSPRGVLIFIDEAEAFLGCRATRKTHMSEAMRNALNALLYHTGTQSKKFMLVVATNRPEDLDTAVTDRIDDTLHFDLPEAKERVRLLQMYFNEYVA 606
BLAST of jgi.p|Trimin1|352483 vs. uniprot
Match: A0A1V9ZQ09_9STRA (Uncharacterized protein n=1 Tax=Thraustotheca clavata TaxID=74557 RepID=A0A1V9ZQ09_9STRA) HSP 1 Score: 197 bits (501), Expect = 1.910e-48 Identity = 104/240 (43.33%), Postives = 145/240 (60.42%), Query Frame = 1
Query: 880 ERHFAKPALVRETSRSGSLAAEALSWVVPGVVAAAWXXXXXXXXXXXXXXXXXXXXXGGIEGVVVNAALEERLAGVVEGVRGARERGAPLRHVLLHGPPGTGKTLIARRLAQLCGLDFAIMSGGDLAPLGNVAVSALHRLLDWARNCPRGMVLVIDEAEACAGDRRLRRLRMGEAALNCLNTLLYHTSEPSARFMLVLTTSRPSDLEEAILDRVDDMIELPLPERAQRRRMCDMFYNTYI 1599
E+ KP+LVRETSR G L SW + + VVV+AALE RL + + + A++ GAP RH+LL+GPPGTGKT++A+RLA G+D+AIMSGGD+ PLG+ AV+ LH L WA+ PRG+++ IDEAEA G R R+ M EA N LN LL+HT + +FMLV+ T+RP DL+ AI DR+DD + LPE +R R+ ++++ ++
Sbjct: 759 EQRLGKPSLVRETSRRGGLYGWLRSWFDKPLGVEP------------------------LSDVVVHAALETRLYNLAKSTKNAKKHGAPYRHLLLYGPPGTGKTMVAKRLAICSGMDYAIMSGGDVGPLGSDAVTELHALFRWAQASPRGVLIFIDEAEAFLGCRATRKTHMSEAMRNALNALLFHTGSQTKQFMLVIATNRPEDLDSAITDRIDDALHFELPETNERIRLLELYFTEFV 974 The following BLAST results are available for this feature:
BLAST of jgi.p|Trimin1|352483 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90) Total hits: 25
Pagesback to topAlignments
The following features are aligned
Analyses
This mRNA is derived from or has results from the following analyses
Properties
Relationships
This mRNA is a part of the following gene feature(s):
The following polypeptide feature(s) derives from this mRNA:
The following exon feature(s) are a part of this mRNA:
The following three_prime_UTR feature(s) are a part of this mRNA:
The following CDS feature(s) are a part of this mRNA:
Sequences
The following sequences are available for this feature:
spliced messenger RNA >mRNA_14704 ID=mRNA_14704|Name=jgi.p|Trimin1|352483|organism=Tribonema minus UTEX_B_3156 |type=mRNA|length=2651bp|location=Sequence derived from alignment at Contig_120:187454..197424- (Tribonema minus UTEX_B_3156 )|Notes=Excludes all bases but those of type(s): exon. ATGCCGGTGCTGCTGCCGAATGGCACCGTGGCGCGCATTGAGTACTTCCCback to top protein sequence of jgi.p|Trimin1|352483 >Trimin1|352483|estExt_Genemark1.C_Ctg_1200025 ID=Trimin1|352483|estExt_Genemark1.C_Ctg_1200025|Name=jgi.p|Trimin1|352483|organism=Tribonema minus UTEX_B_3156 |type=polypeptide|length=801bp MPVLLPNGTVARIEYFPLVDWAPLFMASVAGAQALEVDISNTTELVAHLEback to top mRNA from alignment at Contig_120:187454..197424- Legend: polypeptideexonCDSthree_prime_UTR Hold the cursor over a type above to highlight its positions in the sequence below.>mRNA_14704 ID=mRNA_14704|Name=jgi.p|Trimin1|352483|organism=Tribonema minus UTEX_B_3156 |type=mRNA|length=9971bp|location=Sequence derived from alignment at Contig_120:187454..197424- (Tribonema minus UTEX_B_3156 )back to top Coding sequence (CDS) from alignment at Contig_120:187454..197424- >mRNA_14704 ID=mRNA_14704|Name=jgi.p|Trimin1|352483|organism=Tribonema minus UTEX_B_3156 |type=CDS|length=2403bp|location=Sequence derived from alignment at Contig_120:187454..197424- (Tribonema minus UTEX_B_3156 )back to top |