mRNA_14681 (mRNA) Tribonema minus UTEX_B_3156
Overview
Homology
BLAST of jgi.p|Trimin1|339409 vs. uniprot
Match: A0A835YGV5_9STRA (USP domain-containing protein n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A835YGV5_9STRA) HSP 1 Score: 660 bits (1702), Expect = 7.990e-238 Identity = 367/367 (100.00%), Postives = 367/367 (100.00%), Query Frame = 2 Query: 71 MADHAATKGRKQKRNCSDNPRCLYGLGEGKISGFAAKQDSNSTQTVCSMLGVIVALQRVCNKSIIKSTNSIFLELQSGGFCKQHHACTGELTLQDCINNQGKEGIWAKKPSLLTSLGPDPARARRKPLAALKGETGEAAGVDDKGDQEQESGGVLPASGALMPVGLRNLGATCYLNAQLQCWFHLIPFRRRIYNCSTEAIADERNRQVVHALQAVFGHLQCGDASVHDVAVKYRHNQQWXXXXXXXXXXXXXXXXXXXXXXXAPLASLLELNTAEQQDPSEFNVLFAQLLARCLSNGRSDAPGVQGGSSSXXXXXXXXXXXXXASEIEDLFRIDAEMTTRCCKCGYVSRRPDPSIELRLPIKASLLS 1171 MADHAATKGRKQKRNCSDNPRCLYGLGEGKISGFAAKQDSNSTQTVCSMLGVIVALQRVCNKSIIKSTNSIFLELQSGGFCKQHHACTGELTLQDCINNQGKEGIWAKKPSLLTSLGPDPARARRKPLAALKGETGEAAGVDDKGDQEQESGGVLPASGALMPVGLRNLGATCYLNAQLQCWFHLIPFRRRIYNCSTEAIADERNRQVVHALQAVFGHLQCGDASVHDVAVKYRHNQQWXXXXXXXXXXXXXXXXXXXXXXXAPLASLLELNTAEQQDPSEFNVLFAQLLARCLSNGRSDAPGVQGGSSSXXXXXXXXXXXXXASEIEDLFRIDAEMTTRCCKCGYVSRRPDPSIELRLPIKASLLS Sbjct: 1 MADHAATKGRKQKRNCSDNPRCLYGLGEGKISGFAAKQDSNSTQTVCSMLGVIVALQRVCNKSIIKSTNSIFLELQSGGFCKQHHACTGELTLQDCINNQGKEGIWAKKPSLLTSLGPDPARARRKPLAALKGETGEAAGVDDKGDQEQESGGVLPASGALMPVGLRNLGATCYLNAQLQCWFHLIPFRRRIYNCSTEAIADERNRQVVHALQAVFGHLQCGDASVHDVAVKYRHNQQWXXXXXXXXXXXXXXXXXXXXXXXAPLASLLELNTAEQQDPSEFNVLFAQLLARCLSNGRSDAPGVQGGSSSXXXXXXXXXXXXXASEIEDLFRIDAEMTTRCCKCGYVSRRPDPSIELRLPIKASLLS 367
BLAST of jgi.p|Trimin1|339409 vs. uniprot
Match: A0A8K1C628_PYTOL (Uncharacterized protein n=1 Tax=Pythium oligandrum TaxID=41045 RepID=A0A8K1C628_PYTOL) HSP 1 Score: 88.6 bits (218), Expect = 3.260e-15 Identity = 76/271 (28.04%), Postives = 105/271 (38.75%), Query Frame = 2 Query: 353 DCINNQGK--EGIWAKKPSLLTSLGPDPARARRKPLAALKGETGEAAGVDDKGDQEQESGGVLPASGALMPVGLRNLGATCYLNAQLQCWFHLIPFRRRIYNCST-EAIADERNRQVVHALQAVFGHLQCGDASVHDVAVKYRHNQQWXXXXXXXXXXXXXXXXXXXXXXXAPLASLLELNTAEQQDPSEFNVLFAQLLARCLSNGRSDAPGVQGGSSSXXXXXXXXXXXXXASEIEDLFRIDAEMTTRCCKCGYVSRRPDPSIELRLPIK 1156 +C+ G+ +GIW K + LG DP +R P + A V D A+ P GLRNLGATCYLN+ LQC F + PFR+ +Y+ E + + Q + ALQ +FG +Q G+ +V+D A AS L LN QQD EFN L + S R + G ++ LF+ T+C +C S RP E+ L IK Sbjct: 63 NCLYGLGEYQKGIWQTKKLVRRLLGDDPRELQRAPYTS--------AAVTDL------------ATTRWAPCGLRNLGATCYLNSMLQCLFMIQPFRQAVYSWEPQEKNVNPQQVQQMRALQRLFGAMQSGNKNVYD---------------------------------PAEFASTLSLNNVVQQDAQEFNKLLLAHIRGIFSQSRLEHHG---------------------ELVDQLFQGQMNYVTKCLRCNQRSSRPSSYQEISLNIK 259
BLAST of jgi.p|Trimin1|339409 vs. uniprot
Match: G4ZAZ0_PHYSP (Uncharacterized protein n=1 Tax=Phytophthora sojae (strain P6497) TaxID=1094619 RepID=G4ZAZ0_PHYSP) HSP 1 Score: 88.6 bits (218), Expect = 3.350e-15 Identity = 76/290 (26.21%), Postives = 107/290 (36.90%), Query Frame = 2 Query: 320 HHACTGELT--LQDCINN--------QGKEGIWAKKPSLLTSLGPDPARARRKPLAALKGETGEAAGVDDKGDQEQESGGVLPASGALMPVGLRNLGATCYLNAQLQCWFHLIPFRRRIYNCST-EAIADERNRQVVHALQAVFGHLQCGDASVHDVAVKYRHNQQWXXXXXXXXXXXXXXXXXXXXXXXAPLASLLELNTAEQQDPSEFNVLFAQLLARCLSNGRSDAPGVQGGSSSXXXXXXXXXXXXXASEIEDLFRIDAEMTTRCCKCGYVSRRPDPSIELRLPIK 1156 HH G L++C +N + +G+W ++ LL GPDP RARR+ +G MP GLRNLGATCYLN+ LQC F +PFRR +Y + + DE + + ALQ +F +Q G+ S +D + AS L LN QQD EF+ L L R + ++ +F+ T+C +C S RP E+ L IK Sbjct: 85 HHKKRGRAASALRNCADNPNCLYGLGERLKGVWRRESLLLRVFGPDP-RARRRGSGR---------------------------AGRPMPCGLRNLGATCYLNSMLQCLFVNLPFRRAVYGWEPKQPLTDEEQARTMRALQKLFAQMQLGNESYYD---------------------------------PSEFASTLSLNNVMQQDAQEFSKLLLTHLRAIFGQSRISS---------------------HWDLVDRIFQGQMSYVTKCLRCKNKSMRPSSYYEISLNIK 292
BLAST of jgi.p|Trimin1|339409 vs. uniprot
Match: A0A6A3WD98_9STRA (Uncharacterized protein n=4 Tax=Phytophthora TaxID=4783 RepID=A0A6A3WD98_9STRA) HSP 1 Score: 85.5 bits (210), Expect = 3.430e-14 Identity = 75/290 (25.86%), Postives = 106/290 (36.55%), Query Frame = 2 Query: 320 HHACTGELT--LQDCINN--------QGKEGIWAKKPSLLTSLGPDPARARRKPLAALKGETGEAAGVDDKGDQEQESGGVLPASGALMPVGLRNLGATCYLNAQLQCWFHLIPFRRRIYNCST-EAIADERNRQVVHALQAVFGHLQCGDASVHDVAVKYRHNQQWXXXXXXXXXXXXXXXXXXXXXXXAPLASLLELNTAEQQDPSEFNVLFAQLLARCLSNGRSDAPGVQGGSSSXXXXXXXXXXXXXASEIEDLFRIDAEMTTRCCKCGYVSRRPDPSIELRLPIK 1156 HH G+ L++C +N + ++G+W ++ LL GPDP RARR+ +G P GLRNLGATCYLN+ LQC F +PFRR +Y E + D+ + ALQ +F +Q G+ S +D AS L LN QQD EF+ L L R + ++ +F+ T+C +C S RP E+ L IK Sbjct: 34 HHRRRGKAASALRNCADNPNCLYGLGERQKGVWRRESLLLRVFGPDP-RARRRGSGR---------------------------AGRPTPCGLRNLGATCYLNSMLQCLFVNLPFRRAVYEWEPKETLVDKEQALQMRALQKLFAQMQLGNESYYD---------------------------------PTEFASTLSLNNVMQQDAQEFSKLLLTHLRTIFGQSRFSS---------------------HWDLVDRIFQGQMSYVTKCLRCKNKSMRPSSYYEISLNIK 241
BLAST of jgi.p|Trimin1|339409 vs. uniprot
Match: A0A8K0JIF0_9TREE (Uncharacterized protein n=2 Tax=Filobasidium floriforme TaxID=5210 RepID=A0A8K0JIF0_9TREE) HSP 1 Score: 82.8 bits (203), Expect = 2.600e-13 Identity = 64/204 (31.37%), Postives = 82/204 (40.20%), Query Frame = 2 Query: 551 LMPVGLRNLGATCYLNAQLQCWFHLIPFRRRIYNCSTEAIADERNRQVVHALQAVFGHLQCGDASVHDVAVKYRHNQQWXXXXXXXXXXXXXXXXXXXXXXXAPLASLLELNTAEQQDPSEFNVLFAQLLARCLSNGRSDAPGVQGGSSSXXXXXXXXXXXXXASEIEDLFRIDAEMTTRCCKCGYVSRRPDPSIELRLPIKAS 1162 ++PVGLRNLGATCY NA LQ W+ ++PFR +Y C+T+ + AL F LQ SV D A L L L +QQD SEF+ LF LL S +DA S I D F + T C CGYVS RP+ +EL + ++ S Sbjct: 219 VLPVGLRNLGATCYANAFLQLWYRILPFRAAVYACATDPTMPSTSPCFQLAL--TFTGLQKSARSVFD---------------------------------PAGLVEALRLEKGDQQDASEFSKLFMALLQTEFSK-NADAK--------------------VKSVINDQFEGKLKYRTECMTCGYVSERPENFLELEISMEGS 366
BLAST of jgi.p|Trimin1|339409 vs. uniprot
Match: A0A024U320_9STRA (Uncharacterized protein n=1 Tax=Aphanomyces invadans TaxID=157072 RepID=A0A024U320_9STRA) HSP 1 Score: 82.0 bits (201), Expect = 4.330e-13 Identity = 83/322 (25.78%), Postives = 110/322 (34.16%), Query Frame = 2 Query: 8 APEEADVGGDPYRLLGHSCCTMADH-------AATKGRK-----QKRNCSDNPRCLYGLGEGKISGFAAKQDSNSTQTVCSMLGVIVALQRVCNKSIIKSTNSIFLELQSGGFCKQHHACTGELTLQDCINNQGKEGIWAKKPSLLTSLGPDPARARRKPLAALKGETGEAAGVDDKGDQEQESGGVLPASGALMPVGLRNLGATCYLNAQLQCWFHLIPFRRRIYNCS---TEAIADERNRQVVHALQAVFGHLQCGDASVHDVAVKYRHNQQWXXXXXXXXXXXXXXXXXXXXXXXAPLASLLELNTAEQQDPSEFNVLF 928 A AD DPY +C ++ DH +A RK Q+RNC DNP CL+GLGE +A +GIW PS+L LGPDP+ R P++ +D + E+G P GLRNLGATCY+N+ +QC F + FRR ++ T+ ++ Q+ ALQ +F H+Q G S D AS LELN QQD EF L Sbjct: 23 AVRTADAPSDPYNCSLRAC-SLEDHHPVSVAKSAPHARKPRAARQRRNCQDNPNCLFGLGE-----YA-------------------------------------------------------------------DGIWKTNPSVLADLGPDPSTMLRSPVSE-----------EDTNNNHDENGA--------RPCGLRNLGATCYVNSMVQCLFMTMSFRRAVHEWEPKETQHLSPVLLAQM-QALQRLFAHMQLGARSFAD---------------------------------PQEFASKLELNNVVQQDAHEFTKLL 218
BLAST of jgi.p|Trimin1|339409 vs. uniprot
Match: A0A4D9CSF5_9STRA (USP domain-containing protein n=1 Tax=Nannochloropsis salina CCMP1776 TaxID=1027361 RepID=A0A4D9CSF5_9STRA) HSP 1 Score: 80.9 bits (198), Expect = 1.170e-12 Identity = 108/410 (26.34%), Postives = 140/410 (34.15%), Query Frame = 2 Query: 38 PYR---LLGHSCCTMADHAATKGRKQKRNCSDNPRCLYGLGEGKISGFAAKQDSNSTQTVCSMLGVIVALQRVCNKSIIKSTNSIFLELQSGGFCKQHHACTGELTLQDCINNQGKEGIWAKKPSLLTSLGPDPARAR-RKPLAALKGETG--------------EAAGVDDKGDQ--------EQESGGVLPASGALM-PVGLRNLGATCYLNAQLQCWFHLIPFRRRIYNC--------STEAIADERNRQVVHALQAVFGHLQCGDASVHDVAVKYRHNQQWXXXXXXXXXXXXXXXXXXXXXXXAPLASLLELNTAEQQDPSEFNVLFAQLLARCLSNGRSDAPGVQGGSSSXXXXXXXXXXXXXASEIEDLFRIDAEMTTRCCKCGYVSRRPDPSIELRLPIKAS 1162 PYR L + CT ADH G NC+ NP C+YGL +GK G + S Q++ +++ + +S+ K +Q A G + C R R R ++A G TG E AG + G + QE+GG PA L PVGLRNLGATCYLN LQ F FR+ +Y E ER ++ LQ +F H+Q G A D R LL L+ +QQDP EF LF + C +P AS + L R T C CG SRR P EL L + S Sbjct: 38 PYRAGNLENYPRCTSADH----GTGGTGNCAANPHCVYGL-KGKKEGIWSTSKSLLVQSLGEDPAMLIRGWKPPVRSVYKGGTERGGRAGKTETGRQSGASMGR---KGCGGXXXXXXXXXXXXXXXXXXXXGGTRKRARTSVSAEDGSTGGAKSLECDDRAVGAEQAGAEGMGREGREQVLTKAQEAGG--PAEAYLKTPVGLRNLGATCYLNVLLQALFFNRRFRQAVYEFRPPSGPRPGEEGGRKERMVLILQELQRLFAHMQLGMAREGDPREFVR---------------------------------LLRLDRGQQQDPQEFRRLFLGKIEECFGALSPSSP-------------PSSPSPDLASMVRSLHRGRLLYLTTCLSCGTASRREGPFDELELSLLPS 391
BLAST of jgi.p|Trimin1|339409 vs. uniprot
Match: D0MUE6_PHYIT (Ubiquitin-specific protease, putative n=2 Tax=Phytophthora infestans TaxID=4787 RepID=D0MUE6_PHYIT) HSP 1 Score: 80.5 bits (197), Expect = 1.520e-12 Identity = 63/222 (28.38%), Postives = 86/222 (38.74%), Query Frame = 2 Query: 494 DDKGDQEQESGGVLPASGALMPVGLRNLGATCYLNAQLQCWFHLIPFRRRIYNCSTEA-IADERNRQVVHALQAVFGHLQCGDASVHDVAVKYRHNQQWXXXXXXXXXXXXXXXXXXXXXXXAPLASLLELNTAEQQDPSEFNVLFAQLLARCLSNGRSDAPGVQGGSSSXXXXXXXXXXXXXASEIEDLFRIDAEMTTRCCKCGYVSRRPDPSIELRLPIK 1156 DD ++E+ES G MP GLRNLGATCYLN+ LQC F +PFR+ +Y + + D+ Q + ALQ +F +Q G+ S +D AS L LN QQD EF+ L L + R ++ +F+ T+C KC S RP E+ L IK Sbjct: 78 DDPRERERESN----KHGKPMPCGLRNLGATCYLNSMLQCLFVNLPFRQAVYEWEPKGQLVDKEQAQQMRALQKLFAQMQLGNESYYD---------------------------------PTEFASTLSLNNVMQQDAQEFSKLLLAHLRTIFGHSRFSR---------------------HWDLVDRIFQGQMSYVTKCLKCKNKSMRPSSYYEISLNIK 241
BLAST of jgi.p|Trimin1|339409 vs. uniprot
Match: A0A485KRV7_9STRA (Aste57867_10741 protein n=1 Tax=Aphanomyces stellatus TaxID=120398 RepID=A0A485KRV7_9STRA) HSP 1 Score: 78.2 bits (191), Expect = 7.760e-12 Identity = 79/314 (25.16%), Postives = 102/314 (32.48%), Query Frame = 2 Query: 35 DPYRLLGHSCCTMADHAA---------TKGRKQK-----RNCSDNPRCLYGLGEGKISGFAAKQDSNSTQTVCSMLGVIVALQRVCNKSIIKSTNSIFLELQSGGFCKQHHACTGELTLQDCINNQGKEGIWAKKPSLLTSLGPDPARARRKPLAALKGETGEAAGVDDKGDQEQESGGVLPASGALMPVGLRNLGATCYLNAQLQCWFHLIPFRRRIYNCSTEAIADERNRQV--VHALQAVFGHLQCGDASVHDVAVKYRHNQQWXXXXXXXXXXXXXXXXXXXXXXXAPLASLLELNTAEQQDPSEFNVLF 928 DPY + H CC H + T G+K + RNC DNP CL+GLGE H +GIW PS+L LGPDP+ R P DD + A P GLRNLGATCY+N+ +QC F + FRR ++ + + +HALQ +F +Q G A+ Y Q + A+ LELN QQD EF LF Sbjct: 68 DPYGIRSHVCCMDEHHPSVSLAKKAGPTTGKKHRAPRPRRNCVDNPNCLFGLGE--------------------------------------------------------HT----------------DGIWKSTPSVLADLGPDPSENLRCPS-------------DDNNN----------AIAVARPCGLRNLGATCYVNSMVQCLFMNLSFRRAVHEWEPKQTQHVNAALLAQMHALQRLFAQMQLG-------ALSYVDPQDF--------------------------AATLELNNVMQQDAHEFTKLF 253
BLAST of jgi.p|Trimin1|339409 vs. uniprot
Match: A0A484E116_BRELC (Uncharacterized protein n=2 Tax=Bremia lactucae TaxID=4779 RepID=A0A484E116_BRELC) HSP 1 Score: 78.2 bits (191), Expect = 8.160e-12 Identity = 77/290 (26.55%), Postives = 106/290 (36.55%), Query Frame = 2 Query: 320 HHACTGELT--LQDCINN--------QGKEGIWAKKPSLLTSLGPDPARARRKPLAALKGETGEAAGVDDKGDQEQESGGVLPASGALMPVGLRNLGATCYLNAQLQCWFHLIPFRRRIYNCST-EAIADERNRQVVHALQAVFGHLQCGDASVHDVAVKYRHNQQWXXXXXXXXXXXXXXXXXXXXXXXAPLASLLELNTAEQQDPSEFNVLFAQLLARCLSNGRSDAPGVQGGSSSXXXXXXXXXXXXXASEIEDLFRIDAEMTTRCCKCGYVSRRPDPSIELRLPIK 1156 HH G+ +++C+NN + GIW + G DP R R++PL A G MP GLRNLGATCYLN+ LQC + +PFR+ +Y E + D+ + ALQ +F +Q G+ S +D V AS L LN QQD EF+ L L +S P + ++ LF+ T+C KC S RP E+ L IK Sbjct: 33 HHRKIGKNVGMVRNCVNNPNCLYGLGEHYHGIWQSARLIRRLYGSDP-RERKRPLNAC---------------------------GKAMPCGLRNLGATCYLNSMLQCLYVNLPFRQAVYEWEPKEQLVDKALTLQMRALQKLFAQMQLGNESYYDPTV---------------------------------FASTLSLNRGMQQDAQEFSKLLLAHLRTIFW--QSKIP-------------------RHWNLVDKLFQGQMCYVTKCLKCQNRSMRPSSYYEISLNIK 240 The following BLAST results are available for this feature:
BLAST of jgi.p|Trimin1|339409 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90) Total hits: 25
Pagesback to topAlignments
The following features are aligned
Analyses
This mRNA is derived from or has results from the following analyses
Properties
Relationships
This mRNA is a part of the following gene feature(s):
The following polypeptide feature(s) derives from this mRNA:
The following exon feature(s) are a part of this mRNA:
The following five_prime_UTR feature(s) are a part of this mRNA:
The following CDS feature(s) are a part of this mRNA:
Sequences
The following sequences are available for this feature:
spliced messenger RNA >mRNA_14681 ID=mRNA_14681|Name=jgi.p|Trimin1|339409|organism=Tribonema minus UTEX_B_3156 |type=mRNA|length=1174bp|location=Sequence derived from alignment at Contig_95:537627..542868+ (Tribonema minus UTEX_B_3156 )|Notes=Excludes all bases but those of type(s): exon. AAGACACGCACCGGAAGAAGCGGATGTTGGCGGGGATCCATACAGGCTGCback to top protein sequence of jgi.p|Trimin1|339409 >Trimin1|339409|MIX48172_2_8 ID=Trimin1|339409|MIX48172_2_8|Name=jgi.p|Trimin1|339409|organism=Tribonema minus UTEX_B_3156 |type=polypeptide|length=368bp MADHAATKGRKQKRNCSDNPRCLYGLGEGKISGFAAKQDSNSTQTVCSMLback to top mRNA from alignment at Contig_95:537627..542868+ Legend: exonfive_prime_UTRpolypeptideCDS Hold the cursor over a type above to highlight its positions in the sequence below.>mRNA_14681 ID=mRNA_14681|Name=jgi.p|Trimin1|339409|organism=Tribonema minus UTEX_B_3156 |type=mRNA|length=5242bp|location=Sequence derived from alignment at Contig_95:537627..542868+ (Tribonema minus UTEX_B_3156 )back to top Coding sequence (CDS) from alignment at Contig_95:537627..542868+ >mRNA_14681 ID=mRNA_14681|Name=jgi.p|Trimin1|339409|organism=Tribonema minus UTEX_B_3156 |type=CDS|length=1104bp|location=Sequence derived from alignment at Contig_95:537627..542868+ (Tribonema minus UTEX_B_3156 )back to top |