mRNA_14681 (mRNA) Tribonema minus UTEX_B_3156

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
Namejgi.p|Trimin1|339409
Unique NamemRNA_14681
TypemRNA
OrganismTribonema minus UTEX_B_3156 (Tribonema minus UTEX_B_3156 )
Homology
BLAST of jgi.p|Trimin1|339409 vs. uniprot
Match: A0A835YGV5_9STRA (USP domain-containing protein n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A835YGV5_9STRA)

HSP 1 Score: 660 bits (1702), Expect = 7.990e-238
Identity = 367/367 (100.00%), Postives = 367/367 (100.00%), Query Frame = 2
Query:   71 MADHAATKGRKQKRNCSDNPRCLYGLGEGKISGFAAKQDSNSTQTVCSMLGVIVALQRVCNKSIIKSTNSIFLELQSGGFCKQHHACTGELTLQDCINNQGKEGIWAKKPSLLTSLGPDPARARRKPLAALKGETGEAAGVDDKGDQEQESGGVLPASGALMPVGLRNLGATCYLNAQLQCWFHLIPFRRRIYNCSTEAIADERNRQVVHALQAVFGHLQCGDASVHDVAVKYRHNQQWXXXXXXXXXXXXXXXXXXXXXXXAPLASLLELNTAEQQDPSEFNVLFAQLLARCLSNGRSDAPGVQGGSSSXXXXXXXXXXXXXASEIEDLFRIDAEMTTRCCKCGYVSRRPDPSIELRLPIKASLLS 1171
            MADHAATKGRKQKRNCSDNPRCLYGLGEGKISGFAAKQDSNSTQTVCSMLGVIVALQRVCNKSIIKSTNSIFLELQSGGFCKQHHACTGELTLQDCINNQGKEGIWAKKPSLLTSLGPDPARARRKPLAALKGETGEAAGVDDKGDQEQESGGVLPASGALMPVGLRNLGATCYLNAQLQCWFHLIPFRRRIYNCSTEAIADERNRQVVHALQAVFGHLQCGDASVHDVAVKYRHNQQWXXXXXXXXXXXXXXXXXXXXXXXAPLASLLELNTAEQQDPSEFNVLFAQLLARCLSNGRSDAPGVQGGSSSXXXXXXXXXXXXXASEIEDLFRIDAEMTTRCCKCGYVSRRPDPSIELRLPIKASLLS
Sbjct:    1 MADHAATKGRKQKRNCSDNPRCLYGLGEGKISGFAAKQDSNSTQTVCSMLGVIVALQRVCNKSIIKSTNSIFLELQSGGFCKQHHACTGELTLQDCINNQGKEGIWAKKPSLLTSLGPDPARARRKPLAALKGETGEAAGVDDKGDQEQESGGVLPASGALMPVGLRNLGATCYLNAQLQCWFHLIPFRRRIYNCSTEAIADERNRQVVHALQAVFGHLQCGDASVHDVAVKYRHNQQWXXXXXXXXXXXXXXXXXXXXXXXAPLASLLELNTAEQQDPSEFNVLFAQLLARCLSNGRSDAPGVQGGSSSXXXXXXXXXXXXXASEIEDLFRIDAEMTTRCCKCGYVSRRPDPSIELRLPIKASLLS 367          
BLAST of jgi.p|Trimin1|339409 vs. uniprot
Match: A0A8K1C628_PYTOL (Uncharacterized protein n=1 Tax=Pythium oligandrum TaxID=41045 RepID=A0A8K1C628_PYTOL)

HSP 1 Score: 88.6 bits (218), Expect = 3.260e-15
Identity = 76/271 (28.04%), Postives = 105/271 (38.75%), Query Frame = 2
Query:  353 DCINNQGK--EGIWAKKPSLLTSLGPDPARARRKPLAALKGETGEAAGVDDKGDQEQESGGVLPASGALMPVGLRNLGATCYLNAQLQCWFHLIPFRRRIYNCST-EAIADERNRQVVHALQAVFGHLQCGDASVHDVAVKYRHNQQWXXXXXXXXXXXXXXXXXXXXXXXAPLASLLELNTAEQQDPSEFNVLFAQLLARCLSNGRSDAPGVQGGSSSXXXXXXXXXXXXXASEIEDLFRIDAEMTTRCCKCGYVSRRPDPSIELRLPIK 1156
            +C+   G+  +GIW  K  +   LG DP   +R P  +        A V D             A+    P GLRNLGATCYLN+ LQC F + PFR+ +Y+    E   + +  Q + ALQ +FG +Q G+ +V+D                                  A  AS L LN   QQD  EFN L    +    S  R +  G                       ++ LF+      T+C +C   S RP    E+ L IK
Sbjct:   63 NCLYGLGEYQKGIWQTKKLVRRLLGDDPRELQRAPYTS--------AAVTDL------------ATTRWAPCGLRNLGATCYLNSMLQCLFMIQPFRQAVYSWEPQEKNVNPQQVQQMRALQRLFGAMQSGNKNVYD---------------------------------PAEFASTLSLNNVVQQDAQEFNKLLLAHIRGIFSQSRLEHHG---------------------ELVDQLFQGQMNYVTKCLRCNQRSSRPSSYQEISLNIK 259          
BLAST of jgi.p|Trimin1|339409 vs. uniprot
Match: G4ZAZ0_PHYSP (Uncharacterized protein n=1 Tax=Phytophthora sojae (strain P6497) TaxID=1094619 RepID=G4ZAZ0_PHYSP)

HSP 1 Score: 88.6 bits (218), Expect = 3.350e-15
Identity = 76/290 (26.21%), Postives = 107/290 (36.90%), Query Frame = 2
Query:  320 HHACTGELT--LQDCINN--------QGKEGIWAKKPSLLTSLGPDPARARRKPLAALKGETGEAAGVDDKGDQEQESGGVLPASGALMPVGLRNLGATCYLNAQLQCWFHLIPFRRRIYNCST-EAIADERNRQVVHALQAVFGHLQCGDASVHDVAVKYRHNQQWXXXXXXXXXXXXXXXXXXXXXXXAPLASLLELNTAEQQDPSEFNVLFAQLLARCLSNGRSDAPGVQGGSSSXXXXXXXXXXXXXASEIEDLFRIDAEMTTRCCKCGYVSRRPDPSIELRLPIK 1156
            HH   G     L++C +N        +  +G+W ++  LL   GPDP RARR+                               +G  MP GLRNLGATCYLN+ LQC F  +PFRR +Y     + + DE   + + ALQ +F  +Q G+ S +D                                  +  AS L LN   QQD  EF+ L    L       R  +                         ++ +F+      T+C +C   S RP    E+ L IK
Sbjct:   85 HHKKRGRAASALRNCADNPNCLYGLGERLKGVWRRESLLLRVFGPDP-RARRRGSGR---------------------------AGRPMPCGLRNLGATCYLNSMLQCLFVNLPFRRAVYGWEPKQPLTDEEQARTMRALQKLFAQMQLGNESYYD---------------------------------PSEFASTLSLNNVMQQDAQEFSKLLLTHLRAIFGQSRISS---------------------HWDLVDRIFQGQMSYVTKCLRCKNKSMRPSSYYEISLNIK 292          
BLAST of jgi.p|Trimin1|339409 vs. uniprot
Match: A0A6A3WD98_9STRA (Uncharacterized protein n=4 Tax=Phytophthora TaxID=4783 RepID=A0A6A3WD98_9STRA)

HSP 1 Score: 85.5 bits (210), Expect = 3.430e-14
Identity = 75/290 (25.86%), Postives = 106/290 (36.55%), Query Frame = 2
Query:  320 HHACTGELT--LQDCINN--------QGKEGIWAKKPSLLTSLGPDPARARRKPLAALKGETGEAAGVDDKGDQEQESGGVLPASGALMPVGLRNLGATCYLNAQLQCWFHLIPFRRRIYNCST-EAIADERNRQVVHALQAVFGHLQCGDASVHDVAVKYRHNQQWXXXXXXXXXXXXXXXXXXXXXXXAPLASLLELNTAEQQDPSEFNVLFAQLLARCLSNGRSDAPGVQGGSSSXXXXXXXXXXXXXASEIEDLFRIDAEMTTRCCKCGYVSRRPDPSIELRLPIK 1156
            HH   G+    L++C +N        + ++G+W ++  LL   GPDP RARR+                               +G   P GLRNLGATCYLN+ LQC F  +PFRR +Y     E + D+     + ALQ +F  +Q G+ S +D                                     AS L LN   QQD  EF+ L    L       R  +                         ++ +F+      T+C +C   S RP    E+ L IK
Sbjct:   34 HHRRRGKAASALRNCADNPNCLYGLGERQKGVWRRESLLLRVFGPDP-RARRRGSGR---------------------------AGRPTPCGLRNLGATCYLNSMLQCLFVNLPFRRAVYEWEPKETLVDKEQALQMRALQKLFAQMQLGNESYYD---------------------------------PTEFASTLSLNNVMQQDAQEFSKLLLTHLRTIFGQSRFSS---------------------HWDLVDRIFQGQMSYVTKCLRCKNKSMRPSSYYEISLNIK 241          
BLAST of jgi.p|Trimin1|339409 vs. uniprot
Match: A0A8K0JIF0_9TREE (Uncharacterized protein n=2 Tax=Filobasidium floriforme TaxID=5210 RepID=A0A8K0JIF0_9TREE)

HSP 1 Score: 82.8 bits (203), Expect = 2.600e-13
Identity = 64/204 (31.37%), Postives = 82/204 (40.20%), Query Frame = 2
Query:  551 LMPVGLRNLGATCYLNAQLQCWFHLIPFRRRIYNCSTEAIADERNRQVVHALQAVFGHLQCGDASVHDVAVKYRHNQQWXXXXXXXXXXXXXXXXXXXXXXXAPLASLLELNTAEQQDPSEFNVLFAQLLARCLSNGRSDAPGVQGGSSSXXXXXXXXXXXXXASEIEDLFRIDAEMTTRCCKCGYVSRRPDPSIELRLPIKAS 1162
            ++PVGLRNLGATCY NA LQ W+ ++PFR  +Y C+T+      +     AL   F  LQ    SV D                                  A L   L L   +QQD SEF+ LF  LL    S   +DA                       S I D F    +  T C  CGYVS RP+  +EL + ++ S
Sbjct:  219 VLPVGLRNLGATCYANAFLQLWYRILPFRAAVYACATDPTMPSTSPCFQLAL--TFTGLQKSARSVFD---------------------------------PAGLVEALRLEKGDQQDASEFSKLFMALLQTEFSK-NADAK--------------------VKSVINDQFEGKLKYRTECMTCGYVSERPENFLELEISMEGS 366          
BLAST of jgi.p|Trimin1|339409 vs. uniprot
Match: A0A024U320_9STRA (Uncharacterized protein n=1 Tax=Aphanomyces invadans TaxID=157072 RepID=A0A024U320_9STRA)

HSP 1 Score: 82.0 bits (201), Expect = 4.330e-13
Identity = 83/322 (25.78%), Postives = 110/322 (34.16%), Query Frame = 2
Query:    8 APEEADVGGDPYRLLGHSCCTMADH-------AATKGRK-----QKRNCSDNPRCLYGLGEGKISGFAAKQDSNSTQTVCSMLGVIVALQRVCNKSIIKSTNSIFLELQSGGFCKQHHACTGELTLQDCINNQGKEGIWAKKPSLLTSLGPDPARARRKPLAALKGETGEAAGVDDKGDQEQESGGVLPASGALMPVGLRNLGATCYLNAQLQCWFHLIPFRRRIYNCS---TEAIADERNRQVVHALQAVFGHLQCGDASVHDVAVKYRHNQQWXXXXXXXXXXXXXXXXXXXXXXXAPLASLLELNTAEQQDPSEFNVLF 928
            A   AD   DPY     +C ++ DH       +A   RK     Q+RNC DNP CL+GLGE     +A                                                                   +GIW   PS+L  LGPDP+   R P++            +D  +   E+G          P GLRNLGATCY+N+ +QC F  + FRR ++      T+ ++     Q+  ALQ +F H+Q G  S  D                                     AS LELN   QQD  EF  L 
Sbjct:   23 AVRTADAPSDPYNCSLRAC-SLEDHHPVSVAKSAPHARKPRAARQRRNCQDNPNCLFGLGE-----YA-------------------------------------------------------------------DGIWKTNPSVLADLGPDPSTMLRSPVSE-----------EDTNNNHDENGA--------RPCGLRNLGATCYVNSMVQCLFMTMSFRRAVHEWEPKETQHLSPVLLAQM-QALQRLFAHMQLGARSFAD---------------------------------PQEFASKLELNNVVQQDAHEFTKLL 218          
BLAST of jgi.p|Trimin1|339409 vs. uniprot
Match: A0A4D9CSF5_9STRA (USP domain-containing protein n=1 Tax=Nannochloropsis salina CCMP1776 TaxID=1027361 RepID=A0A4D9CSF5_9STRA)

HSP 1 Score: 80.9 bits (198), Expect = 1.170e-12
Identity = 108/410 (26.34%), Postives = 140/410 (34.15%), Query Frame = 2
Query:   38 PYR---LLGHSCCTMADHAATKGRKQKRNCSDNPRCLYGLGEGKISGFAAKQDSNSTQTVCSMLGVIVALQRVCNKSIIKSTNSIFLELQSGGFCKQHHACTGELTLQDCINNQGKEGIWAKKPSLLTSLGPDPARAR-RKPLAALKGETG--------------EAAGVDDKGDQ--------EQESGGVLPASGALM-PVGLRNLGATCYLNAQLQCWFHLIPFRRRIYNC--------STEAIADERNRQVVHALQAVFGHLQCGDASVHDVAVKYRHNQQWXXXXXXXXXXXXXXXXXXXXXXXAPLASLLELNTAEQQDPSEFNVLFAQLLARCLSNGRSDAPGVQGGSSSXXXXXXXXXXXXXASEIEDLFRIDAEMTTRCCKCGYVSRRPDPSIELRLPIKAS 1162
            PYR   L  +  CT ADH    G     NC+ NP C+YGL +GK  G  +   S   Q++     +++   +   +S+ K               +Q  A  G    + C                         R R R  ++A  G TG              E AG +  G +         QE+GG  PA   L  PVGLRNLGATCYLN  LQ  F    FR+ +Y            E    ER   ++  LQ +F H+Q G A   D     R                                 LL L+  +QQDP EF  LF   +  C       +P                     AS +  L R      T C  CG  SRR  P  EL L +  S
Sbjct:   38 PYRAGNLENYPRCTSADH----GTGGTGNCAANPHCVYGL-KGKKEGIWSTSKSLLVQSLGEDPAMLIRGWKPPVRSVYKGGTERGGRAGKTETGRQSGASMGR---KGCGGXXXXXXXXXXXXXXXXXXXXGGTRKRARTSVSAEDGSTGGAKSLECDDRAVGAEQAGAEGMGREGREQVLTKAQEAGG--PAEAYLKTPVGLRNLGATCYLNVLLQALFFNRRFRQAVYEFRPPSGPRPGEEGGRKERMVLILQELQRLFAHMQLGMAREGDPREFVR---------------------------------LLRLDRGQQQDPQEFRRLFLGKIEECFGALSPSSP-------------PSSPSPDLASMVRSLHRGRLLYLTTCLSCGTASRREGPFDELELSLLPS 391          
BLAST of jgi.p|Trimin1|339409 vs. uniprot
Match: D0MUE6_PHYIT (Ubiquitin-specific protease, putative n=2 Tax=Phytophthora infestans TaxID=4787 RepID=D0MUE6_PHYIT)

HSP 1 Score: 80.5 bits (197), Expect = 1.520e-12
Identity = 63/222 (28.38%), Postives = 86/222 (38.74%), Query Frame = 2
Query:  494 DDKGDQEQESGGVLPASGALMPVGLRNLGATCYLNAQLQCWFHLIPFRRRIYNCSTEA-IADERNRQVVHALQAVFGHLQCGDASVHDVAVKYRHNQQWXXXXXXXXXXXXXXXXXXXXXXXAPLASLLELNTAEQQDPSEFNVLFAQLLARCLSNGRSDAPGVQGGSSSXXXXXXXXXXXXXASEIEDLFRIDAEMTTRCCKCGYVSRRPDPSIELRLPIK 1156
            DD  ++E+ES       G  MP GLRNLGATCYLN+ LQC F  +PFR+ +Y    +  + D+   Q + ALQ +F  +Q G+ S +D                                     AS L LN   QQD  EF+ L    L     + R                            ++ +F+      T+C KC   S RP    E+ L IK
Sbjct:   78 DDPRERERESN----KHGKPMPCGLRNLGATCYLNSMLQCLFVNLPFRQAVYEWEPKGQLVDKEQAQQMRALQKLFAQMQLGNESYYD---------------------------------PTEFASTLSLNNVMQQDAQEFSKLLLAHLRTIFGHSRFSR---------------------HWDLVDRIFQGQMSYVTKCLKCKNKSMRPSSYYEISLNIK 241          
BLAST of jgi.p|Trimin1|339409 vs. uniprot
Match: A0A485KRV7_9STRA (Aste57867_10741 protein n=1 Tax=Aphanomyces stellatus TaxID=120398 RepID=A0A485KRV7_9STRA)

HSP 1 Score: 78.2 bits (191), Expect = 7.760e-12
Identity = 79/314 (25.16%), Postives = 102/314 (32.48%), Query Frame = 2
Query:   35 DPYRLLGHSCCTMADHAA---------TKGRKQK-----RNCSDNPRCLYGLGEGKISGFAAKQDSNSTQTVCSMLGVIVALQRVCNKSIIKSTNSIFLELQSGGFCKQHHACTGELTLQDCINNQGKEGIWAKKPSLLTSLGPDPARARRKPLAALKGETGEAAGVDDKGDQEQESGGVLPASGALMPVGLRNLGATCYLNAQLQCWFHLIPFRRRIYNCSTEAIADERNRQV--VHALQAVFGHLQCGDASVHDVAVKYRHNQQWXXXXXXXXXXXXXXXXXXXXXXXAPLASLLELNTAEQQDPSEFNVLF 928
            DPY +  H CC    H +         T G+K +     RNC DNP CL+GLGE                                                        H                 +GIW   PS+L  LGPDP+   R P              DD  +          A     P GLRNLGATCY+N+ +QC F  + FRR ++    +         +  +HALQ +F  +Q G       A+ Y   Q +                          A+ LELN   QQD  EF  LF
Sbjct:   68 DPYGIRSHVCCMDEHHPSVSLAKKAGPTTGKKHRAPRPRRNCVDNPNCLFGLGE--------------------------------------------------------HT----------------DGIWKSTPSVLADLGPDPSENLRCPS-------------DDNNN----------AIAVARPCGLRNLGATCYVNSMVQCLFMNLSFRRAVHEWEPKQTQHVNAALLAQMHALQRLFAQMQLG-------ALSYVDPQDF--------------------------AATLELNNVMQQDAHEFTKLF 253          
BLAST of jgi.p|Trimin1|339409 vs. uniprot
Match: A0A484E116_BRELC (Uncharacterized protein n=2 Tax=Bremia lactucae TaxID=4779 RepID=A0A484E116_BRELC)

HSP 1 Score: 78.2 bits (191), Expect = 8.160e-12
Identity = 77/290 (26.55%), Postives = 106/290 (36.55%), Query Frame = 2
Query:  320 HHACTGELT--LQDCINN--------QGKEGIWAKKPSLLTSLGPDPARARRKPLAALKGETGEAAGVDDKGDQEQESGGVLPASGALMPVGLRNLGATCYLNAQLQCWFHLIPFRRRIYNCST-EAIADERNRQVVHALQAVFGHLQCGDASVHDVAVKYRHNQQWXXXXXXXXXXXXXXXXXXXXXXXAPLASLLELNTAEQQDPSEFNVLFAQLLARCLSNGRSDAPGVQGGSSSXXXXXXXXXXXXXASEIEDLFRIDAEMTTRCCKCGYVSRRPDPSIELRLPIK 1156
            HH   G+    +++C+NN        +   GIW     +    G DP R R++PL A                            G  MP GLRNLGATCYLN+ LQC +  +PFR+ +Y     E + D+     + ALQ +F  +Q G+ S +D  V                                  AS L LN   QQD  EF+ L    L       +S  P                      + ++ LF+      T+C KC   S RP    E+ L IK
Sbjct:   33 HHRKIGKNVGMVRNCVNNPNCLYGLGEHYHGIWQSARLIRRLYGSDP-RERKRPLNAC---------------------------GKAMPCGLRNLGATCYLNSMLQCLYVNLPFRQAVYEWEPKEQLVDKALTLQMRALQKLFAQMQLGNESYYDPTV---------------------------------FASTLSLNRGMQQDAQEFSKLLLAHLRTIFW--QSKIP-------------------RHWNLVDKLFQGQMCYVTKCLKCQNRSMRPSSYYEISLNIK 240          
The following BLAST results are available for this feature:
BLAST of jgi.p|Trimin1|339409 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
A0A835YGV5_9STRA7.990e-238100.00USP domain-containing protein n=1 Tax=Tribonema mi... [more]
A0A8K1C628_PYTOL3.260e-1528.04Uncharacterized protein n=1 Tax=Pythium oligandrum... [more]
G4ZAZ0_PHYSP3.350e-1526.21Uncharacterized protein n=1 Tax=Phytophthora sojae... [more]
A0A6A3WD98_9STRA3.430e-1425.86Uncharacterized protein n=4 Tax=Phytophthora TaxID... [more]
A0A8K0JIF0_9TREE2.600e-1331.37Uncharacterized protein n=2 Tax=Filobasidium flori... [more]
A0A024U320_9STRA4.330e-1325.78Uncharacterized protein n=1 Tax=Aphanomyces invada... [more]
A0A4D9CSF5_9STRA1.170e-1226.34USP domain-containing protein n=1 Tax=Nannochlorop... [more]
D0MUE6_PHYIT1.520e-1228.38Ubiquitin-specific protease, putative n=2 Tax=Phyt... [more]
A0A485KRV7_9STRA7.760e-1225.16Aste57867_10741 protein n=1 Tax=Aphanomyces stella... [more]
A0A484E116_BRELC8.160e-1226.55Uncharacterized protein n=2 Tax=Bremia lactucae Ta... [more]

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
Contig_95contigContig_95:537627..542868 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Tribonema minus UTEX_B_31562021-06-17
Properties
Property NameValue
ProteomeIdTrimin1|339409|MIX48172_2_8
DescriptionUbiquitin-specific protease. Source PGD
COG categoryO
Max annot lvl121069|Pythiales
EggNOG OGsCOG5077@1|root,KOG1863@2759|Eukaryota,1MEXV@121069|Pythiales
Evalue2.18e-16
Seed ortholog42099.EPrPV00000017084
Hectar predicted targeting categoryother localisation
TranscriptId339731
TrackFilteredModels1
ProteinId339409
Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesTypePosition
jgi.p|Trimin1|339409gene_14681Tribonema minus UTEX_B_3156 geneContig_95 537627..542868 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
jgi.p|Trimin1|339409Trimin1|339409|MIX48172_2_8Tribonema minus UTEX_B_3156 polypeptideContig_95 537697..542868 +


The following exon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
exon_14681_1exon_14681_1Tribonema minus UTEX_B_3156 exonContig_95 537627..537935 +
exon_14681_2exon_14681_2Tribonema minus UTEX_B_3156 exonContig_95 538666..538727 +
exon_14681_3exon_14681_3Tribonema minus UTEX_B_3156 exonContig_95 538902..539044 +
exon_14681_4exon_14681_4Tribonema minus UTEX_B_3156 exonContig_95 540149..540321 +
exon_14681_5exon_14681_5Tribonema minus UTEX_B_3156 exonContig_95 542117..542215 +
exon_14681_6exon_14681_6Tribonema minus UTEX_B_3156 exonContig_95 542481..542868 +


The following five_prime_UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
UTR5_14681UTR5_14681Tribonema minus UTEX_B_3156 five_prime_UTRContig_95 537627..537696 +


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
CDS_14681CDS_14681Tribonema minus UTEX_B_3156 CDSContig_95 537697..537935 +


Sequences
The following sequences are available for this feature:

spliced messenger RNA

>mRNA_14681 ID=mRNA_14681|Name=jgi.p|Trimin1|339409|organism=Tribonema minus UTEX_B_3156 |type=mRNA|length=1174bp|location=Sequence derived from alignment at Contig_95:537627..542868+ (Tribonema minus UTEX_B_3156 )|Notes=Excludes all bases but those of type(s): exon.  
AAGACACGCACCGGAAGAAGCGGATGTTGGCGGGGATCCATACAGGCTGC
TGGGGCATAGCTGTTGTACGATGGCCGATCATGCTGCTACGAAAGGGAGG
AAGCAGAAACGCAACTGCAGCGACAACCCTCGGTGCCTGTACGGCCTGGG
CGAAGGCAAGATTTCAGGATTTGCCGCCAAGCAGGATTCAAATTCTACCC
AGACAGTGTGCTCTATGCTCGGTGTCATTGTAGCATTGCAAAGAGTTTGC
AACAAGTCCATCATCAAATCGACCAACAGCATATTCCTCGAACTGCAAAG
TGGCGGATTCTGCAAGCAGCATCACGCTTGTACGGGCGAGCTAACCCTGC
AAGACTGCATCAACAATCAAGGCAAGGAAGGCATCTGGGCGAAGAAGCCC
TCACTGCTGACATCTCTGGGGCCAGACCCGGCTCGGGCGCGGCGCAAGCC
ATTGGCTGCACTGAAGGGGGAAACAGGGGAAGCGGCGGGGGTGGACGACA
AGGGGGACCAGGAGCAGGAGAGCGGCGGCGTGCTGCCTGCCAGCGGAGCG
CTGATGCCTGTAGGGCTCCGCAACCTGGGCGCGACGTGCTACCTCAACGC
TCAGCTGCAGTGCTGGTTCCACCTCATACCATTCCGGCGCCGCATCTACA
ACTGCTCCACAGAGGCCATTGCGGATGAGAGAAACAGGCAGGTCGTTCAC
GCGCTGCAGGCAGTCTTTGGCCACCTACAGTGCGGCGACGCCTCGGTCCA
CGACGTGGCTGTAAAGTATCGCCATAATCAGCAGTGGCAGGTCGTTCACG
CACTTCAAGCGGTGTTTGGCCACCTCCAATGCGGCGACGCATCGGTCCAT
GACGTTGCACCCCTGGCCAGCCTGCTCGAGCTCAACACCGCCGAGCAGCA
GGACCCCTCGGAGTTCAACGTCCTCTTCGCGCAGCTGCTCGCGCGCTGCC
TCAGTAACGGCCGATCCGACGCGCCGGGGGTACAGGGCGGCAGCAGCAGC
GGCAGCGGCAGCAGCGGCGGCGGCGGCGGCAGCGGCAGCGCGAGCGAGAT
TGAGGATCTGTTCAGGATAGACGCGGAGATGACAACGCGGTGCTGCAAGT
GTGGCTACGTGTCACGGCGGCCGGACCCTTCCATTGAGCTGCGACTGCCC
ATCAAGGCAAGCCTGTTGTCGTGA
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protein sequence of jgi.p|Trimin1|339409

>Trimin1|339409|MIX48172_2_8 ID=Trimin1|339409|MIX48172_2_8|Name=jgi.p|Trimin1|339409|organism=Tribonema minus UTEX_B_3156 |type=polypeptide|length=368bp
MADHAATKGRKQKRNCSDNPRCLYGLGEGKISGFAAKQDSNSTQTVCSML
GVIVALQRVCNKSIIKSTNSIFLELQSGGFCKQHHACTGELTLQDCINNQ
GKEGIWAKKPSLLTSLGPDPARARRKPLAALKGETGEAAGVDDKGDQEQE
SGGVLPASGALMPVGLRNLGATCYLNAQLQCWFHLIPFRRRIYNCSTEAI
ADERNRQVVHALQAVFGHLQCGDASVHDVAVKYRHNQQWQVVHALQAVFG
HLQCGDASVHDVAPLASLLELNTAEQQDPSEFNVLFAQLLARCLSNGRSD
APGVQGGSSSGSGSSGGGGGSGSASEIEDLFRIDAEMTTRCCKCGYVSRR
PDPSIELRLPIKASLLS*
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mRNA from alignment at Contig_95:537627..542868+

Legend: exonfive_prime_UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_14681 ID=mRNA_14681|Name=jgi.p|Trimin1|339409|organism=Tribonema minus UTEX_B_3156 |type=mRNA|length=5242bp|location=Sequence derived from alignment at Contig_95:537627..542868+ (Tribonema minus UTEX_B_3156 )
AAGACACGCACCGGAAGAAGCGGATGTTGGCGGGGATCCATACAGGCTGC TGGGGCATAGCTGTTGTACGATGGCCGATCATGCTGCTACGAAAGGGAGG AAGCAGAAACGCAACTGCAGCGACAACCCTCGGTGCCTGTACGGCCTGGG CGAAGGCAAGATTTCAGGATTTGCCGCCAAGCAGGATTCAAATTCTACCC AGACAGTGTGCTCTATGCTCGGTGTCATTGTAGCATTGCAAAGAGTTTGC AACAAGTCCATCATCAAATCGACCAACAGCATATTCCTCGAACTGCAAAG TGGCGGATTGTAAGTGCAGCTTTGACACAGACATCGTCAATGTTTATACA AATGACGAATGATTGATCACCCGTATTGAATTTATTCAAATGCCACTTCT GCAGCAGTTTGCATGCGAGCTGATGGCCTCGTGATGTTGTTCTCCTGATG CGCAACACCCGCGTACGGAGAAAGTTTACATGGTGTTGTGGACATGACTC ATTGGGGAGCAGGCCACCTGTTGCCCGCAGTAGCACCCTCACAGCATGTA GTCAGCGGCAACATGGCAGACTTAACATGGACCATGATGTCGCTTACAAG TACACCCTTGGGCAGCAGTGTTTGGTCATGCGCATTGAGACACTCTCAAG GTGTTCACAAAGCCTCATGTAGAGTCTGGTCGCAAGTCCATGAACATCCA CCATCAGGGCTTTTTCGCGCCCTGAGCGAGAATTAATGAAAAGGACACCC TTGGTGGTGGTCAGATTGAACCCTGCGCTGAACCATGTGGACCATGTTGC CATAGGTGACACCTGTCACTTTCCTACCACTTCGCGTACCTACAACGAGG TCCGGGACTGAATGAGCAGTACAGACGCTCATCGTACTTAGGAAGACAAC AATTCATTTTTTCAATCATGGCCGTGGAAGTCACTCCCACATGCTGTTTT GCCAGCACTGAGGACTATGACGCGGCGTTCTTCTGTGGCAATTCTTGTAG CTAGCTTGATGCATCCCTGCATGATGACAATTGCGGCAGCTGCAAGCAGC ATCACGCTTGTACGGGCGAGCTAACCCTGCAAGACTGCATCAACAATCAA GGTCAAGACATTGGAACAATGGATTGACCTGGTTGTTATGCACTGCTTCA GGCTCTTTCCCGCCTGCTTTCAAAGAGCGTCAGTTCTCAGCTGTGAATTT GTCGCTGCATTGCGCTGCTAGGGCCGCCATTTCTCACTTGTGATGTTGTC ACTGCACTGTTTTGCACTTGTCCAGGCAAGGAAGGCATCTGGGCGAAGAA GCCCTCACTGCTGACATCTCTGGGGCCAGACCCGGCTCGGGCGCGGCGCA AGCCATTGGCTGCACTGAAGGGGGAAACAGGGGAAGCGGCGGGGGTGGAC GACAAGGGGGACCAGGAGGTAGGTACCTATCAAATTATACCTTTTTACAA TGCTGAATGGGGGTTTGTGGCCAAGGCAATAACAAATGTTCTGATAACTG CACAATATACACCGCAGTCATTATCTGCGCTCAAGGGGGAAGCAGGGGAA GCGGCGGCAGGGTAGGAGGAGGGAAAGCAAGACTTAGGCATGTATTTCAC ATCCCACTTGAGGTGTAGCTCACGGAGTGTGCTCTGCAGCATTGAGGTGG TGATGTCATGTATGCAGGCTGAAGCGTACAGAAAGGCAGCGAGAAGCGGC GAGCAAGGCAGCCAGCATTGACGATTCACTAGATGGCGGCGAGTTTATTA TCTCACTGCAGCATGCCATCGCCACTGCAGATAAAACCTTGTGAGGGACA CCACCGCTGCATGGTAATCGTCGCTGCAAATTTCAGACAGTGCTCAGCAG TGAGCAGAGCGCTGATGCCTGTTGAGCTGTGACGCGCGCTAGCCGCCGCT GCGTGCACTGCTGCTCCTTCGCCATGCACTTGACGTCTGTTTGTGTAGTT GAAGTACGTGTGCACTCATCGCCGCACGCCATACCAGCTTCAGGTGAAAG CCGGTGGTGAACCACAGTAACGAGAGAGGGGAGGCGCGCTGCCTACTAGC AAAGCACTGATGCCTGCTTAACTTCAACCAGCCACAGCTGCGCATCCACA TCTATCCACGATTGATTATACTGTTCATACTTGCGCACTGCTGTGTGTCA TAGCGGCTGCAGAACAAAGCCGACGGTGAACGACAGACACAAGAGCTGCG AGAGAGCTGCGAGGCATGCCTGTTAGCGCAGTGCTGATGCCTGTAGGTCT TCAACTAACTACCTGCCACTTGTGTGTCCATTCACTGCTGCTCCATCCTG TACGCAAGTATACATCACCCAGATCTACTCACTGCACCGCGTTATTGCTC CTGCTGAAGCAGGAGAGCGGCGGCGTGCTGCCTAACGGAGCACTGATGCC AGTAGGGCTTCAACTACTACCTGCCACTTGTGTGTCGATTGTTTGCTGCT GCTTCATCAAGTACGCAAATATTACGTTCGTACAGATCTACTCACTGCAC CGCGATATTGCCCCTGCTGCAGCAGGAGAGCGGCGGCGTGCTGCCTGCCA GCGGAGCGCTGATGCCTGTAGGGCTCCGCAACCTGGGCGCGACGTGCTAC CTCAACGCTCAGCTGCAGTGCTGGTTCCACCTCATACCATTCCGGCGCCG CATCTACAACTGCTCCACAGAGGCCATTGCGGATGAGAGAAACAGGTGCG CACTGCCATACTTCAAGTATGCAACTTGAAGTTTATGAGTAGATTTGAAG TTTGAATTGGCCTGCCTCACGGAGGCCATCACGGATGAGAGAAACAGGTA CGCTTGCGATACTTCAATATACGTACATCACCTGTTGACGTAACCACCGT AGTTCAAAACTACTGGTTTTGAAGTTTGGACTAAACTGCAGCCTCGACGA GGTGCATATAGAACTGCTCCATGGAGGACATTGTGGATGAGAGGAATAGG TGCACTGCATACCTCAAGTATGCAAGCTTGAACTTTATGGGTAGATTTGA AGTTTGAACTGACAGCTCCAGCCCTTATCTGACAACTGCTCCACGGTGGC CATTGCGGATGGGAGAAACGGGTACGCAGCCATACTTAGGATATATGTGT ACATCAGCTTTAAAGAGGCATCGTAGTTATTTACTACTACTTAAGTAGTT TTGAAGTTTGGACTAAATTGCTGCAGTCTATCAGGTGCATCTACAACTGC CCCACGGAGGCCATTGCGGATGAGAGAAGCAGCACTGCAAGCTGTTGAAT GTATTAGTGGATTTGAAGATTGAATTGAACTGCTCCACGGAGGCTATCGC AAATGAGATAAACAGGTGGACTGCCGTACTTCAAGTACCTACATTCAAAC ATGCGCTACAAAAGTAAATGCTGTAGTTTTAAAGTTCGAACCGCTGCAGC CTCCATCAGTTGCGTTGACAACTCCTCAGTGGAAGCATTGGATGAGAGAA ATGCGTGCGCTGCCAGGCCATACTTCGAAGTATTCTTGAAGTTTCTGCGT ATAATGTCTCGAACTTCGGGCCGTCGCCACCAGGTTTAGTGTCACCTGCT TCGCAAAAGCCATTGTGGTCGAGAGAAACAGGTGCACTGCACTCACGAAT TACTTCAAGTACATGAAGTTCACAGCGCCCCGCAATATAATCTCATGTGC AAGTCCAGCTCCGCGGTGAGCGGCAGTAGCTTCACTCAGGTTTGCTGTGA ACTTGACTGCGAGGATTTTCAGGGATGAGTTGATTTGCTGAAACTTCCGA ATGCAATACGTACCATGTACTCCATACGGTACAGTGAAGACTACGTGTTG CATGAAATTTCCCAATGTCGGCACTCTCGAGGCTCGTATGTGCCTCATGT CGATCATGCATTGCGCGACATGGTGTGCAACCTGCTTTGAAGTCATTCGT GACATAATTCAGTAAGTAATCACGAGATGACAACTATTCCCTCCTTCACA TCCCTCATAGTGTTGCTGGCAGGTCGTTCATTCGCCGCAGGCGGTGTTCG GCTACCTCTAGTGCACGACGCTGCTTTGAGGTGTTGCCACCATACGTGGA AGAAGTATCAGCACTCGCAGGTGATTCTAAGGGAACATCAAGTGACATCA AGTGACATTCTTTGCCTCTCCTATTCTGTCACCTTGCATGTAACAGGCAT GTCGCTCACGCCTTTCAGGCGGTGTCATGCTACGTGCAGTTCGGTGCCGC CTCCGTGCGCAATGTCGCTGCGCAGGTTTGCCATTATACCAGCACTCACA TTTCTTCTCAATGAACCATTTCACGACATTCTTTCCCTCTCCTGTTCTTT CCACCTTGCATTCAACAGGCAGGTCGTTCACGCGCTGCAGGCAGTCTTTG GCCACCTACAGTGCGGCGACGCCTCGGTCCACGACGCGGCTGTAAAGTAT CGCCATAATCAGCAGTCTTTTAATACGGCTCTCATGGATCACCAAATGAC ATACTTTCTCTCTCCTCTCTTTTTACCTTGCACATGACAGGCAGGTCGTT CACGCGCTGCAGGCAGTCTTTGGCCACCTACAGTGCGGCGACGCCTCGGT CCACGACGTGGCTGTAAAGTATCGCCATAATCAGCAGTGGTAACCTTTTA ATACGGCTCTCATGGATCACCAAATGACATACTTTCTCTCTCCTCTCTTT TTACCTTGCACATGACAGGCAGGTCGTTCACGCGCTGCAGGCAGTCTTTG GCCACCTACAGTGCGGCGACGCCTCGGTGCACGATGCCACTTCCAAGTAC CAACATCATAATCAGCAGTGTGAGCACCTCGTGATAAAATAACGGTAATG AATCACCAAACAACATTCTTTCCCTCTCCTCTTTTCGTACCTTGCACATG ACAGGCAGGTCGTTCACGCACTTCAAGCGGTGTTTGGCCACCTCCAATGC GGCGACGCATCGGTCCATGACGTTGCACCCCTGGCCAGCCTGCTCGAGCT CAACACCGCCGAGCAGCAGGACCCCTCGGAGTTCAACGTCCTCTTCGCGC AGCTGCTCGCGCGCTGCCTCAGTAACGGCCGATCCGACGCGCCGGGGGTA CAGGGCGGCAGCAGCAGCGGCAGCGGCAGCAGCGGCGGCGGCGGCGGCAG CGGCAGCGCGAGCGAGATTGAGGATCTGTTCAGGATAGACGCGGAGATGA CAACGCGGTGCTGCAAGTGTGGCTACGTGTCACGGCGGCCGGACCCTTCC ATTGAGCTGCGACTGCCCATCAAGGCAAGCCTGTTGTCGTGA
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Coding sequence (CDS) from alignment at Contig_95:537627..542868+

>mRNA_14681 ID=mRNA_14681|Name=jgi.p|Trimin1|339409|organism=Tribonema minus UTEX_B_3156 |type=CDS|length=1104bp|location=Sequence derived from alignment at Contig_95:537627..542868+ (Tribonema minus UTEX_B_3156 )
ATGGCCGATCATGCTGCTACGAAAGGGAGGAAGCAGAAACGCAACTGCAG
CGACAACCCTCGGTGCCTGTACGGCCTGGGCGAAGGCAAGATTTCAGGAT
TTGCCGCCAAGCAGGATTCAAATTCTACCCAGACAGTGTGCTCTATGCTC
GGTGTCATTGTAGCATTGCAAAGAGTTTGCAACAAGTCCATCATCAAATC
GACCAACAGCATATTCCTCGAACTGCAAAGTGGCGGATTCTGCAAGCAGC
ATCACGCTTGTACGGGCGAGCTAACCCTGCAAGACTGCATCAACAATCAA
GGCAAGGAAGGCATCTGGGCGAAGAAGCCCTCACTGCTGACATCTCTGGG
GCCAGACCCGGCTCGGGCGCGGCGCAAGCCATTGGCTGCACTGAAGGGGG
AAACAGGGGAAGCGGCGGGGGTGGACGACAAGGGGGACCAGGAGCAGGAG
AGCGGCGGCGTGCTGCCTGCCAGCGGAGCGCTGATGCCTGTAGGGCTCCG
CAACCTGGGCGCGACGTGCTACCTCAACGCTCAGCTGCAGTGCTGGTTCC
ACCTCATACCATTCCGGCGCCGCATCTACAACTGCTCCACAGAGGCCATT
GCGGATGAGAGAAACAGGCAGGTCGTTCACGCGCTGCAGGCAGTCTTTGG
CCACCTACAGTGCGGCGACGCCTCGGTCCACGACGTGGCTGTAAAGTATC
GCCATAATCAGCAGTGGCAGGTCGTTCACGCACTTCAAGCGGTGTTTGGC
CACCTCCAATGCGGCGACGCATCGGTCCATGACGTTGCACCCCTGGCCAG
CCTGCTCGAGCTCAACACCGCCGAGCAGCAGGACCCCTCGGAGTTCAACG
TCCTCTTCGCGCAGCTGCTCGCGCGCTGCCTCAGTAACGGCCGATCCGAC
GCGCCGGGGGTACAGGGCGGCAGCAGCAGCGGCAGCGGCAGCAGCGGCGG
CGGCGGCGGCAGCGGCAGCGCGAGCGAGATTGAGGATCTGTTCAGGATAG
ACGCGGAGATGACAACGCGGTGCTGCAAGTGTGGCTACGTGTCACGGCGG
CCGGACCCTTCCATTGAGCTGCGACTGCCCATCAAGGCAAGCCTGTTGTC
GTGA
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