mRNA_14624 (mRNA) Tribonema minus UTEX_B_3156
Overview
Homology
BLAST of jgi.p|Trimin1|147102 vs. uniprot
Match: A0A835YHT3_9STRA (Uncharacterized protein (Fragment) n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A835YHT3_9STRA) HSP 1 Score: 430 bits (1105), Expect = 2.100e-152 Identity = 213/213 (100.00%), Postives = 213/213 (100.00%), Query Frame = 1 Query: 1 MNPHLVARAQELCVANDREELKALFANYYEHFGAIPLDDSDVTDSQAINDLVRENVILNGVTFFGHSQQFLKALRRVVDVWASSLEYTGALTASEISQRVLRKASRTTSGSDSYFTVQQLFSADENYLLKPRGFALPPIEVDVYLSDGCIHSKVTCTNLYGLYSMDDIDCPTDGVLKPPKPWLSLDTTVVEETNHNTCQNVRHLEIIIPEDAD 639 MNPHLVARAQELCVANDREELKALFANYYEHFGAIPLDDSDVTDSQAINDLVRENVILNGVTFFGHSQQFLKALRRVVDVWASSLEYTGALTASEISQRVLRKASRTTSGSDSYFTVQQLFSADENYLLKPRGFALPPIEVDVYLSDGCIHSKVTCTNLYGLYSMDDIDCPTDGVLKPPKPWLSLDTTVVEETNHNTCQNVRHLEIIIPEDAD Sbjct: 1 MNPHLVARAQELCVANDREELKALFANYYEHFGAIPLDDSDVTDSQAINDLVRENVILNGVTFFGHSQQFLKALRRVVDVWASSLEYTGALTASEISQRVLRKASRTTSGSDSYFTVQQLFSADENYLLKPRGFALPPIEVDVYLSDGCIHSKVTCTNLYGLYSMDDIDCPTDGVLKPPKPWLSLDTTVVEETNHNTCQNVRHLEIIIPEDAD 213
BLAST of jgi.p|Trimin1|147102 vs. uniprot
Match: A0A6H5KCI5_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KCI5_9PHAE) HSP 1 Score: 202 bits (515), Expect = 7.710e-61 Identity = 110/212 (51.89%), Postives = 147/212 (69.34%), Query Frame = 1 Query: 1 MNPHLVARAQELCVANDREELKALFANYYEHFGAIPLDDSDVTDSQAINDLVRENVILNGVTFF-GHSQQFLKALRRVVDVWASSLEYTGALTASEISQRVLRKASRTTSGSDSYFTVQQLFSADENYLLKPRGFALPPIEVDVYLSDGCIHSKVTCTNLYGLYSMDDIDCPTDG-VLKPPKPWLSLDTTVVEETNHNTCQNVRHLEIIIPE 630 MN ++ Q LC +R+ + +F N+ EHF IPL+DS+V QAINDL+RENVILNGV FF GH + FL++LR+VV++ + S Y G T SEI +RVL KASRTTSGSDSYFTVQQLF+ + +YLLK R P I V+V+L D IHS V C N YGL+S+D+I+ + + P+ WL LDT VVE+T++ T +NVR+L + P+ Sbjct: 1 MNQTVIETVQTLCRKGNRDSVLTVFQNFPEHFSCIPLNDSNVESKQAINDLLRENVILNGVKFFSGHGELFLESLRQVVEILSKSPAYKGHRTGSEIVERVLCKASRTTSGSDSYFTVQQLFT-NSDYLLKKRSERPPAINVEVFLVDNSIHSVVACANYYGLFSLDEIEAESQTFAVHTPRAWLRLDTMVVEKTDYLTGRNVRYLRVDTPD 211
BLAST of jgi.p|Trimin1|147102 vs. uniprot
Match: A0A835YWA6_9STRA (Uncharacterized protein n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A835YWA6_9STRA) HSP 1 Score: 121 bits (303), Expect = 3.810e-30 Identity = 69/163 (42.33%), Postives = 95/163 (58.28%), Query Frame = 1 Query: 169 ILNGVTFFGHSQQFLKALRRVVDVWASSLEYTGALTASEISQRVLRKASRTTSGSDSYFTVQQLFSADENYLLKPRGFALPPIEVDVYLSDGCIHSKVTCTNLYGLYSMDDIDCPTDGVLKPPKPWLSLDTTVVEETNHNTC--------QNVRHLEIIIPED 633 +LNG G +F +AL +++ + Y G + S+++ ++RKASRT SG DSY V QL+ ADENYLLKPR LPP+EV+V L D CI SKV N LY M D++ ++ +PWL DTTV E TNH+ ++R+L + IPED Sbjct: 1 MLNGTLAGGQRCEFTEALLKLLKRLMARPRYQGECSPSDMACAIMRKASRTASGCDSYHFVHQLYGADENYLLKPRAVTLPPVEVEVSLVDSCIISKVITRNPLALYKMADLENSAAEAVQV-EPWLYFDTTVTERTNHDARGGSSSSGNDSIRYLSVAIPED 162
BLAST of jgi.p|Trimin1|147102 vs. uniprot
Match: A0A7S2IA15_9STRA (Hypothetical protein n=1 Tax=Helicotheca tamesis TaxID=374047 RepID=A0A7S2IA15_9STRA) HSP 1 Score: 104 bits (260), Expect = 4.530e-24 Identity = 68/186 (36.56%), Postives = 100/186 (53.76%), Query Frame = 1 Query: 103 IPLDDSDVTD-SQAINDLVRENVILNGVTF------FGHSQQFLKALRRVVDVWASSLEYTGALTASE-ISQRVLRKASRTTSGSDSYFTVQQLFSADENYLLKPRGF--ALPPIEVDVYLSDGCIHSKVTCTNLYGLYSMDDIDCPTDGVLKPPKPWLSLDTTVVEETNHNTCQNVRHLEIIIPE 630 IPLD S + S A+ ++ +E VILNGV F FG + FL LR VD S E G L S + + ++ + +RT S +DSYF + L + + L+ + ALPPIE++V+ S GC+H+ + N+YGLY D D KPW+S+D V E N ++VR+L + IP+ Sbjct: 51 IPLDPSQPGEMSAALAEVSKERVILNGVPFLHGAARFGGGEDFLFMLREAVD---SLCESEGLLCNSRSVYEGIVTRMARTASAADSYFKLNSLLGSPDLMLMPSQAASSALPPIELEVFASSGCLHASFSTANVYGLYRKADFALQADINAGTNKPWISIDAIVEERVNFGNGESVRYLNVKIPD 233
BLAST of jgi.p|Trimin1|147102 vs. uniprot
Match: T0SI70_SAPDV (Uncharacterized protein n=1 Tax=Saprolegnia diclina (strain VS20) TaxID=1156394 RepID=T0SI70_SAPDV) HSP 1 Score: 99.4 bits (246), Expect = 4.860e-22 Identity = 67/214 (31.31%), Postives = 114/214 (53.27%), Query Frame = 1 Query: 1 MNPHLVARAQELCVANDREELKALFANYYEHFGAIPLDDS-DVTDSQAINDLVRENVILNGVTFFG--HSQQFLKALRRVVDVWASSLEYTGALTASEISQRVLRKASRTTSGSDSYFTVQQLFSADENYLLKPRGFALPPIEVDVYLSD-GCIHSKVTCTNLYGLYSMDDIDCPTDGVLKPPKPWLSLDTTVVEETNHNTCQNVRHLEIIIPE 630 ++P LV ++ V++ + + + ++ G +PL DV +QA D VRE+++LNGV F G ++ F+ A++R+V + + E S R++R+ SRT SG+DSYF +Q+LF A L+KPR PP+++ + G +++ +NLYG+Y DDI+ P + +DT +VE + T + R L + PE Sbjct: 14 LDPRLVQAVRKRVVSSRKADFIEVLGSHLLR-GRLPLSSHCDVDTAQAFRDAVREDIMLNGVRFVGDHRTEAFVAAVKRIVQKFLPKDQCL------EASDRIMRRCSRTHSGTDSYFALQELFGAT-GLLIKPRPGGTPPLDIRLGRDKTGSYKCRISASNLYGIYRHDDIEQLLTHNEHTLAPLVEIDTVIVEAMSFATGETTRTLSLRTPE 219
BLAST of jgi.p|Trimin1|147102 vs. uniprot
Match: A0A1V9YR98_9STRA (Uncharacterized protein n=1 Tax=Achlya hypogyna TaxID=1202772 RepID=A0A1V9YR98_9STRA) HSP 1 Score: 98.6 bits (244), Expect = 9.150e-22 Identity = 69/214 (32.24%), Postives = 114/214 (53.27%), Query Frame = 1 Query: 1 MNPHLVARAQELCVANDREE-LKALFANYYEHFGAIPLDDSDVTDSQAINDLVRENVILNGVTFFG--HSQQFLKALRRVVDVWASSLEYTGALTASEISQRVLRKASRTTSGSDSYFTVQQLFSADENYLLKPRGFALPPIEVDVYLSD-GCIHSKVTCTNLYGLYSMDDIDCPTDGVLKPPKPWLSLDTTVVEETNHNTCQNVRHLEIIIPE 630 ++PHLVA ++ + + + + AL + A+ D +V QA D VRE+++LNGV F G ++ F+ A++R+V + L AL +S RV+R+ SRT SG+DSYF +Q+LF + +L+KPR PP+++ + G +++ NLY +Y DI+ +P L +DT +VE + + RHL + PE Sbjct: 12 LDPHLVATVRKRVASGRKADFVDALHSRLLSQRLALS-SDCEVDTVQAFRDAVREDIMLNGVRFVGDHRTEAFVAAVKRIVQKF---LPQDKALA---VSDRVMRRCSRTHSGTDSYFALQELFGGPD-FLIKPRQGGTPPLDIALGRDKTGAFKCRISAANLYAIYRNADIELLLTQQGHTLEPLLEVDTVIVEAIDFSAGTTTRHLSMRTPE 217
BLAST of jgi.p|Trimin1|147102 vs. uniprot
Match: A0A7S3UYC6_HETAK (Hypothetical protein n=1 Tax=Heterosigma akashiwo TaxID=2829 RepID=A0A7S3UYC6_HETAK) HSP 1 Score: 100 bits (248), Expect = 1.420e-21 Identity = 62/153 (40.52%), Postives = 82/153 (53.59%), Query Frame = 1 Query: 118 SDVTDSQAINDLVRENVILNGVTFFGHSQQFLKALRRVVDVWASSLEYTGALTASEISQRVLRKASRTTSGSDSYFTVQQLFSADENYLLKPRGFALPPIEVDVYLSD-GCIHSKVTCTNLYGLYSMDDIDCPTDGVLKPPKPWLSLDTTVVE 573 ++V QA D+ RE VI NGV FFG+ ++F+ L V L + A EI++ +L KASRT SG DSYF V +LF +LLKPR PP+ VD+ + G + + NLYGLY ID + + P PWL LD V E Sbjct: 52 AEVEPDQAKRDMQREKVIFNGVNFFGYQERFVPFLESYVRRLVKKLRWPPQR-AQEITEAILEKASRTASGYDSYFFVNELFEVP-GHLLKPRFEPTPPVRVDLVAAPRGALLCHIASKNLYGLYDFTHIDDTSRADDEHPSPWLRLDAEVFE 202
BLAST of jgi.p|Trimin1|147102 vs. uniprot
Match: W4H072_9STRA (Uncharacterized protein n=1 Tax=Aphanomyces astaci TaxID=112090 RepID=W4H072_9STRA) HSP 1 Score: 98.6 bits (244), Expect = 1.530e-21 Identity = 66/175 (37.71%), Postives = 99/175 (56.57%), Query Frame = 1 Query: 121 DVTDSQAINDLVRENVILNGVTFFG--HSQQFLKALRRVVDVWASSLEYTGALTASEISQRVLRKASRTTSGSDSYFTVQQLFSADENYLLKPRGFALPPIEVDVYLS---DGCIHSKVTCTNLYGLYSMDDIDCPTD-GVLKPPKPWLSLDTTVVEETNHNTCQNVRHLEIIIP 627 DV +QA D VRE+++LNGV F G ++ F+ A++R+V+ + S+ + + +S RV+R SRT SG+DSYF +Q+LF + L+KPR PP +DV L G + ++ NLYGLY DDI+ G P++ +DT +VEE N T R+L + P Sbjct: 74 DVDTAQAFRDAVREDIVLNGVQFVGDHRTEAFVAAVKRIVEKYISTPKKS-----LHVSDRVMRSCSRTHSGADSYFALQELFGHPD-LLIKPRQDPPPP-PLDVTLGVDRKGTLKCRICAANLYGLYRHDDIEQEVVYGRTAVVPPFVLVDTVIVEEINFTTDVATRYLSVRSP 241
BLAST of jgi.p|Trimin1|147102 vs. uniprot
Match: A0A6V2LGI6_9STRA (Hypothetical protein n=1 Tax=Ditylum brightwellii TaxID=49249 RepID=A0A6V2LGI6_9STRA) HSP 1 Score: 97.1 bits (240), Expect = 4.910e-21 Identity = 65/191 (34.03%), Postives = 98/191 (51.31%), Query Frame = 1 Query: 103 IPLDDSDVTD-SQAINDLVRENVILNGVTF------FGHSQQFLKALRRVVDVWASSLEYTGALTASE-ISQRVLRKASRTTSGSDSYFTVQQLFSADENYLLKPRGFA---LPPIEVDVYLSDGCIHSKVTCTNLYGLYSMDDID----CPTDGVLKPPKPWLSLDTTVVEETNHNTCQNVRHLEIIIPE 630 +PLD S + S AI+++ +E +ILNGV F +G + FL LR VVD G L + ++ + +RT S +DSYF + L + + L+ + + LPPIEV+V+ S GC+H+ + N+YGLY D+ D KPW+S++ V E N + VRHL + IPE Sbjct: 41 VPLDPSQPGEISAAISEVAKEPIILNGVPFLRGAARYGGGEDFLLMLREVVDTLCKG---EGMLCHPRAVYDGIVTRMARTASAADSYFKLNSLLGSPDLMLMPAQNASSKILPPIEVEVFASAGCVHASFSTANVYGLYRKADLKDFAGLQADINAGTSKPWISINAVVEERVNFENGECVRHLSVKIPE 228
BLAST of jgi.p|Trimin1|147102 vs. uniprot
Match: A0A024U3Z4_9STRA (Uncharacterized protein n=1 Tax=Aphanomyces invadans TaxID=157072 RepID=A0A024U3Z4_9STRA) HSP 1 Score: 93.6 bits (231), Expect = 1.030e-19 Identity = 63/175 (36.00%), Postives = 99/175 (56.57%), Query Frame = 1 Query: 121 DVTDSQAINDLVRENVILNGVTFFG--HSQQFLKALRRVVDVWASSLEYTGALTASEISQRVLRKASRTTSGSDSYFTVQQLFSADENYLLKPRGFALPP-IEVDVYLS-DGCIHSKVTCTNLYGLYSMDDIDCPTD-GVLKPPKPWLSLDTTVVEETNHNTCQNVRHLEIIIPE 630 +V +QA D VRE+++LNGV F G ++ F+ A++R+V+ + T A +S RV+R SRT SG+D+YF +Q+LF + L+KPR PP +EV + + G + ++ NL+GLY DDI+ G P++ +DT +VEE + T R+L + PE Sbjct: 66 EVNTAQAFRDAVREDIVLNGVQFVGDHRTEAFVAAVKRIVEKFV-----TKPRKALHVSDRVMRSCSRTHSGADAYFALQELFGHPD-LLIKPRSDPPPPPLEVTLGVDRKGSLKCRICAANLFGLYRHDDIEREVMLGRTAVVPPFVLVDTVIVEEIDFATDMAKRYLSVRSPE 234 The following BLAST results are available for this feature:
BLAST of jgi.p|Trimin1|147102 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90) Total hits: 16
Pagesback to topAlignments
The following features are aligned
Analyses
This mRNA is derived from or has results from the following analyses
Properties
Relationships
This mRNA is a part of the following gene feature(s):
The following exon feature(s) are a part of this mRNA:
The following CDS feature(s) are a part of this mRNA:
The following polypeptide feature(s) derives from this mRNA:
Sequences
The following sequences are available for this feature:
spliced messenger RNA >mRNA_14624 ID=mRNA_14624|Name=jgi.p|Trimin1|147102|organism=Tribonema minus UTEX_B_3156 |type=mRNA|length=639bp|location=Sequence derived from alignment at Contig_92:570577..573359+ (Tribonema minus UTEX_B_3156 )|Notes=Excludes all bases but those of type(s): exon. ATGAATCCGCACCTGGTGGCCAGGGCTCAGGAGCTGTGCGTGGCCAACGAback to top protein sequence of jgi.p|Trimin1|147102 >Trimin1|147102|gw1.92.74.1 ID=Trimin1|147102|gw1.92.74.1|Name=jgi.p|Trimin1|147102|organism=Tribonema minus UTEX_B_3156 |type=polypeptide|length=213bp MNPHLVARAQELCVANDREELKALFANYYEHFGAIPLDDSDVTDSQAINDback to top mRNA from alignment at Contig_92:570577..573359+ Legend: exonpolypeptideCDS Hold the cursor over a type above to highlight its positions in the sequence below.>mRNA_14624 ID=mRNA_14624|Name=jgi.p|Trimin1|147102|organism=Tribonema minus UTEX_B_3156 |type=mRNA|length=2783bp|location=Sequence derived from alignment at Contig_92:570577..573359+ (Tribonema minus UTEX_B_3156 )back to top Coding sequence (CDS) from alignment at Contig_92:570577..573359+ >mRNA_14624 ID=mRNA_14624|Name=jgi.p|Trimin1|147102|organism=Tribonema minus UTEX_B_3156 |type=CDS|length=639bp|location=Sequence derived from alignment at Contig_92:570577..573359+ (Tribonema minus UTEX_B_3156 )back to top |