mRNA_14624 (mRNA) Tribonema minus UTEX_B_3156

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
Namejgi.p|Trimin1|147102
Unique NamemRNA_14624
TypemRNA
OrganismTribonema minus UTEX_B_3156 (Tribonema minus UTEX_B_3156 )
Homology
BLAST of jgi.p|Trimin1|147102 vs. uniprot
Match: A0A835YHT3_9STRA (Uncharacterized protein (Fragment) n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A835YHT3_9STRA)

HSP 1 Score: 430 bits (1105), Expect = 2.100e-152
Identity = 213/213 (100.00%), Postives = 213/213 (100.00%), Query Frame = 1
Query:    1 MNPHLVARAQELCVANDREELKALFANYYEHFGAIPLDDSDVTDSQAINDLVRENVILNGVTFFGHSQQFLKALRRVVDVWASSLEYTGALTASEISQRVLRKASRTTSGSDSYFTVQQLFSADENYLLKPRGFALPPIEVDVYLSDGCIHSKVTCTNLYGLYSMDDIDCPTDGVLKPPKPWLSLDTTVVEETNHNTCQNVRHLEIIIPEDAD 639
            MNPHLVARAQELCVANDREELKALFANYYEHFGAIPLDDSDVTDSQAINDLVRENVILNGVTFFGHSQQFLKALRRVVDVWASSLEYTGALTASEISQRVLRKASRTTSGSDSYFTVQQLFSADENYLLKPRGFALPPIEVDVYLSDGCIHSKVTCTNLYGLYSMDDIDCPTDGVLKPPKPWLSLDTTVVEETNHNTCQNVRHLEIIIPEDAD
Sbjct:    1 MNPHLVARAQELCVANDREELKALFANYYEHFGAIPLDDSDVTDSQAINDLVRENVILNGVTFFGHSQQFLKALRRVVDVWASSLEYTGALTASEISQRVLRKASRTTSGSDSYFTVQQLFSADENYLLKPRGFALPPIEVDVYLSDGCIHSKVTCTNLYGLYSMDDIDCPTDGVLKPPKPWLSLDTTVVEETNHNTCQNVRHLEIIIPEDAD 213          
BLAST of jgi.p|Trimin1|147102 vs. uniprot
Match: A0A6H5KCI5_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KCI5_9PHAE)

HSP 1 Score: 202 bits (515), Expect = 7.710e-61
Identity = 110/212 (51.89%), Postives = 147/212 (69.34%), Query Frame = 1
Query:    1 MNPHLVARAQELCVANDREELKALFANYYEHFGAIPLDDSDVTDSQAINDLVRENVILNGVTFF-GHSQQFLKALRRVVDVWASSLEYTGALTASEISQRVLRKASRTTSGSDSYFTVQQLFSADENYLLKPRGFALPPIEVDVYLSDGCIHSKVTCTNLYGLYSMDDIDCPTDG-VLKPPKPWLSLDTTVVEETNHNTCQNVRHLEIIIPE 630
            MN  ++   Q LC   +R+ +  +F N+ EHF  IPL+DS+V   QAINDL+RENVILNGV FF GH + FL++LR+VV++ + S  Y G  T SEI +RVL KASRTTSGSDSYFTVQQLF+ + +YLLK R    P I V+V+L D  IHS V C N YGL+S+D+I+  +    +  P+ WL LDT VVE+T++ T +NVR+L +  P+
Sbjct:    1 MNQTVIETVQTLCRKGNRDSVLTVFQNFPEHFSCIPLNDSNVESKQAINDLLRENVILNGVKFFSGHGELFLESLRQVVEILSKSPAYKGHRTGSEIVERVLCKASRTTSGSDSYFTVQQLFT-NSDYLLKKRSERPPAINVEVFLVDNSIHSVVACANYYGLFSLDEIEAESQTFAVHTPRAWLRLDTMVVEKTDYLTGRNVRYLRVDTPD 211          
BLAST of jgi.p|Trimin1|147102 vs. uniprot
Match: A0A835YWA6_9STRA (Uncharacterized protein n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A835YWA6_9STRA)

HSP 1 Score: 121 bits (303), Expect = 3.810e-30
Identity = 69/163 (42.33%), Postives = 95/163 (58.28%), Query Frame = 1
Query:  169 ILNGVTFFGHSQQFLKALRRVVDVWASSLEYTGALTASEISQRVLRKASRTTSGSDSYFTVQQLFSADENYLLKPRGFALPPIEVDVYLSDGCIHSKVTCTNLYGLYSMDDIDCPTDGVLKPPKPWLSLDTTVVEETNHNTC--------QNVRHLEIIIPED 633
            +LNG    G   +F +AL +++    +   Y G  + S+++  ++RKASRT SG DSY  V QL+ ADENYLLKPR   LPP+EV+V L D CI SKV   N   LY M D++      ++  +PWL  DTTV E TNH+           ++R+L + IPED
Sbjct:    1 MLNGTLAGGQRCEFTEALLKLLKRLMARPRYQGECSPSDMACAIMRKASRTASGCDSYHFVHQLYGADENYLLKPRAVTLPPVEVEVSLVDSCIISKVITRNPLALYKMADLENSAAEAVQV-EPWLYFDTTVTERTNHDARGGSSSSGNDSIRYLSVAIPED 162          
BLAST of jgi.p|Trimin1|147102 vs. uniprot
Match: A0A7S2IA15_9STRA (Hypothetical protein n=1 Tax=Helicotheca tamesis TaxID=374047 RepID=A0A7S2IA15_9STRA)

HSP 1 Score: 104 bits (260), Expect = 4.530e-24
Identity = 68/186 (36.56%), Postives = 100/186 (53.76%), Query Frame = 1
Query:  103 IPLDDSDVTD-SQAINDLVRENVILNGVTF------FGHSQQFLKALRRVVDVWASSLEYTGALTASE-ISQRVLRKASRTTSGSDSYFTVQQLFSADENYLLKPRGF--ALPPIEVDVYLSDGCIHSKVTCTNLYGLYSMDDIDCPTDGVLKPPKPWLSLDTTVVEETNHNTCQNVRHLEIIIPE 630
            IPLD S   + S A+ ++ +E VILNGV F      FG  + FL  LR  VD   S  E  G L  S  + + ++ + +RT S +DSYF +  L  + +  L+  +    ALPPIE++V+ S GC+H+  +  N+YGLY   D     D      KPW+S+D  V E  N    ++VR+L + IP+
Sbjct:   51 IPLDPSQPGEMSAALAEVSKERVILNGVPFLHGAARFGGGEDFLFMLREAVD---SLCESEGLLCNSRSVYEGIVTRMARTASAADSYFKLNSLLGSPDLMLMPSQAASSALPPIELEVFASSGCLHASFSTANVYGLYRKADFALQADINAGTNKPWISIDAIVEERVNFGNGESVRYLNVKIPD 233          
BLAST of jgi.p|Trimin1|147102 vs. uniprot
Match: T0SI70_SAPDV (Uncharacterized protein n=1 Tax=Saprolegnia diclina (strain VS20) TaxID=1156394 RepID=T0SI70_SAPDV)

HSP 1 Score: 99.4 bits (246), Expect = 4.860e-22
Identity = 67/214 (31.31%), Postives = 114/214 (53.27%), Query Frame = 1
Query:    1 MNPHLVARAQELCVANDREELKALFANYYEHFGAIPLDDS-DVTDSQAINDLVRENVILNGVTFFG--HSQQFLKALRRVVDVWASSLEYTGALTASEISQRVLRKASRTTSGSDSYFTVQQLFSADENYLLKPRGFALPPIEVDVYLSD-GCIHSKVTCTNLYGLYSMDDIDCPTDGVLKPPKPWLSLDTTVVEETNHNTCQNVRHLEIIIPE 630
            ++P LV   ++  V++ + +   +  ++    G +PL    DV  +QA  D VRE+++LNGV F G   ++ F+ A++R+V  +    +        E S R++R+ SRT SG+DSYF +Q+LF A    L+KPR    PP+++ +     G    +++ +NLYG+Y  DDI+           P + +DT +VE  +  T +  R L +  PE
Sbjct:   14 LDPRLVQAVRKRVVSSRKADFIEVLGSHLLR-GRLPLSSHCDVDTAQAFRDAVREDIMLNGVRFVGDHRTEAFVAAVKRIVQKFLPKDQCL------EASDRIMRRCSRTHSGTDSYFALQELFGAT-GLLIKPRPGGTPPLDIRLGRDKTGSYKCRISASNLYGIYRHDDIEQLLTHNEHTLAPLVEIDTVIVEAMSFATGETTRTLSLRTPE 219          
BLAST of jgi.p|Trimin1|147102 vs. uniprot
Match: A0A1V9YR98_9STRA (Uncharacterized protein n=1 Tax=Achlya hypogyna TaxID=1202772 RepID=A0A1V9YR98_9STRA)

HSP 1 Score: 98.6 bits (244), Expect = 9.150e-22
Identity = 69/214 (32.24%), Postives = 114/214 (53.27%), Query Frame = 1
Query:    1 MNPHLVARAQELCVANDREE-LKALFANYYEHFGAIPLDDSDVTDSQAINDLVRENVILNGVTFFG--HSQQFLKALRRVVDVWASSLEYTGALTASEISQRVLRKASRTTSGSDSYFTVQQLFSADENYLLKPRGFALPPIEVDVYLSD-GCIHSKVTCTNLYGLYSMDDIDCPTDGVLKPPKPWLSLDTTVVEETNHNTCQNVRHLEIIIPE 630
            ++PHLVA  ++   +  + + + AL +       A+   D +V   QA  D VRE+++LNGV F G   ++ F+ A++R+V  +   L    AL    +S RV+R+ SRT SG+DSYF +Q+LF   + +L+KPR    PP+++ +     G    +++  NLY +Y   DI+          +P L +DT +VE  + +     RHL +  PE
Sbjct:   12 LDPHLVATVRKRVASGRKADFVDALHSRLLSQRLALS-SDCEVDTVQAFRDAVREDIMLNGVRFVGDHRTEAFVAAVKRIVQKF---LPQDKALA---VSDRVMRRCSRTHSGTDSYFALQELFGGPD-FLIKPRQGGTPPLDIALGRDKTGAFKCRISAANLYAIYRNADIELLLTQQGHTLEPLLEVDTVIVEAIDFSAGTTTRHLSMRTPE 217          
BLAST of jgi.p|Trimin1|147102 vs. uniprot
Match: A0A7S3UYC6_HETAK (Hypothetical protein n=1 Tax=Heterosigma akashiwo TaxID=2829 RepID=A0A7S3UYC6_HETAK)

HSP 1 Score: 100 bits (248), Expect = 1.420e-21
Identity = 62/153 (40.52%), Postives = 82/153 (53.59%), Query Frame = 1
Query:  118 SDVTDSQAINDLVRENVILNGVTFFGHSQQFLKALRRVVDVWASSLEYTGALTASEISQRVLRKASRTTSGSDSYFTVQQLFSADENYLLKPRGFALPPIEVDVYLSD-GCIHSKVTCTNLYGLYSMDDIDCPTDGVLKPPKPWLSLDTTVVE 573
            ++V   QA  D+ RE VI NGV FFG+ ++F+  L   V      L +     A EI++ +L KASRT SG DSYF V +LF     +LLKPR    PP+ VD+  +  G +   +   NLYGLY    ID  +    + P PWL LD  V E
Sbjct:   52 AEVEPDQAKRDMQREKVIFNGVNFFGYQERFVPFLESYVRRLVKKLRWPPQR-AQEITEAILEKASRTASGYDSYFFVNELFEVP-GHLLKPRFEPTPPVRVDLVAAPRGALLCHIASKNLYGLYDFTHIDDTSRADDEHPSPWLRLDAEVFE 202          
BLAST of jgi.p|Trimin1|147102 vs. uniprot
Match: W4H072_9STRA (Uncharacterized protein n=1 Tax=Aphanomyces astaci TaxID=112090 RepID=W4H072_9STRA)

HSP 1 Score: 98.6 bits (244), Expect = 1.530e-21
Identity = 66/175 (37.71%), Postives = 99/175 (56.57%), Query Frame = 1
Query:  121 DVTDSQAINDLVRENVILNGVTFFG--HSQQFLKALRRVVDVWASSLEYTGALTASEISQRVLRKASRTTSGSDSYFTVQQLFSADENYLLKPRGFALPPIEVDVYLS---DGCIHSKVTCTNLYGLYSMDDIDCPTD-GVLKPPKPWLSLDTTVVEETNHNTCQNVRHLEIIIP 627
            DV  +QA  D VRE+++LNGV F G   ++ F+ A++R+V+ + S+ + +       +S RV+R  SRT SG+DSYF +Q+LF   +  L+KPR    PP  +DV L     G +  ++   NLYGLY  DDI+     G      P++ +DT +VEE N  T    R+L +  P
Sbjct:   74 DVDTAQAFRDAVREDIVLNGVQFVGDHRTEAFVAAVKRIVEKYISTPKKS-----LHVSDRVMRSCSRTHSGADSYFALQELFGHPD-LLIKPRQDPPPP-PLDVTLGVDRKGTLKCRICAANLYGLYRHDDIEQEVVYGRTAVVPPFVLVDTVIVEEINFTTDVATRYLSVRSP 241          
BLAST of jgi.p|Trimin1|147102 vs. uniprot
Match: A0A6V2LGI6_9STRA (Hypothetical protein n=1 Tax=Ditylum brightwellii TaxID=49249 RepID=A0A6V2LGI6_9STRA)

HSP 1 Score: 97.1 bits (240), Expect = 4.910e-21
Identity = 65/191 (34.03%), Postives = 98/191 (51.31%), Query Frame = 1
Query:  103 IPLDDSDVTD-SQAINDLVRENVILNGVTF------FGHSQQFLKALRRVVDVWASSLEYTGALTASE-ISQRVLRKASRTTSGSDSYFTVQQLFSADENYLLKPRGFA---LPPIEVDVYLSDGCIHSKVTCTNLYGLYSMDDID----CPTDGVLKPPKPWLSLDTTVVEETNHNTCQNVRHLEIIIPE 630
            +PLD S   + S AI+++ +E +ILNGV F      +G  + FL  LR VVD         G L     +   ++ + +RT S +DSYF +  L  + +  L+  +  +   LPPIEV+V+ S GC+H+  +  N+YGLY   D+        D      KPW+S++  V E  N    + VRHL + IPE
Sbjct:   41 VPLDPSQPGEISAAISEVAKEPIILNGVPFLRGAARYGGGEDFLLMLREVVDTLCKG---EGMLCHPRAVYDGIVTRMARTASAADSYFKLNSLLGSPDLMLMPAQNASSKILPPIEVEVFASAGCVHASFSTANVYGLYRKADLKDFAGLQADINAGTSKPWISINAVVEERVNFENGECVRHLSVKIPE 228          
BLAST of jgi.p|Trimin1|147102 vs. uniprot
Match: A0A024U3Z4_9STRA (Uncharacterized protein n=1 Tax=Aphanomyces invadans TaxID=157072 RepID=A0A024U3Z4_9STRA)

HSP 1 Score: 93.6 bits (231), Expect = 1.030e-19
Identity = 63/175 (36.00%), Postives = 99/175 (56.57%), Query Frame = 1
Query:  121 DVTDSQAINDLVRENVILNGVTFFG--HSQQFLKALRRVVDVWASSLEYTGALTASEISQRVLRKASRTTSGSDSYFTVQQLFSADENYLLKPRGFALPP-IEVDVYLS-DGCIHSKVTCTNLYGLYSMDDIDCPTD-GVLKPPKPWLSLDTTVVEETNHNTCQNVRHLEIIIPE 630
            +V  +QA  D VRE+++LNGV F G   ++ F+ A++R+V+ +      T    A  +S RV+R  SRT SG+D+YF +Q+LF   +  L+KPR    PP +EV + +   G +  ++   NL+GLY  DDI+     G      P++ +DT +VEE +  T    R+L +  PE
Sbjct:   66 EVNTAQAFRDAVREDIVLNGVQFVGDHRTEAFVAAVKRIVEKFV-----TKPRKALHVSDRVMRSCSRTHSGADAYFALQELFGHPD-LLIKPRSDPPPPPLEVTLGVDRKGSLKCRICAANLFGLYRHDDIEREVMLGRTAVVPPFVLVDTVIVEEIDFATDMAKRYLSVRSPE 234          
The following BLAST results are available for this feature:
BLAST of jgi.p|Trimin1|147102 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 16
Match NameE-valueIdentityDescription
A0A835YHT3_9STRA2.100e-152100.00Uncharacterized protein (Fragment) n=1 Tax=Tribone... [more]
A0A6H5KCI5_9PHAE7.710e-6151.89Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
A0A835YWA6_9STRA3.810e-3042.33Uncharacterized protein n=1 Tax=Tribonema minus Ta... [more]
A0A7S2IA15_9STRA4.530e-2436.56Hypothetical protein n=1 Tax=Helicotheca tamesis T... [more]
T0SI70_SAPDV4.860e-2231.31Uncharacterized protein n=1 Tax=Saprolegnia diclin... [more]
A0A1V9YR98_9STRA9.150e-2232.24Uncharacterized protein n=1 Tax=Achlya hypogyna Ta... [more]
A0A7S3UYC6_HETAK1.420e-2140.52Hypothetical protein n=1 Tax=Heterosigma akashiwo ... [more]
W4H072_9STRA1.530e-2137.71Uncharacterized protein n=1 Tax=Aphanomyces astaci... [more]
A0A6V2LGI6_9STRA4.910e-2134.03Hypothetical protein n=1 Tax=Ditylum brightwellii ... [more]
A0A024U3Z4_9STRA1.030e-1936.00Uncharacterized protein n=1 Tax=Aphanomyces invada... [more]

Pages

back to top
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
Contig_92contigContig_92:570577..573359 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Tribonema minus UTEX_B_31562021-06-17
Properties
Property NameValue
ProteomeIdTrimin1|147102|gw1.92.74.1
Max annot lvl121069|Pythiales
EggNOG OGs2APGJ@1|root,2RZGR@2759|Eukaryota,1MI37@121069|Pythiales
Evalue5.13e-24
Seed ortholog65071.PYU1_T000024
Hectar predicted targeting categoryother localisation
TranscriptId147424
TrackFilteredModels1
ProteinId147102
Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesTypePosition
jgi.p|Trimin1|147102gene_14624Tribonema minus UTEX_B_3156 geneContig_92 570577..573359 +


The following exon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
exon_14624_1exon_14624_1Tribonema minus UTEX_B_3156 exonContig_92 570577..570741 +
exon_14624_2exon_14624_2Tribonema minus UTEX_B_3156 exonContig_92 571945..572060 +
exon_14624_3exon_14624_3Tribonema minus UTEX_B_3156 exonContig_92 572480..572717 +
exon_14624_4exon_14624_4Tribonema minus UTEX_B_3156 exonContig_92 573240..573359 +


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
CDS_14624CDS_14624Tribonema minus UTEX_B_3156 CDSContig_92 570577..570741 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
jgi.p|Trimin1|147102Trimin1|147102|gw1.92.74.1Tribonema minus UTEX_B_3156 polypeptideContig_92 570577..573359 +


Sequences
The following sequences are available for this feature:

spliced messenger RNA

>mRNA_14624 ID=mRNA_14624|Name=jgi.p|Trimin1|147102|organism=Tribonema minus UTEX_B_3156 |type=mRNA|length=639bp|location=Sequence derived from alignment at Contig_92:570577..573359+ (Tribonema minus UTEX_B_3156 )|Notes=Excludes all bases but those of type(s): exon.  
ATGAATCCGCACCTGGTGGCCAGGGCTCAGGAGCTGTGCGTGGCCAACGA
CAGGGAGGAGCTGAAGGCGCTGTTTGCAAATTACTATGAGCACTTTGGAG
CCATACCGCTGGATGACAGCGATGTCACGGATTCGCAGGCGATCAATGAC
CTTGTTAGGGAAAATGTGATTCTGAATGGAGTCACGTTCTTTGGGCACAG
TCAGCAGTTCTTGAAGGCTCTGCGGAGGGTGGTGGATGTATGGGCATCAT
CGCTTGAGTACACTGGCGCTCTCACCGCAAGTGAGATATCGCAGCGAGTC
CTACGGAAGGCGAGCCGTACTACCAGTGGAAGTGATAGCTACTTCACTGT
GCAGCAGCTCTTCTCTGCCGACGAAAATTACCTGCTGAAGCCCCGTGGTT
TTGCACTGCCACCTATAGAGGTGGATGTATACCTGTCTGACGGCTGCATT
CACAGCAAGGTCACCTGCACCAACTTGTACGGGCTCTACAGCATGGATGA
CATAGACTGCCCCACAGATGGAGTGCTCAAGCCTCCCAAGCCATGGCTCT
CACTGGACACAACGGTGGTAGAGGAGACCAACCACAACACATGTCAGAAT
GTACGGCACTTGGAGATCATTATCCCAGAGGACGCAGAC
back to top

protein sequence of jgi.p|Trimin1|147102

>Trimin1|147102|gw1.92.74.1 ID=Trimin1|147102|gw1.92.74.1|Name=jgi.p|Trimin1|147102|organism=Tribonema minus UTEX_B_3156 |type=polypeptide|length=213bp
MNPHLVARAQELCVANDREELKALFANYYEHFGAIPLDDSDVTDSQAIND
LVRENVILNGVTFFGHSQQFLKALRRVVDVWASSLEYTGALTASEISQRV
LRKASRTTSGSDSYFTVQQLFSADENYLLKPRGFALPPIEVDVYLSDGCI
HSKVTCTNLYGLYSMDDIDCPTDGVLKPPKPWLSLDTTVVEETNHNTCQN
VRHLEIIIPEDAD
back to top

mRNA from alignment at Contig_92:570577..573359+

Legend: exonpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_14624 ID=mRNA_14624|Name=jgi.p|Trimin1|147102|organism=Tribonema minus UTEX_B_3156 |type=mRNA|length=2783bp|location=Sequence derived from alignment at Contig_92:570577..573359+ (Tribonema minus UTEX_B_3156 )
ATGAATCCGCACCTGGTGGCCAGGGCTCAGGAGCTGTGCGTGGCCAACGA CAGGGAGGAGCTGAAGGCGCTGTTTGCAAATTACTATGAGCACTTTGGAG CCATACCGCTGGATGACAGCGATGTCACGGATTCGCAGGCGATCAATGAC CTTGTTAGGGAAAATGTAAGTCATGTGCCTCGGTTTACATGTTTAAAACA GTATTGCTGCCGATAGTCTTCATTTAGAACGGCGTTTGTAACTGCAGCTG TACACCCGCAAGGCCCACATCTGCCGAGCAAAGGCCCGGTTGCCAGGAAT CCGCAGTACACAGCCCCCCCGCGATCGCAGATGAAGAAAATTTAAAGATA TATATGTGCTTGTTTCATTGTTTGCATTGCCGTCTGCATGACGGCCGCCG CAGGACTTGCGTGCTGCATGATGACGCAGTTTAGCAACACCTCAGAGCCG ATGCACTTTGCCCTATGCATACCGTAAGCGGTGTGCTTTACCTATTGCTA ACACCATAGAAGGAACACGGGCTTTGAGAGTAGCGAAGTTTGCGCCCCCC CTTCACACAGCTTAAGAGATTGCCACTGATTCGACTGTGACCTCTGGGAG CTGGACGATTGGCAGTTTGATGATGCACTCTGTCAACAACCAAGTGCAGA AGTATGATGCTGTTTGGCATACTACAAGCACAGATTGGTGAGAAGAAAAT GTTTGACAGTTATGGATCTTGTCGGCTAATGCTGTGGCCAGCGAAGCAAC AATACCTCGAGAAGTAATTGTTCTTGACAGTGAAAATTGTGCAATGTTTG CAGTTTTCAATGTTTGCATGCTCGTTGGAATGTGTTTTGAGAATATAAAT ATCATCAGAGATCACGCCTTAATAGGTCTTTTGTGTGACCTCACGTCTGA TGAATCATCATTGGCATTGTCATGGCAAGCGTAAGCACCCCGACTGCGCC AGTGAGCCCAACTTCGTGCTCTGTTATCACTTATAAGCCATGATGCCTGG ATATGCCAACACTTGGTGGACTTAGGGCTGCAACACCTTCAGCCACACTT ACACTGCAAGCGTTAGCCTAGGACTTAGTGACAGCGTGCGATCGTCATTA GATTTACATGCCATTGCAATGATATGGTTGCGATAACCCAGGTGTCCGAC TCGTCGGACGACAGAGTTCGGTCCGATCGCAGGTGTTGAAGTGCTTGCTT ACACTAAAGTACGTGGCCACGCGATTTGACAGAACACACAAGTGGAGAAA TCGGTGACGATTACGTCAAAGTGACCCGGAAAACAATGAAGCTCAGCATA TGTAGGCTGTAGGCTGTAGGCATACGTTCTCATGTCTGCTGCTTCTCATT GCGACCGTTTTTTGACAGGTGATTCTGAATGGAGTCACGTTCTTTGGGCA CAGTCAGCAGTTCTTGAAGGCTCTGCGGAGGGTGGTGGATGTATGGGCAT CATCGCTTGAGTACACTGGCGCTCTCACCGCAAGGTACACTCTCCAGTGC ATTGCTTTCTGTTCATTGCGCCACTGCCGTGCATGCTGTGAAGTCATTCA CAAGCACCTATCAAGAAAGTGCAACCAGCTACCAGCACTCAATGGCCTTA CCGTGGCGTCAGCAGCACTTGATGACTCGAAATGCTAGCAAGTAGAGGAA GCATCTGTAACTTAATGCCATTATGATACTTGCACTATCCGCATTTACAC AGGTGACAGTAGCTGTTACTCCCCTTGAATCCAAGTGTAAAATGTAAAGA AGGGTAGCTTGTAGTATACAAGTATGTGCAGCATGAAGCGACCCGCGCTG TAATCTCTGCTCCTGCCAGCGGCAGGTGTTTGCGTGTATTGCCCTTGCTA CCTGCTGATAAGCAGCTGAAGTTCAATGCACCCTCGTTCCCTCATCTCTG CAGTGAGATATCGCAGCGAGTCCTACGGAAGGCGAGCCGTACTACCAGTG GAAGTGATAGCTACTTCACTGTGCAGCAGCTCTTCTCTGCCGACGAAAAT TACCTGCTGAAGCCCCGTGGTTTTGCACTGCCACCTATAGAGGTGGATGT ATACCTGTCTGACGGCTGCATTCACAGCAAGGTCACCTGCACCAACTTGT ACGGGCTCTACAGCATGGATGACATAGACTGCCCCACAGATGTGAGTGCG TGCACCTTCTTGGTGAACCTGTGTAAGCTGCATCTGCTGTTTTCTGGCAT GCTTGACAGTTAAAAGGCGGGGTTTGGCTATAATGTTGCTGCAAACTTGT TGTTGCCTTGTGCTTTTTAAGGGGCGTACGACGCCTCATTGCTGGGCAGT GCGAAGTGATGCTCATCATTTTTACTGTCAACGTGATTGAGTCACCCAGT GCCGATTGTGGTCTTGGTCATGTGCCCGCATGACAACTGCTACAATGGTT AGCGAAGGATTGAGAATGCTCTCCGCTTGAAGTAAAGGAATCAGTGAATG CATTATCAATGTGCAGTTGTGCTGTTCCAGGACTGTCGAAGATGCAGTGC GCATATTATAACCTTGATGTCTCAGGGCTAGGGCTAGGGTTAGGCGAGCC GTCGCTAATGCTGTTGCTTCTTGTCAAAACATAATGATTGTGCTATGAGG AAAATGTTTGACTCTGTAAATCTGTCTTTGATTTGTGCGTCATTGTTGCT GAATGCGCTGCAGGGAGTGCTCAAGCCTCCCAAGCCATGGCTCTCACTGG ACACAACGGTGGTAGAGGAGACCAACCACAACACATGTCAGAATGTACGG CACTTGGAGATCATTATCCCAGAGGACGCAGAC
back to top

Coding sequence (CDS) from alignment at Contig_92:570577..573359+

>mRNA_14624 ID=mRNA_14624|Name=jgi.p|Trimin1|147102|organism=Tribonema minus UTEX_B_3156 |type=CDS|length=639bp|location=Sequence derived from alignment at Contig_92:570577..573359+ (Tribonema minus UTEX_B_3156 )
ATGAATCCGCACCTGGTGGCCAGGGCTCAGGAGCTGTGCGTGGCCAACGA
CAGGGAGGAGCTGAAGGCGCTGTTTGCAAATTACTATGAGCACTTTGGAG
CCATACCGCTGGATGACAGCGATGTCACGGATTCGCAGGCGATCAATGAC
CTTGTTAGGGAAAATGTGATTCTGAATGGAGTCACGTTCTTTGGGCACAG
TCAGCAGTTCTTGAAGGCTCTGCGGAGGGTGGTGGATGTATGGGCATCAT
CGCTTGAGTACACTGGCGCTCTCACCGCAAGTGAGATATCGCAGCGAGTC
CTACGGAAGGCGAGCCGTACTACCAGTGGAAGTGATAGCTACTTCACTGT
GCAGCAGCTCTTCTCTGCCGACGAAAATTACCTGCTGAAGCCCCGTGGTT
TTGCACTGCCACCTATAGAGGTGGATGTATACCTGTCTGACGGCTGCATT
CACAGCAAGGTCACCTGCACCAACTTGTACGGGCTCTACAGCATGGATGA
CATAGACTGCCCCACAGATGGAGTGCTCAAGCCTCCCAAGCCATGGCTCT
CACTGGACACAACGGTGGTAGAGGAGACCAACCACAACACATGTCAGAAT
GTACGGCACTTGGAGATCATTATCCCAGAGGACGCAGAC
back to top