mRNA_14576 (mRNA) Tribonema minus UTEX_B_3156

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
Namejgi.p|Trimin1|338565
Unique NamemRNA_14576
TypemRNA
OrganismTribonema minus UTEX_B_3156 (Tribonema minus UTEX_B_3156 )
Homology
BLAST of jgi.p|Trimin1|338565 vs. uniprot
Match: A0A835YJ30_9STRA (Uncharacterized protein n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A835YJ30_9STRA)

HSP 1 Score: 1084 bits (2803), Expect = 0.000e+0
Identity = 824/824 (100.00%), Postives = 824/824 (100.00%), Query Frame = 1
Query:    1 MGVDVALAALERCLTDGDHGGAGAGWKNIQTPVRSAFEAAAEVMRQQSLALAETRQTVKSLERTLKSMRTEVAAKLDKHASAAAAANRALADSLRHSIAAQTEARVADAXXXXXXXXXXXXDAQQRARALEATGXXXXXXXXXALQAVRADVAGRATLADLDGYIPRTEAATRQDLADVEAQLLSRXXXXXXXXXXXXRVAWAELPPLLADKADASALDALRRDAQLSAAAELGAAVTPLRAALKAXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXLRAEMPMLAXXXXXEALRESXXXXXXXXVTPAQLAXXXXXXXXXXXXXXXXXXXXXXXXXXXXIAALRAEVCDSLARWEGCTDGLRRSLEAAKAELVEVLNKKAYRSDVAXXXXXXXXXXXXXXXXXXXXXXXXXXXRAKADVAALERVAADAAARVGAAELAELSSRVRASMTQLSADVSGARVDLRSEMERLGQRLRRKADAEELAALRKELLPLSAAAAGNPAAKATQAEVAAMVRLAVRQXXXXXXXXXXXXXXXXXXXXXRKAADGGDLVSERGARDVARAEVRPLATQLEDLSARVARLTATTTALQQHELQVKASXXXXXXXXXXXXSPLGGSPARSVGMAHMPPPPPLLPQGLWLCRSGCTSRGQWVPWEAQALNTAPASLAWERGRPGIVAAPAGLYRLIIGFFTLQPFTASVYVNGEPIFAMRQPAASXXXXXXXXXXPLLPQRMHEEGEGLSSEDGDEVPLPSPPHLHASATTRYRHSAGEVLSASEVHFLALPARAEISVRYEGAARAQGFLGLQKLPGA 2472
            MGVDVALAALERCLTDGDHGGAGAGWKNIQTPVRSAFEAAAEVMRQQSLALAETRQTVKSLERTLKSMRTEVAAKLDKHASAAAAANRALADSLRHSIAAQTEARVADAXXXXXXXXXXXXDAQQRARALEATGXXXXXXXXXALQAVRADVAGRATLADLDGYIPRTEAATRQDLADVEAQLLSRXXXXXXXXXXXXRVAWAELPPLLADKADASALDALRRDAQLSAAAELGAAVTPLRAALKAXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXLRAEMPMLAXXXXXEALRESXXXXXXXXVTPAQLAXXXXXXXXXXXXXXXXXXXXXXXXXXXXIAALRAEVCDSLARWEGCTDGLRRSLEAAKAELVEVLNKKAYRSDVAXXXXXXXXXXXXXXXXXXXXXXXXXXXRAKADVAALERVAADAAARVGAAELAELSSRVRASMTQLSADVSGARVDLRSEMERLGQRLRRKADAEELAALRKELLPLSAAAAGNPAAKATQAEVAAMVRLAVRQXXXXXXXXXXXXXXXXXXXXXRKAADGGDLVSERGARDVARAEVRPLATQLEDLSARVARLTATTTALQQHELQVKASXXXXXXXXXXXXSPLGGSPARSVGMAHMPPPPPLLPQGLWLCRSGCTSRGQWVPWEAQALNTAPASLAWERGRPGIVAAPAGLYRLIIGFFTLQPFTASVYVNGEPIFAMRQPAASXXXXXXXXXXPLLPQRMHEEGEGLSSEDGDEVPLPSPPHLHASATTRYRHSAGEVLSASEVHFLALPARAEISVRYEGAARAQGFLGLQKLPGA
Sbjct:    1 MGVDVALAALERCLTDGDHGGAGAGWKNIQTPVRSAFEAAAEVMRQQSLALAETRQTVKSLERTLKSMRTEVAAKLDKHASAAAAANRALADSLRHSIAAQTEARVADAXXXXXXXXXXXXDAQQRARALEATGXXXXXXXXXALQAVRADVAGRATLADLDGYIPRTEAATRQDLADVEAQLLSRXXXXXXXXXXXXRVAWAELPPLLADKADASALDALRRDAQLSAAAELGAAVTPLRAALKAXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXLRAEMPMLAXXXXXEALRESXXXXXXXXVTPAQLAXXXXXXXXXXXXXXXXXXXXXXXXXXXXIAALRAEVCDSLARWEGCTDGLRRSLEAAKAELVEVLNKKAYRSDVAXXXXXXXXXXXXXXXXXXXXXXXXXXXRAKADVAALERVAADAAARVGAAELAELSSRVRASMTQLSADVSGARVDLRSEMERLGQRLRRKADAEELAALRKELLPLSAAAAGNPAAKATQAEVAAMVRLAVRQXXXXXXXXXXXXXXXXXXXXXRKAADGGDLVSERGARDVARAEVRPLATQLEDLSARVARLTATTTALQQHELQVKASXXXXXXXXXXXXSPLGGSPARSVGMAHMPPPPPLLPQGLWLCRSGCTSRGQWVPWEAQALNTAPASLAWERGRPGIVAAPAGLYRLIIGFFTLQPFTASVYVNGEPIFAMRQPAASXXXXXXXXXXPLLPQRMHEEGEGLSSEDGDEVPLPSPPHLHASATTRYRHSAGEVLSASEVHFLALPARAEISVRYEGAARAQGFLGLQKLPGA 824          
BLAST of jgi.p|Trimin1|338565 vs. uniprot
Match: A0A061SEB4_9CHLO (Uncharacterized protein n=1 Tax=Tetraselmis sp. GSL018 TaxID=582737 RepID=A0A061SEB4_9CHLO)

HSP 1 Score: 88.6 bits (218), Expect = 7.850e-16
Identity = 56/170 (32.94%), Postives = 81/170 (47.65%), Query Frame = 1
Query: 1954 GLWLCRSGCTSRGQWVPWEAQALNTAPASLAWERGRPGIVAAPAGLYRLIIGFFTLQPFTASVYVNGEPIFAMRQPAASXXXXXXXXXXPLLPQRMHEEGEGLSSEDGDEVPLPSPPHLHASATTRYRHSAGEVLSASEVHFLALPARAEISVRYEGAARAQGFLGLQKL 2463
            G W+ RSG T  G  VPW  Q++N  P +L WE+ R  IV   AG+Y +++GFF+ +  T  ++VNGEP+ A    + S                       L+   G         HL     T  R+++G     S V FL LP RA+I+V Y G    +GF+ L++L
Sbjct:  117 GRWIWRSGRTKAGGAVPWNVQSVNCDPQNLKWEKDRSSIVVVSAGMYEVMLGFFSNRKPTVQLHVNGEPVLAAVSTSESV----------------------LNRSTG---------HL----ATLGRYASGNTAGLSLVDFLLLPQRAKITVTYSGDEAGEGFISLKRL 251          
BLAST of jgi.p|Trimin1|338565 vs. uniprot
Match: A0A1R2ARB7_9CILI (Uncharacterized protein n=2 Tax=Stentor coeruleus TaxID=5963 RepID=A0A1R2ARB7_9CILI)

HSP 1 Score: 89.0 bits (219), Expect = 2.080e-14
Identity = 51/170 (30.00%), Postives = 81/170 (47.65%), Query Frame = 1
Query: 1954 GLWLCRSGCTSRGQWVPWEAQALNTAPASLAWERGRPGIVAAPAGLYRLIIGFFTLQPFTASVYVNGEPIFAMRQPAASXXXXXXXXXXPLLPQRMHEEGEGLSSEDGDEVPLPSPPHLHASATTRYRHSAGEVLSASEVHFLALPARAEISVRYEGAARAQGFLGLQKL 2463
            G WL +SG    G  VPWE Q++NTAP +  WE+ +  IV    GLY +++GF++ +  T  + VNGEPI +                       ++     +    G   P+ S P+             G +   + + F+ALPARA +S+ + G   ++GF+GL+KL
Sbjct:  714 GRWLWKSGELKNGSLVPWEIQSVNTAPDNFLWEKEKISIVTVAPGLYEIVLGFYSRKKPTIQILVNGEPIMSA----------------------VNSSSYVVHHSSGKLKPVTSHPN-------------GNIAGITLIDFIALPARARVSIGFTGEIHSEGFIGLRKL 848          
BLAST of jgi.p|Trimin1|338565 vs. uniprot
Match: A0A7S3IAC5_9CILI (Hypothetical protein n=1 Tax=Fabrea salina TaxID=342563 RepID=A0A7S3IAC5_9CILI)

HSP 1 Score: 87.8 bits (216), Expect = 4.420e-14
Identity = 53/170 (31.18%), Postives = 75/170 (44.12%), Query Frame = 1
Query: 1954 GLWLCRSGCTSRGQWVPWEAQALNTAPASLAWERGRPGIVAAPAGLYRLIIGFFTLQPFTASVYVNGEPIFAMRQPAASXXXXXXXXXXPLLPQRMHEEGEGLSSEDGDEVPLPSPPHLHASATTRYRHSAGEVLSASEVHFLALPARAEISVRYEGAARAQGFLGLQKL 2463
            G W+ +SG    G  VPWE Q++NTAP +  WE  +  IV    GLY +  GF++ +     V VNGEPI +    A+                 +H     L                        +HS G +   + + F+ALPARA +S+ Y G    +GFLGL+KL
Sbjct:  642 GRWIWKSGELKSGNLVPWEVQSINTAPDNFLWEVEKTSIVCCTPGLYEINFGFYSRKKPNVQVLVNGEPILSAVNSASYV---------------VHHSSGRLKGAG--------------------QHSGGNITGLTLIDFVALPARARVSISYSGDTNVEGFLGLKKL 776          
BLAST of jgi.p|Trimin1|338565 vs. uniprot
Match: A0A8J8P4K0_HALGN (Uncharacterized protein n=1 Tax=Halteria grandinella TaxID=5974 RepID=A0A8J8P4K0_HALGN)

HSP 1 Score: 85.9 bits (211), Expect = 1.830e-13
Identity = 50/171 (29.24%), Postives = 81/171 (47.37%), Query Frame = 1
Query: 1954 GLWLCRSG-CTSRGQWVPWEAQALNTAPASLAWERGRPGIVAAPAGLYRLIIGFFTLQPFTASVYVNGEPIFAMRQPAASXXXXXXXXXXPLLPQRMHEEGEGLSSEDGDEVPLPSPPHLHASATTRYRHSAGEVLSASEVHFLALPARAEISVRYEGAARAQGFLGLQKL 2463
            G W+ +SG   +  Q VPWE QALNT P +  WE+ +  I+A   GLY L  GF++ +     +++NGE + ++ +                   +   E E  +                   TT+ +HSAG V   + + ++ALPARA +S+ ++G    +GF  L+KL
Sbjct:  684 GRWIWKSGELKTPNQLVPWEVQALNTCPDNFLWEKSKTSIIAVAPGLYELSFGFYSKKQPIVQIHLNGEALMSVNK------------------SQFTSEKENSNK-----------------ITTQGKHSAGNVTGLTLLDYIALPARARLSITFQGETHGEGFFSLRKL 819          
BLAST of jgi.p|Trimin1|338565 vs. uniprot
Match: A0A7S3CST3_9SPIT (Hypothetical protein n=1 Tax=Strombidium rassoulzadegani TaxID=1082188 RepID=A0A7S3CST3_9SPIT)

HSP 1 Score: 84.0 bits (206), Expect = 2.010e-13
Identity = 51/168 (30.36%), Postives = 75/168 (44.64%), Query Frame = 1
Query: 1960 WLCRSGCTSRGQWVPWEAQALNTAPASLAWERGRPGIVAAPAGLYRLIIGFFTLQPFTASVYVNGEPIFAMRQPAASXXXXXXXXXXPLLPQRMHEEGEGLSSEDGDEVPLPSPPHLHASATTRYRHSAGEVLSASEVHFLALPARAEISVRYEGAARAQGFLGLQKL 2463
            WL +SG    G  +PWE Q +NT P +  W+  +  I+    GLY +  GF+  +  T  V VNGEPI +    ++                 +H     L S                   T  +HSAG +   + + F++LPARA +S+ Y G  R +GF GL+KL
Sbjct:  261 WLWKSGDLQNGFAIPWEVQTINTCPENFLWDEDKSIILTVAPGLYEVNFGFYCGKQPTVQVLVNGEPILSAVNSSSYV---------------IHHSSGKLKS-------------------TGKQHSAGNLTGLTMIDFISLPARARVSLSYNGEKRCEGFFGLRKL 394          
BLAST of jgi.p|Trimin1|338565 vs. uniprot
Match: A0A078AG74_STYLE (Uncharacterized protein n=1 Tax=Stylonychia lemnae TaxID=5949 RepID=A0A078AG74_STYLE)

HSP 1 Score: 83.6 bits (205), Expect = 9.450e-13
Identity = 50/171 (29.24%), Postives = 85/171 (49.71%), Query Frame = 1
Query: 1954 GLWLCRSGCTSRGQWVPWEAQALNTAPASLAWERGRPGIVAAPAGLYRLIIGFFTLQPFTASVYVNGEPIFAMRQPAASXXXXXXXXXXPLLPQRMHEEG-EGLSSEDGDEVPLPSPPHLHASATTRYRHSAGEVLSASEVHFLALPARAEISVRYEGAARAQGFLGLQKL 2463
            G W+ +SG       VPWE QALNT P +  WE+ +  IVA   GLY +  GF++ +  T  +++NGEP+ ++ + + +           ++ + +++ G E   S  G                   +HSAG V   + + F+ALPARA +S+ +   +  +GF  ++KL
Sbjct:  666 GRWIWKSGEIKPNSLVPWEVQALNTCPDNFLWEKSKTSIVAVAPGLYEVSFGFYSKKQPTVQIHLNGEPLMSVSKSSQAQIRCN------IIFRFVNDHGKENRISNVG-------------------KHSAGNVTGLTLLDFIALPARARLSLTFTCDSPGEGFFNIRKL 811          
BLAST of jgi.p|Trimin1|338565 vs. uniprot
Match: J9IZ48_9SPIT (Uncharacterized protein n=1 Tax=Oxytricha trifallax TaxID=1172189 RepID=J9IZ48_9SPIT)

HSP 1 Score: 83.6 bits (205), Expect = 9.600e-13
Identity = 54/172 (31.40%), Postives = 79/172 (45.93%), Query Frame = 1
Query: 1954 GLWLCRSGCTSRGQWVPWEAQALNTAPASLAWERGRPGIVAAPAGLYRLIIGFFTLQPFTASVYVNGEPIFAMRQPAASXXXXXXXXXXPLLPQRMHEEGE--GLSSEDGDEVPLPSPPHLHASATTRYRHSAGEVLSASEVHFLALPARAEISVRYEGAARAQGFLGLQKL 2463
            G WL +SG    G  +PWE Q++NT P +  W+  +  I+    GLY +  GF++ +  T  + VNGE + +    ++                  H  G+  G+S                       RHSAG +   + V F+ALPARA IS+ Y G   A+GFLGL+KL
Sbjct:  694 GRWLWKSGELINGYAIPWEVQSVNTCPENFIWDEDKSLILTVAPGLYEITFGFYSNKKPTIQLLVNGEAVLSAVNSSSYVIH--------------HSSGKLKGMS-----------------------RHSAGNLAGLTLVDFIALPARARISLSYSGDLGAEGFLGLRKL 828          
BLAST of jgi.p|Trimin1|338565 vs. uniprot
Match: A0A1R2CSY1_9CILI (Uncharacterized protein n=1 Tax=Stentor coeruleus TaxID=5963 RepID=A0A1R2CSY1_9CILI)

HSP 1 Score: 82.8 bits (203), Expect = 1.250e-12
Identity = 50/170 (29.41%), Postives = 70/170 (41.18%), Query Frame = 1
Query: 1954 GLWLCRSGCTSRGQWVPWEAQALNTAPASLAWERGRPGIVAAPAGLYRLIIGFFTLQPFTASVYVNGEPIFAMRQPAASXXXXXXXXXXPLLPQRMHEEGEGLSSEDGDEVPLPSPPHLHASATTRYRHSAGEVLSASEVHFLALPARAEISVRYEGAARAQGFLGLQKL 2463
            G WL +SG    G  VPWE Q++NT P +  WE+    ++A   GLY +  GFFT +       VNGE +                         M  EG+                          RH  G ++ A+   ++ALPARA +S+ Y G    +GFL L+KL
Sbjct:  489 GRWLWKSGDVRAGYTVPWEIQSVNTCPENFIWEKDSSSVIAVTPGLYEVFFGFFTSKKPVVQFLVNGEAVIL----------------------DMSSEGKAWG-----------------------RHRDGNIIGATTTEYVALPARARLSITYSGPRIVEGFLSLRKL 613          
BLAST of jgi.p|Trimin1|338565 vs. uniprot
Match: A0A7S1DPW1_HEMAN (Hypothetical protein (Fragment) n=1 Tax=Hemiselmis andersenii TaxID=464988 RepID=A0A7S1DPW1_HEMAN)

HSP 1 Score: 77.4 bits (189), Expect = 1.650e-12
Identity = 53/157 (33.76%), Postives = 72/157 (45.86%), Query Frame = 1
Query: 1954 GLWLCRSGCTSRGQWVPWEAQALNTAPASLAWERGRPGIVAAPAGLYRLIIGFFTLQPFTASVYVNGEPIFAMRQPAASXXXXXXXXXXPLLPQRMHEEGEGLSSEDGDEVPLPSPPHLHASATTRYRHSAGEVLSASEVHFLALPARAEISVRYEG 2424
            G W+ +S  T +G  VPW  Q  N+ P++L WER R  IV A  GLY L IGFF+ +     V VN EP+  +  P                PQ +     G  S+ G                 RY +S+  V   +   FLALPA+A++S+ YEG
Sbjct:   70 GRWIWKSLRTKQGGLVPWNLQTANSDPSNLVWERDRTHIVCATPGLYELSIGFFSRRRPLVKVLVNSEPVLTVNTP----------------PQGVTHHAGGRVSQSG-----------------RYTNSS--VTGLTHHDFLALPAKAKVSLLYEG 191          
The following BLAST results are available for this feature:
BLAST of jgi.p|Trimin1|338565 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 16
Match NameE-valueIdentityDescription
A0A835YJ30_9STRA0.000e+0100.00Uncharacterized protein n=1 Tax=Tribonema minus Ta... [more]
A0A061SEB4_9CHLO7.850e-1632.94Uncharacterized protein n=1 Tax=Tetraselmis sp. GS... [more]
A0A1R2ARB7_9CILI2.080e-1430.00Uncharacterized protein n=2 Tax=Stentor coeruleus ... [more]
A0A7S3IAC5_9CILI4.420e-1431.18Hypothetical protein n=1 Tax=Fabrea salina TaxID=3... [more]
A0A8J8P4K0_HALGN1.830e-1329.24Uncharacterized protein n=1 Tax=Halteria grandinel... [more]
A0A7S3CST3_9SPIT2.010e-1330.36Hypothetical protein n=1 Tax=Strombidium rassoulza... [more]
A0A078AG74_STYLE9.450e-1329.24Uncharacterized protein n=1 Tax=Stylonychia lemnae... [more]
J9IZ48_9SPIT9.600e-1331.40Uncharacterized protein n=1 Tax=Oxytricha trifalla... [more]
A0A1R2CSY1_9CILI1.250e-1229.41Uncharacterized protein n=1 Tax=Stentor coeruleus ... [more]
A0A7S1DPW1_HEMAN1.650e-1233.76Hypothetical protein (Fragment) n=1 Tax=Hemiselmis... [more]

Pages

back to top
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
Contig_92contigContig_92:52989..61921 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Tribonema minus UTEX_B_31562021-06-17
Properties
Property NameValue
ProteomeIdTrimin1|338565|MIX47328_10_21
Max annot lvl2759|Eukaryota
EggNOG OGs2CY8Z@1|root,2S2UU@2759|Eukaryota
Evalue4.32e-15
Seed ortholog157072.XP_008877339.1
Hectar predicted targeting categoryother localisation
TranscriptId338887
TrackFilteredModels1
ProteinId338565
Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesTypePosition
jgi.p|Trimin1|338565gene_14576Tribonema minus UTEX_B_3156 geneContig_92 52989..61921 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
jgi.p|Trimin1|338565Trimin1|338565|MIX47328_10_21Tribonema minus UTEX_B_3156 polypeptideContig_92 52989..61921 -


The following exon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
exon_14576_14exon_14576_14Tribonema minus UTEX_B_3156 exonContig_92 52989..53001 -
exon_14576_13exon_14576_13Tribonema minus UTEX_B_3156 exonContig_92 54267..54445 -
exon_14576_12exon_14576_12Tribonema minus UTEX_B_3156 exonContig_92 54952..55218 -
exon_14576_11exon_14576_11Tribonema minus UTEX_B_3156 exonContig_92 55677..55955 -
exon_14576_10exon_14576_10Tribonema minus UTEX_B_3156 exonContig_92 56094..56376 -
exon_14576_9exon_14576_9Tribonema minus UTEX_B_3156 exonContig_92 56805..56968 -
exon_14576_8exon_14576_8Tribonema minus UTEX_B_3156 exonContig_92 57289..57360 -
exon_14576_7exon_14576_7Tribonema minus UTEX_B_3156 exonContig_92 57456..57643 -
exon_14576_6exon_14576_6Tribonema minus UTEX_B_3156 exonContig_92 57991..58204 -
exon_14576_5exon_14576_5Tribonema minus UTEX_B_3156 exonContig_92 58472..58555 -
exon_14576_4exon_14576_4Tribonema minus UTEX_B_3156 exonContig_92 58913..59137 -
exon_14576_3exon_14576_3Tribonema minus UTEX_B_3156 exonContig_92 60695..60988 -
exon_14576_2exon_14576_2Tribonema minus UTEX_B_3156 exonContig_92 61475..61597 -
exon_14576_1exon_14576_1Tribonema minus UTEX_B_3156 exonContig_92 61832..61921 -


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
CDS_14576CDS_14576Tribonema minus UTEX_B_3156 CDSContig_92 61832..61921 -


Sequences
The following sequences are available for this feature:

spliced messenger RNA

>mRNA_14576 ID=mRNA_14576|Name=jgi.p|Trimin1|338565|organism=Tribonema minus UTEX_B_3156 |type=mRNA|length=2475bp|location=Sequence derived from alignment at Contig_92:52989..61921- (Tribonema minus UTEX_B_3156 )|Notes=Excludes all bases but those of type(s): exon.  
ATGGGCGTGGATGTTGCTCTGGCGGCTCTGGAACGGTGCCTTACGGACGG
TGATCATGGAGGCGCAGGTGCTGGCTGGAAGAACATACAGACGCCTGTGA
GAAGCGCCTTTGAGGCTGCTGCAGAAGTCATGCGGCAGCAGTCGTTGGCG
CTGGCTGAGACGCGCCAGACTGTCAAGTCGCTGGAACGCACCCTCAAGTC
CATGAGAACAGAGGTGGCCGCGAAACTGGACAAGCACGCCAGCGCCGCCG
CCGCCGCGAACCGCGCCCTCGCAGACTCCCTGCGCCACAGCATCGCGGCG
CAGACGGAGGCGCGCGTAGCGGACGCGGAGGCGGCGGCGGCGGAGGCAGC
GGCGGCTGCGGCGGATGCTCAGCAGCGGGCGCGCGCGCTGGAGGCGACTG
GCGCTGCGGCGAGGGCAGAGGCGGCGGCGGCGCTGCAGGCCGTGAGGGCG
GACGTCGCGGGGCGCGCGACGCTGGCGGATCTGGACGGATACATACCCAG
GACTGAGGCGGCCACGCGCCAGGACCTCGCCGACGTCGAGGCGCAGCTGC
TGAGCAGGGCTGACGCGGCGGACACGGAGGCAGCGCTGCGCGCGCGCGTC
GCGTGGGCGGAACTGCCGCCGCTGCTGGCGGACAAGGCCGACGCGTCAGC
GCTCGACGCGCTGCGGCGCGACGCGCAGCTGAGCGCTGCTGCCGAGCTGG
GCGCCGCCGTCACGCCGCTGCGCGCCGCGCTGAAGGCGGACGCATCAGCA
CTCGACGCGCAGCTGAGCGCTGCTGCGGAGGCGGGCGCCGCCATCGCGCC
TTCGAGCGCCGCGCTGGCGCGCGCCGAAGCAGCTGCGGACGCCGCCGCCG
CGCGCGCCGCCGCCTCCACCTCGGCGCTGCGTGCGGAGATGCCTATGCTG
GCGGCGGCGGCGGCGGCGGAAGCTCTGAGGGAATCGAGTGCGGCGGCGGC
AGCAGCGGCGGTGACGCCTGCGCAGCTGGCGGCGGCGCGCGACGAGATGG
CGCGGCGCGCGGAGGCAGCGGCTGCGTGTGCGCGCACGGAGGCGGAGGGC
GCGGCAGCAGCGGCAATTGCGGCACTGCGTGCAGAGGTGTGCGACAGCCT
TGCGCGTTGGGAGGGCTGCACGGACGGGCTGCGGCGCTCACTGGAGGCCG
CCAAGGCGGAGCTAGTGGAGGTGCTCAATAAGAAGGCGTACCGCTCCGAC
GTGGCGCGCGCGCTGCAGGCCGCCAAGGCGGAGCTGCCTGAAGTGCTTAA
TGAGAAGGCCGCCCGCTCCGACGTGGCGCGCGCGCTGCGGGCGAAAGCGG
ACGTGGCAGCGCTTGAGCGCGTGGCGGCGGATGCTGCGGCGCGCGTGGGC
GCTGCGGAACTCGCGGAGCTGTCCTCGCGCGTGCGCGCCTCCATGACGCA
GCTGTCCGCCGACGTCAGCGGCGCGCGTGTGGACCTGCGCTCGGAGATGG
AGAGGCTCGGCCAGCGGCTGCGGCGCAAGGCGGACGCGGAAGAGCTCGCG
GCGCTGCGCAAAGAGCTGCTGCCGCTGAGCGCTGCTGCCGCCGGCAACCC
CGCCGCCAAGGCGACGCAGGCGGAGGTCGCCGCGATGGTGCGGCTGGCGG
TGCGGCAGCAGCAGAAGGGTGGTGGCGGCAGCGGCGGTGAGGCAGCAGCG
GCAGCGGCGGCAGCAGCGCTGCGCAAGGCTGCAGACGGTGGGGACTTGGT
GTCAGAGCGCGGCGCGCGGGACGTGGCGCGCGCGGAGGTGCGGCCGCTGG
CGACGCAACTCGAGGACCTCAGCGCGCGCGTTGCACGCCTCACAGCGACC
ACCACAGCCCTGCAGCAGCATGAACTTCAAGTCAAGGCCAGCGCCGCGGC
GGCAGCGGCGGCGGCGGCGGCAGCGGCGAGCCCGCTCGGGGGGAGCCCCG
CTAGGTCTGTGGGGATGGCGCATATGCCGCCGCCGCCGCCGCTGCTGCCT
CAGGGCCTGTGGCTGTGTCGCAGCGGGTGTACTTCGCGCGGGCAGTGGGT
GCCGTGGGAGGCGCAGGCTCTGAACACTGCCCCCGCAAGCCTCGCCTGGG
AGCGCGGCAGGCCCGGCATCGTCGCCGCACCGGCTGGCCTCTACCGCCTC
ATCATAGGCTTCTTCACGCTTCAACCGTTCACCGCGAGCGTATACGTCAA
TGGGGAGCCCATCTTTGCGATGCGCCAGCCTGCTGCGTCGTCGGCGGCGG
CGGCGGCGGCGGCGGCGGCGCCGCTGCTGCCGCAGCGCATGCACGAGGAA
GGCGAGGGGCTGAGCAGCGAGGATGGGGACGAGGTGCCGTTGCCGTCGCC
GCCGCACCTCCACGCAAGCGCCACGACGCGGTATCGGCACAGCGCGGGGG
AAGTTCTCAGTGCCAGCGAAGTTCACTTCCTGGCGCTGCCGGCGCGCGCC
GAGATCAGCGTGCGCTACGAGGGCGCAGCGCGCGCTCAGGGCTTTCTTGG
GCTGCAGAAGTTGCCCGGTGCCTGA
back to top

protein sequence of jgi.p|Trimin1|338565

>Trimin1|338565|MIX47328_10_21 ID=Trimin1|338565|MIX47328_10_21|Name=jgi.p|Trimin1|338565|organism=Tribonema minus UTEX_B_3156 |type=polypeptide|length=825bp
MGVDVALAALERCLTDGDHGGAGAGWKNIQTPVRSAFEAAAEVMRQQSLA
LAETRQTVKSLERTLKSMRTEVAAKLDKHASAAAAANRALADSLRHSIAA
QTEARVADAEAAAAEAAAAAADAQQRARALEATGAAARAEAAAALQAVRA
DVAGRATLADLDGYIPRTEAATRQDLADVEAQLLSRADAADTEAALRARV
AWAELPPLLADKADASALDALRRDAQLSAAAELGAAVTPLRAALKADASA
LDAQLSAAAEAGAAIAPSSAALARAEAAADAAAARAAASTSALRAEMPML
AAAAAAEALRESSAAAAAAAVTPAQLAAARDEMARRAEAAAACARTEAEG
AAAAAIAALRAEVCDSLARWEGCTDGLRRSLEAAKAELVEVLNKKAYRSD
VARALQAAKAELPEVLNEKAARSDVARALRAKADVAALERVAADAAARVG
AAELAELSSRVRASMTQLSADVSGARVDLRSEMERLGQRLRRKADAEELA
ALRKELLPLSAAAAGNPAAKATQAEVAAMVRLAVRQQQKGGGGSGGEAAA
AAAAAALRKAADGGDLVSERGARDVARAEVRPLATQLEDLSARVARLTAT
TTALQQHELQVKASAAAAAAAAAAAASPLGGSPARSVGMAHMPPPPPLLP
QGLWLCRSGCTSRGQWVPWEAQALNTAPASLAWERGRPGIVAAPAGLYRL
IIGFFTLQPFTASVYVNGEPIFAMRQPAASSAAAAAAAAAPLLPQRMHEE
GEGLSSEDGDEVPLPSPPHLHASATTRYRHSAGEVLSASEVHFLALPARA
EISVRYEGAARAQGFLGLQKLPGA*
back to top

mRNA from alignment at Contig_92:52989..61921-

Legend: polypeptideexonCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_14576 ID=mRNA_14576|Name=jgi.p|Trimin1|338565|organism=Tribonema minus UTEX_B_3156 |type=mRNA|length=8933bp|location=Sequence derived from alignment at Contig_92:52989..61921- (Tribonema minus UTEX_B_3156 )
ATGGGCGTGGATGTTGCTCTGGCGGCTCTGGAACGGTGCCTTACGGACGG TGATCATGGAGGCGCAGGTGCTGGCTGGAAGAACATACAGGTGAGCCCTC AAGCCTTAGAGCGTAGCCGACTGCGAGCACTTGTGATGTGCAACGCAATG CGTAGTAGAGCCTCGGAGCCAGGGCTGGCTGACAGCCCTATACGTCCGCC AGAAGCATATCTGAACGGCCATCCCAACCAGAGCGCAATGTTCGTCCAAA AACAAAGTTCCTGCCAACAGTGCCACCGCTGATGGCACCTAACTGCTGAT GTCAACATTGTTATACTGCTGCAGACGCCTGTGAGAAGCGCCTTTGAGGC TGCTGCAGAAGTCATGCGGCAGCAGTCGTTGGCGCTGGCTGAGACGCGCC AGACTGTCAAGTCGCTGGAACGCACCCTCAAGTCCATGAGAACAGAGGTG GGTGGCCTGCGCATTATGCGTAATCGCTCAAGTGCGGTGCTGCAAGTTCT GGATGTGGCGTCATTGATGCAGGTCTACCGCTAGGGCATGAAATCAGCAA ACAAGCAGGACTGTTTGCACACGTGCGATTCTCGCAAGCTATGGCATCTC CACGAGCACTCTTCGTCAGAACTAGGCATTTCAGCAGTTTCGGTGCATGC ATATGCATGCACTCGCTGCTTTATGCCGCATGAAGCATGAACGACTCGGC ACGACTCTATGCGGAGTTTGCCGATATGCCGATGGCTTACTGCAATCGCC AGCGGCAGCGCCGCCGTGTGTCAGCCGCGCCCCTCTCCGCCCAAGCCCGT TCGCGCGCTGCTGCAACAAACGCAGACACCAACCATCGACCGCCACTGCG CCACCTCCCCGTCCCCCTGGCACACCCTCTGCAACAACTCAAATTCTAAC CCTCACCTGACCCTTGCACACTCTTTGAAACAGGTGGCCGCGAAACTGGA CAAGCACGCCAGCGCCGCCGCCGCCGCGAACCGCGCCCTCGCAGACTCCC TGCGCCACAGCATCGCGGCGCAGACGGAGGCGCGCGTAGCGGACGCGGAG GCGGCGGCGGCGGAGGCAGCGGCGGCTGCGGCGGATGCTCAGCAGCGGGC GCGCGCGCTGGAGGCGACTGGCGCTGCGGCGAGGGCAGAGGCGGCGGCGG CGCTGCAGGCCGTGAGGGCGGACGTCGCGGGGCGCGCGACGCTGGCGGAT CTGGACGGATACATACCCAGGACTGAGGTACGTAGGTATGTTCAAAAGTT CGCATTTGAAGTTTTGTGGTAGCGTGAGATGCAGTGAGGGCCGACGTCGC GGGGCGCGCCACGCTGGCGGACCTGGATGGGTACATACCCAGGACTGAGG TATGCATGTATGTTTGAAAGTTTGTGCTTGAAGTTTTGTGGTAGGCACTA GTAGCGTGGCAGGCAGTGAGGGCGCATGCTGCGGGTCGCGCTACCGCTAG CGGGTGCGGACGAGTACTAGAACAGAGCCGAGGCGCGCTATGATGATGAG CGTGTGGTGTGCGCGTGTGCATGGATGTTTGAAAGTTCGTGTTTGAAGTT TGTGGTAGCGTGGCAGGCGGTGAGGGCGGATGCTGCGGGTTGCGCTCCGT AAGCGGGTCCGGATGGGTATGTGCTTACCCAGAGCTGAGGCGCGCAGGTG TATGATAAGCATGTGGTGTCTGCGCGGAAACACGCGCGTTAGGGTTAGGG TTACGGTTAGGGTTTAGGGTTAGGGTTAGGGTTTGCATGTCACCACAGCC GTGCGGCAGTAGCTGCTGTGTGCTTGTGTACATACTTGCCTTGAGCTGAG CATACGTAGGTAGAGTACATATGATGGCATTGCATTATGCAACAGAAATG CAAGACCCAGATTACGTAGGCATGCAGGCGCGAGTGATGCCTGCGCAGTG GGTGAAAGGGAAGGATTCTACCGGCGTGCATGGGGGTCGGTCTGGTACTT GTTCTCAGGTGGCGATGGTTACTCTGATACAGTACCTGAAGAACATGAAT CCATCCCAAGCAGTGCAGAAGCTCTGCAGTTTAGTATGGTGCACTGTTGT AATGCACTCCCGCCAGGGCCAGCTGCAGTGAATCAGTGCCAACTTCATGG ATCACACTGAGCTAGTCAACGTTCACCAAAACCGTACGCACAGCGCAGAT ATGCCCACCCAGTTGCCACGCCATTCTGCATGAGTACAAGCACCTCCTGG GACCTCGCGATTTTCTGGTCCTGAACGGTGCCTTCACGCATCTGGATGCA TCACATTCGCATGCACCTATACCTAGGCCTTTCTATACTTACCATGCTTC TATCTCTTGACCACATGCACCATACCTACACGTCTTGCATGTGCTCCCCC CATCTGTAAACACATTATCACGTTTATTTTGACATGGGGCTCATTGGGAT TTATCAGCAAGTGGAACACAAAGACCTACCCCCCCCTCCCCCCCCGAAAC CCCCCTACACACGCAGTTGTACCTGTACCGACCTACACTTGTTCCTCTTG ACCGTATGCACAATACCTTTACCTCTTGCATGTACTCCGCCCCCCGACGT CCCCACCCACCCCCCTGAAACCGCCCTACACACGCACAGTGGCAGGTGTG CCCACCGAGTTGCCACGCCATTTCCGCTACCCTACAGGAGTACAAGCACC TCCTGGTACCTTGCGTTGTTCCTTCCTATACTTTCGCGCATGCAGATCCA TCACATATACTCATCTCAGCCGTGCCTTCCCCCCGCCCCCTACCCCCCAC ACACCACGAAACCCCCCTACACCCCCCCATGCAGGCGGCCACGCGCCAGG ACCTCGCCGACGTCGAGGCGCAGCTGCTGAGCAGGGCTGACGCGGCGGAC ACGGAGGCAGCGCTGCGCGCGCGCGTCGCGTGGGCGGAACTGCCGCCGCT GCTGGCGGACAAGGCCGACGCGTCAGCGCTCGACGCGCTGCGGCGCGACG CGCAGCTGAGCGCTGCTGCCGAGCTGGGCGCCGCCGTCACGCCGCTGCGC GCCGCGCTGGTGAGCTGGGAGAGCTAGTCTACTGCGGATTATTGTCGTTT CCGTGTGTGCGTATCTTCAAGTGCATCTTCAAGTGTGTCTTCGAAGCCTG CGCCGATGAAGTTGGAACCGGCAGCGTGCCGAGGTCGCGGGTTGGTGCTG TCGGCGAATGTCTGGCACGCGCTGATGGCGATTTCCGCTCTCAGACAGCA GCTGCGGGTGACGGGCTGATCGTTGACGAAGGCGTACAATGTCGAGTCGC CTGTTTCGGTCCCCTGCGCCCAAGCCGTCTGTTGTAGTAGCCACTAGTAT GGCGTTGAATGGCTGGCGGTTGATCAGTCCTGCAGCAGCTGCTGATGCTG CAGTCAAATGGCTCAGAAGGCGGACGCATCAGCACTCGACGCGCAGCTGA GCGCTGCTGCGGAGGCGGGCGCCGCCATCGCGCCTTCGAGCGCCGCGCTG GTGAGTCGCGAGAGCTAGTACGAATTCTTGGTCGTTTTCGTGTGCATCTT CAAGCGAGTCCTTAAGGCCGTGGGGCAGCCGCCTCATGCGACCATCTGCC ACTTCAATTGCTACTTCAAGTGCTTCAAATCTGCCGGCCCGCGCGCGTGC TGCCATTGGCAGCCGTGTGGCTGCACCTTACTCGTCTTTTTTGAAAAAAG TCAACCGCTACACCTATTGTGCTTTCACGTTGCAGCACTGACGCACCGCC ACATATGTCTCCTGCAGGCGCGCGCCGAAGCAGCTGCGGACGCCGCCGCC GCGCGCGCCGCCGCCTCCACCTCGGCGCTGCGTGCGGAGATGCCTATGCT GGCGGCGGCGGCGGCGGCGGAAGCTCTGAGGGAATCGAGTGCGGCGGCGG CAGCAGCGGCGGTGACGCCTGCGCAGCTGGCGGCGGCGCGCGACGAGATG GCGCGGCGCGCGGAGGCAGCGGCTGCGTGTGGTGCGTCCGTTTTGATGTT GTTGTTGAAGTGTTCAATCTTCAAGTGCTTCTTCAAGTGTATCTCCAAAT TGCAGCTTCAAGTGCTTGAAGGCGGCCGTCTGGTGCACAGTATGTTCGTA ATGCTCTATTGAACTCAGGTATGAGCAGGCTGGTCATAGTCATACGTACT ATCCCTAACCCCGTACCCTCATCATGGTCCACATTGTCACACTGGCACGT GCACCGTCAGACGCCCTTGTCGAAATCAGCTTTGGCGTGGGATCACTCCG CAAACCTGTCTCAAAAACAGCAGCCGGCCGCTTTTGCCTCACGTCGACCC TGCGTGCGCATCGCCGCCGCCGCCGCAGCGCGCACGGAGGCGGAGGGCGC GGCAGCAGCGGCAATTGCGGCACTGCGTGCAGAGGTGTGCGACAGCCTTG CGCGTTGGGAGGGCTGCACGGACGGGCTGCGGCGCTCACTGGAGGCCGCC AAGGCGGAGCTAGTGGAGGTGCTCAATAAGAAGGCGTACCGCTCCGACGT GGCGCGCGCGCTGCAGGTGTGTATCTTAATGAGCAGCAGCGTGGCACGTG CTTGCAAGCACTTCAAAGTTTAGTTGTTGAAGTTTTTATGCTGTCTGGGC GCTCACTGGAGGCCGCCAAGGCGGAGCTGCCTGAAGTGCTTAATGAGAAG GCCGCCCGCTCCGACGTGGCGCGCGCGCTGCGGGTATGTAGGTATGCTGT CAGGTTTTTCTGAGCAGTGTGACATGCGAGTTTTTGCAAGTCCTTCAAAC TTTATTGAACGCCAGGACTTGCAGAGCAGCAATGTGGCTCGCACTAGTGG TACTTGCAAGCATTTCAAGTGTTGAAGTTGTTTTGTGCTGTCTGGGTCTC TCTTGCCAGTGGAGCACGCATGCGCAACAGGCACTGTGAGTGCGCGTGCG CGCGGCAGAGCTCGCGGAGCTGTTCTCAAAAAGCACACGAGCATACGCGT TTCACCGCTAACGTGCATGAGCGCTTGCCCCCCCCCCCCCCTTCGCTGCG CAGGCGAAAGCGGACGTGGCAGCGCTTGAGCGCGTGGCGGCGGATGCTGC GGCGCGCGTGGGCGCTGCGGAACTCGCGGAGCTGTCCTCGCGCGTGCGCG CCTCCATGACGCAGCTGTCCGCCGACGTCAGCGGCGCGCGTGTGGACCTG CGCTCGGAGATGGAGAGGTATGTAAGTAGGATGAACGGGGAGGTACGGTA GGTAGGTAGGTTGAGACACCCCCCCCCCCCCCCCCCGGCGCTCTCCAGTG CGGACTCGGTATTTGGACCCACATCTCAACGAGTACCGCATCTGTTCTCG TCTATGTTGTCCGCGTTGCCGCGCAGTTGCGGGGTGAGTCACGTTTCCAT CCCTGGAACCAGGTGGACCTCGGAGGGGTTCCCAGGTTAGGGTTAGGTTC AAGGTTAGGGTTAACGTTACCAAGCAATACGAGCGCCTACCGCCGCGCCC TGACGTGCGCGCGTGCGCCCTTGTCTGCCCCGTCAGGCTCGGCCAGCGGC TGCGGCGCTCAATTTAGAGTTAGGGTTAGGGTTACCAAATAAACACGGAA TGCAAGCGCGCGCCCCTATTGTCAATCTACCCCTACCTTCGCCAGGCTCG GCCAGCGGCTGCGGCGCAAGGCGGACGCGGAAGAGCTCGCGGCGCTGCGC AAAGAGCTGCTGCCGCTGAGCGCTGCTGCCGCCGGCAACCCCGCCGCCAA GGCGACGCAGGCGGAGGTCGCCGCGATGGTGCGGCTGGCGGTGCGGCAGC AGCAGAAGGGTGGTGGCGGCAGCGGCGGTGAGGCAGCAGCGGCAGCGGCG GCAGCAGCGCTGCGCAAGGCTGCAGACGGTGGGGACTTGGTGTCAGAGCG CGGCGCGCGGGACGTGGCGCGCGCGGAGGTGAGACCTAGGACTAGGGTTT GAAGTGTGATGCGTTGGTGAGTGCCCTGCCCCTAGGGTATGCACTGAGTA TTGGACCATCTCATATTCCAACAGATACTTGTGATGTCGGCTCATGCCTA CTGCTGTATACCTCAGGTGCGGCCGCTGGCGACGCAACTCGAGGACCTCA GCGCGCGCGTTGCACGCCTCACAGCGACCACCACAGCCCTGCAGCAGCAT GAACTTCAAGTCAAGGCCAGCGCCGCGGCGGCAGCGGCGGCGGCGGCGGC AGCGGCGAGCCCGCTCGGGGGGAGCCCCGCTAGGTCTGTGGGGATGGCGC ATATGCCGCCGCCGCCGCCGCTGCTGCCTCAGGGCCTGTGGCTGTGTCGC AGCGGGTGTACTTCGCGCGGGCAGTGGGTGCCGTGGGAGGCGCAGGTGCG TCAACTTCAACTATGCCGCATGACAACGCTGATCTTCAAGTGCCTGCAGT GGTCTGTTCCACCGGCTGTGCTCCCCGCTTGTGTGAAGTTGGTCATGAGC ATGATATGGCGGCAGCTGCGAGCGCGCTCGACTGACACCCTAGCGGACGC TGCGCATGTGCTGTGGGTGGGGCATGATGTTCTGCGTCCGCAAGACTTGT GTTTTTTTGTCAGTTGAAGGCATCCTACATCGTTCAGGCAGTGGAGGTCA TGTGAGGGTCACCCGTGACATGCGCTCTTGTCCATCTGCACGCGCAAATG CGCTCTGCCTCCTCTTCTGTGTCCGCATCTCCTTGTTCTGTGATGATGAT GCAACTCATTCATTCTCGCTCGAGCGGAAAAAAAAAGTGTGTGCGTACAC GCTGCTAACCCTAACCCTGATCCTGCGCAACTCTGTGCGCACGCACTGCT CAGGCTCTGAACACTGCCCCCGCAAGCCTCGCCTGGGAGCGCGGCAGGCC CGGCATCGTCGCCGCACCGGCTGGCCTCTACCGCCTCATCATAGGCTTCT TCACGCTTCAACCGTTCACCGCGAGCGTATACGTCAATGGGGAGCCCATC TTTGCGATGCGCCAGCCTGCTGCGTCGTCGGCGGCGGCGGCGGCGGCGGC GGCGGCGCCGCTGCTGCCGCAGCGCATGCACGAGGAAGGCGAGGGGCTGA GCAGCGAGGATGGGGACGAGGTGCGTCACCACCTGTTGAATTTTGATGTT GAAGTTGAGGTTTATGCTGTGAGTGGTGGGCGTATCTTGTGTGCAGGAGA CAGCAGCAGCAGTCGTTGTGGTCTTGTCGCAGTGAGTGCTCATGTTGAGG CACCCTGCTGTGTCAATTGTGTGATTGCACATGAGGCGGGATTACGAGGG AGGCCGCCTGCGTGTACTTCAACTTGAAGCCGTTAAAGTATGCGCTAACT GCTGCAGCATGTGTGGACAAAGCAGTATGTCACAATTGAAGAGGTTGGAC ACATTTCGCGCCTGGTTACAGACAGCGCCAGTGACACTGCACCTTGGAAT TAGTACGTGGCATCGCAGCAGGCGCAAACTTCGATGCACCAGCATGCTCA CTCTGTGGCGCCGATGGCGCACAAACGTCATTTGCCCTGGCTCCACACAA TCAATCGGGTTAGACACCGATGCACAAAGCAAATATTCAGCACTTCAAAA ACACGCTGGTTTCTGGTTGAATGCAGGTGCCGTTGCCGTCGCCGCCGCAC CTCCACGCAAGCGCCACGACGCGGTATCGGCACAGCGCGGGGGAAGTTCT CAGTGCCAGCGAAGTTCACTTCCTGGCGCTGCCGGCGCGCGCCGAGATCA GCGTGCGCTACGAGGGCGCAGCGCGCGCTCAGGGCTTTCTTGGGCTGCAG AAGTTGTAGTTGATGCTTCTAAGGACATCTATTGAGGACGCACGCTTGAG AGCTTGTTGAATCTGCCAGCAAAAACCTGCTGGTGGGTGTGCTGCGCTGC GGCTTAGTGCCTGCTTGTGCTGCGGAGCATGTGCGTTGTTTATGCTTGTT GTAATCTGTAATGAGTAATGCGAAAGCGTGGAGGGTTGCATGGGAGCCGG CGCGACTGCAAATGTGAAAAATATTGAACTCCCGGCTCATTGCATGCTGC CGGCTCAAGTGGCATCACCGCGGCATTCATACCTGCACCTGATGCAAGCT CAACTCGGATGACAGAATGCATGCTTTCATCAGATTTTGTGTGCGGCAAG CGCAGACTCTTTTCAACTTTGCGCGCATGGGTCTGTTTGCTCAGTTGGTG CAGCCAGCATCTGTCATGCTCCCAAGCCTGTACTGTACGCCCTACTCTGA GCAGCTTGCATTCCACAGCTTCTTGGGGCCTTCATTAGTATGCAGTTGTC AGGATTCATCACGATCAACGAGCATACATGCAACCCCTTCGGAGCCTACA GTGGTGGAAATATGTGGCACGCCTATCCGGGTACATTGAACAGCACAACA GCACCAAGCCTTGAACACATCACTGAGATGGCAACAAATAACATAGCAGA AATGAGGCACATGTCATGTCGCATTGCCTTGTACATCGCAGTTGCCGTCT TTGGCATTGAAGAATTGTCACCCGCACTTCACCTTCAACGAGATGCACAT GCATGCAAAATTGTCCATTGTTTGGGGGCATTGGAATGGATGTAAGCTTT GGCGGCGATTCTTGTAGCACATGGCGCAGCCGTCGCCGATGGTGCACATT TGATATCCCCATGGGGTGCTGAGCGCAGCTGCAGCCCGCATGCACGCGTC TCCGTCGCTGCAGCATGACACAGCGTAGATGCCCTTTTTGAACAGCTGAA CACCGCACGCACACTTCCACACAGCGCGACACCCGATGTTTGAGCGCTGT TGCGTGGTACTCAAGTATCTCGCCATCATCTGCACAAGCTGCTGCTGCAG CTGGCATCTCTTCAATCGATTCCAACGGCGTCTTCACAGCCCTTGTAGCC GCAGCTGTGGAGCGCTGCCGCTGCACATGGTTTTGGCGGCGGCGCAGCTG CACAGGTCGCACTGCTTGAGTTTCTAGGGCTGCAGCTTTGTGTTATGCTG GTGCAATGATGGCGATGCACCCACAGATACATCGCGCGACGCCATCGCTG CTCCTGCCGCCATGCTGCAGGCCCGGTGCCTGA
back to top

Coding sequence (CDS) from alignment at Contig_92:52989..61921-

>mRNA_14576 ID=mRNA_14576|Name=jgi.p|Trimin1|338565|organism=Tribonema minus UTEX_B_3156 |type=CDS|length=2475bp|location=Sequence derived from alignment at Contig_92:52989..61921- (Tribonema minus UTEX_B_3156 )
ATGGGCGTGGATGTTGCTCTGGCGGCTCTGGAACGGTGCCTTACGGACGG
TGATCATGGAGGCGCAGGTGCTGGCTGGAAGAACATACAGACGCCTGTGA
GAAGCGCCTTTGAGGCTGCTGCAGAAGTCATGCGGCAGCAGTCGTTGGCG
CTGGCTGAGACGCGCCAGACTGTCAAGTCGCTGGAACGCACCCTCAAGTC
CATGAGAACAGAGGTGGCCGCGAAACTGGACAAGCACGCCAGCGCCGCCG
CCGCCGCGAACCGCGCCCTCGCAGACTCCCTGCGCCACAGCATCGCGGCG
CAGACGGAGGCGCGCGTAGCGGACGCGGAGGCGGCGGCGGCGGAGGCAGC
GGCGGCTGCGGCGGATGCTCAGCAGCGGGCGCGCGCGCTGGAGGCGACTG
GCGCTGCGGCGAGGGCAGAGGCGGCGGCGGCGCTGCAGGCCGTGAGGGCG
GACGTCGCGGGGCGCGCGACGCTGGCGGATCTGGACGGATACATACCCAG
GACTGAGGCGGCCACGCGCCAGGACCTCGCCGACGTCGAGGCGCAGCTGC
TGAGCAGGGCTGACGCGGCGGACACGGAGGCAGCGCTGCGCGCGCGCGTC
GCGTGGGCGGAACTGCCGCCGCTGCTGGCGGACAAGGCCGACGCGTCAGC
GCTCGACGCGCTGCGGCGCGACGCGCAGCTGAGCGCTGCTGCCGAGCTGG
GCGCCGCCGTCACGCCGCTGCGCGCCGCGCTGAAGGCGGACGCATCAGCA
CTCGACGCGCAGCTGAGCGCTGCTGCGGAGGCGGGCGCCGCCATCGCGCC
TTCGAGCGCCGCGCTGGCGCGCGCCGAAGCAGCTGCGGACGCCGCCGCCG
CGCGCGCCGCCGCCTCCACCTCGGCGCTGCGTGCGGAGATGCCTATGCTG
GCGGCGGCGGCGGCGGCGGAAGCTCTGAGGGAATCGAGTGCGGCGGCGGC
AGCAGCGGCGGTGACGCCTGCGCAGCTGGCGGCGGCGCGCGACGAGATGG
CGCGGCGCGCGGAGGCAGCGGCTGCGTGTGCGCGCACGGAGGCGGAGGGC
GCGGCAGCAGCGGCAATTGCGGCACTGCGTGCAGAGGTGTGCGACAGCCT
TGCGCGTTGGGAGGGCTGCACGGACGGGCTGCGGCGCTCACTGGAGGCCG
CCAAGGCGGAGCTAGTGGAGGTGCTCAATAAGAAGGCGTACCGCTCCGAC
GTGGCGCGCGCGCTGCAGGCCGCCAAGGCGGAGCTGCCTGAAGTGCTTAA
TGAGAAGGCCGCCCGCTCCGACGTGGCGCGCGCGCTGCGGGCGAAAGCGG
ACGTGGCAGCGCTTGAGCGCGTGGCGGCGGATGCTGCGGCGCGCGTGGGC
GCTGCGGAACTCGCGGAGCTGTCCTCGCGCGTGCGCGCCTCCATGACGCA
GCTGTCCGCCGACGTCAGCGGCGCGCGTGTGGACCTGCGCTCGGAGATGG
AGAGGCTCGGCCAGCGGCTGCGGCGCAAGGCGGACGCGGAAGAGCTCGCG
GCGCTGCGCAAAGAGCTGCTGCCGCTGAGCGCTGCTGCCGCCGGCAACCC
CGCCGCCAAGGCGACGCAGGCGGAGGTCGCCGCGATGGTGCGGCTGGCGG
TGCGGCAGCAGCAGAAGGGTGGTGGCGGCAGCGGCGGTGAGGCAGCAGCG
GCAGCGGCGGCAGCAGCGCTGCGCAAGGCTGCAGACGGTGGGGACTTGGT
GTCAGAGCGCGGCGCGCGGGACGTGGCGCGCGCGGAGGTGCGGCCGCTGG
CGACGCAACTCGAGGACCTCAGCGCGCGCGTTGCACGCCTCACAGCGACC
ACCACAGCCCTGCAGCAGCATGAACTTCAAGTCAAGGCCAGCGCCGCGGC
GGCAGCGGCGGCGGCGGCGGCAGCGGCGAGCCCGCTCGGGGGGAGCCCCG
CTAGGTCTGTGGGGATGGCGCATATGCCGCCGCCGCCGCCGCTGCTGCCT
CAGGGCCTGTGGCTGTGTCGCAGCGGGTGTACTTCGCGCGGGCAGTGGGT
GCCGTGGGAGGCGCAGGCTCTGAACACTGCCCCCGCAAGCCTCGCCTGGG
AGCGCGGCAGGCCCGGCATCGTCGCCGCACCGGCTGGCCTCTACCGCCTC
ATCATAGGCTTCTTCACGCTTCAACCGTTCACCGCGAGCGTATACGTCAA
TGGGGAGCCCATCTTTGCGATGCGCCAGCCTGCTGCGTCGTCGGCGGCGG
CGGCGGCGGCGGCGGCGGCGCCGCTGCTGCCGCAGCGCATGCACGAGGAA
GGCGAGGGGCTGAGCAGCGAGGATGGGGACGAGGTGCCGTTGCCGTCGCC
GCCGCACCTCCACGCAAGCGCCACGACGCGGTATCGGCACAGCGCGGGGG
AAGTTCTCAGTGCCAGCGAAGTTCACTTCCTGGCGCTGCCGGCGCGCGCC
GAGATCAGCGTGCGCTACGAGGGCGCAGCGCGCGCTCAGGGCTTTCTTGG
GCTGCAGAAGTTGCCCGGTGCCTGA
back to top