mRNA_14574 (mRNA) Tribonema minus UTEX_B_3156

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
Namejgi.p|Trimin1|177248
Unique NamemRNA_14574
TypemRNA
OrganismTribonema minus UTEX_B_3156 (Tribonema minus UTEX_B_3156 )
Homology
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BLAST of jgi.p|Trimin1|177248 vs. uniprot
Match: A0A835ZBB5_9STRA (Uncharacterized protein n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A835ZBB5_9STRA)

HSP 1 Score: 238 bits (608), Expect = 1.520e-77
Identity = 186/186 (100.00%), Postives = 186/186 (100.00%), Query Frame = 1 
Query:    1 MTPXXXXXXXXXXXXCSCAAGHYCPAGTASPSQYPCPAGTYSDATDIVSAAQCAQCPARFTCAXXXXXXXXXXXXXXXXXXXGSAVAAPCAPGTWSARTALAAAAECDAXXXXXXXXXXXXXXXXXXXGYYCPLGSSSATXXXXXXXXXXASASIYLVGQCTTCPTGSYCPQVRLSDCHSRHFRLY 558
            MTPXXXXXXXXXXXXCSCAAGHYCPAGTASPSQYPCPAGTYSDATDIVSAAQCAQCPARFTCAXXXXXXXXXXXXXXXXXXXGSAVAAPCAPGTWSARTALAAAAECDAXXXXXXXXXXXXXXXXXXXGYYCPLGSSSATXXXXXXXXXXASASIYLVGQCTTCPTGSYCPQVRLSDCHSRHFRLY
Sbjct:    1 MTPXXXXXXXXXXXXCSCAAGHYCPAGTASPSQYPCPAGTYSDATDIVSAAQCAQCPARFTCAXXXXXXXXXXXXXXXXXXXGSAVAAPCAPGTWSARTALAAAAECDAXXXXXXXXXXXXXXXXXXXGYYCPLGSSSATXXXXXXXXXXASASIYLVGQCTTCPTGSYCPQVRLSDCHSRHFRLY 186
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BLAST of jgi.p|Trimin1|177248 vs. uniprot
Match: D8LR26_ECTSI (Uncharacterized protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D8LR26_ECTSI)

HSP 1 Score: 96.3 bits (238), Expect = 1.060e-19
Identity = 76/159 (47.80%), Postives = 92/159 (57.86%), Query Frame = 1 
Query:   52 CAAGHYCPAGTASPSQYPCPAGTYSDATDIVSAAQCAQCPARFTCAXXXXXXXXXXXXXXXXXXXGSAVAA--PCAPGTWSARTALAAAAECDAXXXXXXXXXXXXXXXXXXXG--YYCPLGSSSATXXXXXXXXXXASASIYLVGQCTTCPTGSYCPQ 516
            C  GHYCP GT+   QYPCPAGTY+D T++ SA QC+ CP RF C                     +      PC+ G+++ RT LAA +EC  XXXXXXXXXXXXXXXXXXX   YYCPL +++AT           S S+YL  QC  CP G YCP+
Sbjct: 1305 CDPGHYCPKGTSYADQYPCPAGTYTDETNLTSATQCSDCPERFACFSGSTSNDWSPCGEGHWCPENTPTRTSYPCSAGSFTNRTDLAADSECXXXXXXXXXXXXXXXXXXXXXXXXYYCPLRTAAATDYPCPAGTFSISTSLYLEAQCEDCPPGYYCPE 1463
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BLAST of jgi.p|Trimin1|177248 vs. uniprot
Match: A0A6H5KV20_9PHAE (Ephrin_rec_like domain-containing protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KV20_9PHAE)

HSP 1 Score: 83.6 bits (205), Expect = 2.600e-15
Identity = 59/178 (33.15%), Postives = 75/178 (42.13%), Query Frame = 1 
Query:   52 CAAGHYCPAGTASPSQYPCPAGTYSDATDIVSAAQCAQ-------------------CPARFTCAXXXXXXXXXXXXXXXXXXXGSAVAA--PCAPGTWSARTALAAAAECDAXXXXXXXXXXXXXXXXXXXG--YYCPLGSSSATXXXXXXXXXXASASIYLVGQCTTCPTGSYCPQ 516
            C  GHYCP GT+   QYPCPAGTY+D T++ SA QC+                    CP RF C                     +      PC+ G+++ RT LAA +EC                   XX   YYCPL +++AT           S S+YL  QC  CP G YCP+
Sbjct: 1316 CDPGHYCPKGTSYADQYPCPAGTYTDETNLTSATQCSMQQNKRVVNIQLYSIEHYSDCPERFACFSGSTSNDWSPCGEGHWCPENTPTRTSYPCSAGSFTNRTDLAADSECYPCPLGEWCGGSGSPEPDGXXXXXYYCPLRTAAATDFPCPAGTFSDSTSLYLEAQCEDCPPGFYCPE 1493
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BLAST of jgi.p|Trimin1|177248 vs. uniprot
Match: F2TZI1_SALR5 (Ephrin_rec_like domain-containing protein n=1 Tax=Salpingoeca rosetta (strain ATCC 50818 / BSB-021) TaxID=946362 RepID=F2TZI1_SALR5)

HSP 1 Score: 76.6 bits (187), Expect = 6.790e-13
Identity = 48/160 (30.00%), Postives = 65/160 (40.62%), Query Frame = 1 
Query:   52 CAAGHYCPAGTASPSQYPCPAGTYSDATDIVSAAQCAQCPARFTCAXXXXXXXXXXXXXXXXXXXGSAVAAP----CAPGTWSARTALAAAAECDAXXXXXXXXXXXXXXXXXXX-GYYCPLGSSSATXXXXXXXXXXASASIYLVGQCTTCPTGSYCPQ 516
            C  GHYCP GT + +QYPCP GTY+D+T + +A +C+ CPA   C                     +    P    CA GT++AR+ L AA+EC                      GYYC  G+ +                 YL  +C  C  G YC +
Sbjct: 1126 CEQGHYCPRGTVTSTQYPCPPGTYTDSTSLGAAEECSPCPAGSACGWATGYTDNVPLSCSQGHYCPTGTPTPTSFPCAAGTYTARSNLTAASECSTCPERYYCDGGEGSPTDWCPSGYYCLAGTQAFFQHPCPAGTYQPEIGSYLESECFNCTVGHYCEE 1285
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BLAST of jgi.p|Trimin1|177248 vs. uniprot
Match: A0A8J6AXK8_9EUKA (Chitin-binding type-2 domain (Fragment) n=1 Tax=Carpediemonas membranifera TaxID=201153 RepID=A0A8J6AXK8_9EUKA)

HSP 1 Score: 72.0 bits (175), Expect = 2.660e-11
Identity = 56/128 (43.75%), Postives = 71/128 (55.47%), Query Frame = 1 
Query:   49 SCAAGHYCPAGTASPSQYPCPAGTYSDATDIVSAAQCAQCPARFTC---AXXXXXXXXXXXXXXXXXXXGSAVAAPCAPGTWSARTALAAAAECDAXXXXXXXXXXXXXXXXXXX-GYYCPLGSSSAT 420
            +CA GHYCPAGTAS ++YPCPAGTY+D+T +   +QC  CP  + C            XXXXXXXXXXX S V  PC  GT++ +T   +  +C A                    GYYCPLG+ S+T
Sbjct: 1477 ACAPGHYCPAGTASTTEYPCPAGTYTDSTTLTDFSQCTICPEGYYCLSGTGGTSPPTTXXXXXXXXXXXXSPVQWPCPAGTYNDQTGQISMDDCVACPEGSYCLEASTDPTATCPAGYYCPLGTQSST 1604
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BLAST of jgi.p|Trimin1|177248 vs. uniprot
Match: A0A6P8I2Z0_ACTTE (uncharacterized protein LOC116295506 n=1 Tax=Actinia tenebrosa TaxID=6105 RepID=A0A6P8I2Z0_ACTTE)

HSP 1 Score: 66.6 bits (161), Expect = 1.940e-9
Identity = 26/45 (57.78%), Postives = 35/45 (77.78%), Query Frame = 1 
Query:   52 CAAGHYCPAGTASPSQYPCPAGTYSDATDIVSAAQCAQCPARFTC 186
            C  GHYCPAGT SP+++PCP GTY++++D+  A+QC  CP RF C
Sbjct: 1114 CRQGHYCPAGTPSPTKFPCPPGTYTNSSDLYDASQCTPCPERFYC 1158
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BLAST of jgi.p|Trimin1|177248 vs. uniprot
Match: A0A1V9ZAJ1_9STRA (Ephrin_rec_like domain-containing protein n=1 Tax=Achlya hypogyna TaxID=1202772 RepID=A0A1V9ZAJ1_9STRA)

HSP 1 Score: 65.9 bits (159), Expect = 3.350e-9
Identity = 36/94 (38.30%), Postives = 46/94 (48.94%), Query Frame = 1 
Query:   52 CAAGHYCPAGTASPSQYPCPAGTYSDATDIVSAAQCAQCPARFTCAXXXXXXXXXXXXXXXXXXXGSAVAAP----CAPGTWSARTALAAAAEC 321
            C+ G+YCP GT + + YPCPAGTY+DA D+V    C  CP RF C                     +    P    C PG WS   +LA+A+EC
Sbjct:  915 CSPGYYCPVGTVAATSYPCPAGTYTDAIDLVRIDDCTICPQRFACLSGTGNNVLQMLPCAAGFFCPNGTEFPRQYPCPPGYWSPVGSLASASEC 1008
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BLAST of jgi.p|Trimin1|177248 vs. uniprot
Match: A0A8B7D7P7_HYDVU (uncharacterized protein LOC100200478 n=1 Tax=Hydra vulgaris TaxID=6087 RepID=A0A8B7D7P7_HYDVU)

HSP 1 Score: 64.7 bits (156), Expect = 8.870e-9
Identity = 47/156 (30.13%), Postives = 63/156 (40.38%), Query Frame = 1 
Query:   49 SCAAGHYCPAGTASPSQYPCPAGTYSDATDIVSAAQCAQCPARFTCAXXXXXXXXXXXXXXXXXXXG-SAVAAPCAPGTWSARTALAAAAECDAXXXXXXXXXXXXXXXXXXXGYYCPLGSSSATXXXXXXXXXXASASIYLVGQCTTCPTGSYCP 513
            +C  G++CP GT  P+QYPCPAG++S+ T++ + + C  CP  + C                      SA   PCA GT+S RT       C+                    G YCP GSS+ T                 +G CT C  G YCP
Sbjct: 1768 ACGKGYWCPLGTQYPTQYPCPAGSWSNLTNLYTQSACYVCPKGWFCLQNASSPTGICPTGHYCPSGTQSATQFPCAAGTYSNRTGNTRWEVCE----------------QCLEGNYCPQGSSNPTPCPQGKYRPMLKGKS--LGDCTICTGGFYCP 1905
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BLAST of jgi.p|Trimin1|177248 vs. uniprot
Match: UPI001F5EFF5F (uncharacterized protein LOC100200478 isoform X1 n=5 Tax=Hydra vulgaris TaxID=6087 RepID=UPI001F5EFF5F)

HSP 1 Score: 64.7 bits (156), Expect = 8.920e-9
Identity = 47/156 (30.13%), Postives = 63/156 (40.38%), Query Frame = 1 
Query:   49 SCAAGHYCPAGTASPSQYPCPAGTYSDATDIVSAAQCAQCPARFTCAXXXXXXXXXXXXXXXXXXXG-SAVAAPCAPGTWSARTALAAAAECDAXXXXXXXXXXXXXXXXXXXGYYCPLGSSSATXXXXXXXXXXASASIYLVGQCTTCPTGSYCP 513
            +C  G++CP GT  P+QYPCPAG++S+ T++ + + C  CP  + C                      SA   PCA GT+S RT       C+                    G YCP GSS+ T                 +G CT C  G YCP
Sbjct: 2156 ACGKGYWCPLGTQYPTQYPCPAGSWSNLTNLYTQSACYVCPKGWFCLQNASSPTGICPTGHYCPSGTQSATQFPCAAGTYSNRTGNTRWEVCE----------------QCLEGNYCPQGSSNPTPCPQGKYRPMLKGKS--LGDCTICTGGFYCP 2293
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BLAST of jgi.p|Trimin1|177248 vs. uniprot
Match: A0A077ZPK8_STYLE (Cast multi-domain protein n=1 Tax=Stylonychia lemnae TaxID=5949 RepID=A0A077ZPK8_STYLE)

HSP 1 Score: 63.9 bits (154), Expect = 1.480e-8
Identity = 27/45 (60.00%), Postives = 34/45 (75.56%), Query Frame = 1 
Query:   52 CAAGHYCPAGTASPSQYPCPAGTYSDATDIVSAAQCAQCPARFTC 186
            CA GHYCPA T+ P+Q+PCPAG YSD  +I S++QC  CP +F C
Sbjct:  973 CAHGHYCPAKTSFPNQFPCPAGKYSDDINITSSSQCLICPEKFAC 1017
The following BLAST results are available for this feature:
BLAST of jgi.p|Trimin1|177248 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
A0A835ZBB5_9STRA1.520e-77100.00Uncharacterized protein n=1 Tax=Tribonema minus Ta... [more]
D8LR26_ECTSI1.060e-1947.80Uncharacterized protein n=1 Tax=Ectocarpus silicul... [more]
A0A6H5KV20_9PHAE2.600e-1533.15Ephrin_rec_like domain-containing protein n=1 Tax=... [more]
F2TZI1_SALR56.790e-1330.00Ephrin_rec_like domain-containing protein n=1 Tax=... [more]
A0A8J6AXK8_9EUKA2.660e-1143.75Chitin-binding type-2 domain (Fragment) n=1 Tax=Ca... [more]
A0A6P8I2Z0_ACTTE1.940e-957.78uncharacterized protein LOC116295506 n=1 Tax=Actin... [more]
A0A1V9ZAJ1_9STRA3.350e-938.30Ephrin_rec_like domain-containing protein n=1 Tax=... [more]
A0A8B7D7P7_HYDVU8.870e-930.13uncharacterized protein LOC100200478 n=1 Tax=Hydra... [more]
UPI001F5EFF5F8.920e-930.13uncharacterized protein LOC100200478 isoform X1 n=... [more]
A0A077ZPK8_STYLE1.480e-860.00Cast multi-domain protein n=1 Tax=Stylonychia lemn... [more]

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
Contig_148contigContig_148:367847..369321 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Tribonema minus UTEX_B_31562021-06-17
Properties
Property NameValue
ProteomeIdTrimin1|177248|e_gw1.148.37.1
BRITEko00000,ko00001,ko03036,ko04812
KEGG Pathwayko04260,ko04261,ko05416,map04260,map04261,map05416
KEGG koko:K16726,ko:K17751
Descriptionactin binding
COG categoryO
Max annot lvl2759|Eukaryota
EggNOG OGsCOG5022@1|root,KOG1217@1|root,KOG3529@1|root,KOG0161@2759|Eukaryota,KOG1217@2759|Eukaryota,KOG3529@2759|Eukaryota
Evalue1.74e-20
Seed ortholog2880.D8LR26
Hectar predicted targeting categoryother localisation
TranscriptId177570
TrackFilteredModels1
ProteinId177248
Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesTypePosition
jgi.p|Trimin1|177248gene_14574Tribonema minus UTEX_B_3156 geneContig_148 367847..369321 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
jgi.p|Trimin1|177248Trimin1|177248|e_gw1.148.37.1Tribonema minus UTEX_B_3156 polypeptideContig_148 367847..369321 -


The following exon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
exon_14574_2exon_14574_2Tribonema minus UTEX_B_3156 exonContig_148 367847..368046 -
exon_14574_1exon_14574_1Tribonema minus UTEX_B_3156 exonContig_148 368961..369321 -


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
CDS_14574CDS_14574Tribonema minus UTEX_B_3156 CDSContig_148 368961..369321 -


Sequences
The following sequences are available for this feature:

spliced messenger RNA

>mRNA_14574 ID=mRNA_14574|Name=jgi.p|Trimin1|177248|organism=Tribonema minus UTEX_B_3156 |type=mRNA|length=561bp|location=Sequence derived from alignment at Contig_148:367847..369321- (Tribonema minus UTEX_B_3156 )|Notes=Excludes all bases but those of type(s): exon.  
ATGACCCCCCCCCCCCCCTCACACAACCCCCCCCCCCCCCCCCCCTGCAG
CTGCGCGGCGGGCCACTACTGCCCCGCCGGCACCGCGTCCCCCTCCCAGT
ACCCCTGCCCCGCGGGCACGTACTCGGACGCCACCGACATCGTGAGCGCC
GCGCAGTGCGCGCAGTGCCCCGCGCGCTTCACGTGCGCGGCGGGGGCGAC
CACAGCAACGCTCGTCACCTGCCCCGCAGGGTACTACTGCCCTGCGGGGT
CCGCCGTCGCCGCGCCGTGCGCCCCGGGGACGTGGTCTGCGCGCACCGCG
CTCGCGGCGGCGGCCGAGTGCGACGCGTGCACGCAGGGCTCGTACTGCAC
CGGCGGCGCAGCGGCGCCCGCGGCGTGCGCAAAGGGCTACTATTGCCCCC
TGGGGTCGTCATCGGCAACAGGCCACGCATGCCCTGCCGGCACGTACAGC
GCCTCTGCCAGCATCTATCTAGTGGGGCAGTGCACGACGTGCCCGACGGG
GAGCTACTGTCCGCAGGTGAGGCTGTCCGACTGTCACAGTCGCCACTTCC
GGCTGTACTGA
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protein sequence of jgi.p|Trimin1|177248

>Trimin1|177248|e_gw1.148.37.1 ID=Trimin1|177248|e_gw1.148.37.1|Name=jgi.p|Trimin1|177248|organism=Tribonema minus UTEX_B_3156 |type=polypeptide|length=187bp
MTPPPPSHNPPPPPPCSCAAGHYCPAGTASPSQYPCPAGTYSDATDIVSA
AQCAQCPARFTCAAGATTATLVTCPAGYYCPAGSAVAAPCAPGTWSARTA
LAAAAECDACTQGSYCTGGAAAPAACAKGYYCPLGSSSATGHACPAGTYS
ASASIYLVGQCTTCPTGSYCPQVRLSDCHSRHFRLY*
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mRNA from alignment at Contig_148:367847..369321-

Legend: polypeptideexonCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_14574 ID=mRNA_14574|Name=jgi.p|Trimin1|177248|organism=Tribonema minus UTEX_B_3156 |type=mRNA|length=1475bp|location=Sequence derived from alignment at Contig_148:367847..369321- (Tribonema minus UTEX_B_3156 )
ATGACCCCCCCCCCCCCCTCACACAACCCCCCCCCCCCCCCCCCCTGCAG
CTGCGCGGCGGGCCACTACTGCCCCGCCGGCACCGCGTCCCCCTCCCAGT
ACCCCTGCCCCGCGGGCACGTACTCGGACGCCACCGACATCGTGAGCGCC
GCGCAGTGCGCGCAGTGCCCCGCGCGCTTCACGTGCGCGGCGGGGGCGAC
CACAGCAACGCTCGTCACCTGCCCCGCAGGGTACTACTGCCCTGCGGGGT
CCGCCGTCGCCGCGCCGTGCGCCCCGGGGACGTGGTCTGCGCGCACCGCG
CTCGCGGCGGCGGCCGAGTGCGACGCGTGCACGCAGGGCTCGTACTGCAC
CGGCGGCGCAGGTGCGGAGACTGTGGCGTCGCTGTGTGTATGGCTGTCTG
AATGTCGTGAGTTTGTGGGGGTGCGGCGGCGCCACGGCGCTCGCGGCGGC
GGGCGAGTGCGACGCGTGCACGCAGGGCGCGTACTGCACCGGCGGCGCAG
GTGCGCGGAGGCCGTCGTCGCATGGCTGTGTGTGTGTATGTGGCTGTTGG
GGTGTTCTGAGGTTGTGCGGGCGCGGCGGGGCGGCAGCGGCAGCGGCGGC
GGCGGCGGCGGCGGCAGCAGGGGAGCAAGCGGCGGGTGGCCGGGGGATGA
CACGGGGGGTGCCGTCGTGGTGGCATGCGTGAGACATAGATGCGAGGCGG
GCGAGGGCAGTGGTCGGTGGCGCATGCGTCGAGCATTCTCACACCGCGGC
TTTCTAACGTCCGGATAATACGGCGACAGCTCCGCAGCGCATGTTGCAGA
CACTCCAACAGCAATACGGGGGGGGTACACAGTGTAGCTGAGTCGCCGCA
TCGCGCGCATGTGCTTCTGGGCAAGTCAACCGGTGTGTGGCAGTCTGAGC
GACCACAGCATGTACAGATCACATGACCCAAATACTCGTGCTACAAGCCT
TTCACTTTTGATGTATATTGCAGTGTAGCCCTTGCGCCTTTCATGTGCAT
GCTCGCAAACGCGCACGCTCTTTGCGGCGTATAGCTGCGAGTGCTGCAAG
AATGCCCCGCCGTCCCTGTTCTCGAATCGCGCAACGCCCATGGCGCAATG
CACAACAACAGCGTGCTGCGGCCCATGCTCACACCGCATGGTGCGCCTCC
ACCCACGGACTCATGTATCCAGTTCTGACTTCCCGATTCTGTGCGCTGTG
CTCGCACTGCTCGTTCCACCTCTGCCCGCTGACTTATTATTGAGTTCTGG
CTTCCCGATGCCGTGCGCTGCGCAGCGGCGCCCGCGGCGTGCGCAAAGGG
CTACTATTGCCCCCTGGGGTCGTCATCGGCAACAGGCCACGCATGCCCTG
CCGGCACGTACAGCGCCTCTGCCAGCATCTATCTAGTGGGGCAGTGCACG
ACGTGCCCGACGGGGAGCTACTGTCCGCAGGTGAGGCTGTCCGACTGTCA
CAGTCGCCACTTCCGGCTGTACTGA
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Coding sequence (CDS) from alignment at Contig_148:367847..369321-

>mRNA_14574 ID=mRNA_14574|Name=jgi.p|Trimin1|177248|organism=Tribonema minus UTEX_B_3156 |type=CDS|length=561bp|location=Sequence derived from alignment at Contig_148:367847..369321- (Tribonema minus UTEX_B_3156 )
ATGACCCCCCCCCCCCCCTCACACAACCCCCCCCCCCCCCCCCCCTGCAG
CTGCGCGGCGGGCCACTACTGCCCCGCCGGCACCGCGTCCCCCTCCCAGT
ACCCCTGCCCCGCGGGCACGTACTCGGACGCCACCGACATCGTGAGCGCC
GCGCAGTGCGCGCAGTGCCCCGCGCGCTTCACGTGCGCGGCGGGGGCGAC
CACAGCAACGCTCGTCACCTGCCCCGCAGGGTACTACTGCCCTGCGGGGT
CCGCCGTCGCCGCGCCGTGCGCCCCGGGGACGTGGTCTGCGCGCACCGCG
CTCGCGGCGGCGGCCGAGTGCGACGCGTGCACGCAGGGCTCGTACTGCAC
CGGCGGCGCAGCGGCGCCCGCGGCGTGCGCAAAGGGCTACTATTGCCCCC
TGGGGTCGTCATCGGCAACAGGCCACGCATGCCCTGCCGGCACGTACAGC
GCCTCTGCCAGCATCTATCTAGTGGGGCAGTGCACGACGTGCCCGACGGG
GAGCTACTGTCCGCAGGTGAGGCTGTCCGACTGTCACAGTCGCCACTTCC
GGCTGTACTGA
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