mRNA_14560 (mRNA) Tribonema minus UTEX_B_3156

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
Namejgi.p|Trimin1|353195
Unique NamemRNA_14560
TypemRNA
OrganismTribonema minus UTEX_B_3156 (Tribonema minus UTEX_B_3156 )
Homology
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BLAST of jgi.p|Trimin1|353195 vs. uniprot
Match: A0A835Z920_9STRA (Uncharacterized protein n=4 Tax=Tribonema minus TaxID=303371 RepID=A0A835Z920_9STRA)

HSP 1 Score: 236 bits (603), Expect = 8.840e-76
Identity = 130/130 (100.00%), Postives = 130/130 (100.00%), Query Frame = 1 
Query:   58 MMGARILICLAMALTTAYSCTTEVWQAGGVKKCVDPCNYSNVVWDRHGNAMCLQYQLTTGGQQICPWSNIAYDADGTPVCMISQNNXXXXXXXXXXXXXXXXXXXVSTSEGFSCPAERIKYNGSLDPYCS 447
            MMGARILICLAMALTTAYSCTTEVWQAGGVKKCVDPCNYSNVVWDRHGNAMCLQYQLTTGGQQICPWSNIAYDADGTPVCMISQNNXXXXXXXXXXXXXXXXXXXVSTSEGFSCPAERIKYNGSLDPYCS
Sbjct:    1 MMGARILICLAMALTTAYSCTTEVWQAGGVKKCVDPCNYSNVVWDRHGNAMCLQYQLTTGGQQICPWSNIAYDADGTPVCMISQNNXXXXXXXXXXXXXXXXXXXVSTSEGFSCPAERIKYNGSLDPYCS 130
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BLAST of jgi.p|Trimin1|353195 vs. uniprot
Match: A0A835YPY2_9STRA (Uncharacterized protein n=2 Tax=Tribonema minus TaxID=303371 RepID=A0A835YPY2_9STRA)

HSP 1 Score: 189 bits (481), Expect = 2.560e-57
Identity = 104/130 (80.00%), Postives = 113/130 (86.92%), Query Frame = 1 
Query:   58 MMGARILICLAMALTTAYSCTTEVWQAGGVKKCVDPCNYSNVVWDRHGNAMCLQYQLTTGGQQICPWSNIAYDADGTPVCMISQNNXXXXXXXXXXXXXXXXXXXVSTSEGFSCPAERIKYNGSLDPYCS 447
            MM ARIL+  AMALTTAYSCTTEVWQAGGVKKCVDPC+YSNV+WDRHGNAMCLQYQLTTGGQQICPW         TP+CM+SQNN  XXXXXXXXXXXXXXXXXVST +GFSCPAERI+YN + DPYC+
Sbjct:    1 MMEARILLGFAMALTTAYSCTTEVWQAGGVKKCVDPCDYSNVIWDRHGNAMCLQYQLTTGGQQICPWXXXXXXXXXTPLCMVSQNNKEXXXXXXXXXXXXXXXXXVSTGDGFSCPAERIRYNDAHDPYCA 130
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BLAST of jgi.p|Trimin1|353195 vs. uniprot
Match: A0A836CBG3_9STRA (Uncharacterized protein n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A836CBG3_9STRA)

HSP 1 Score: 191 bits (484), Expect = 7.290e-57
Identity = 104/130 (80.00%), Postives = 113/130 (86.92%), Query Frame = 1 
Query:   58 MMGARILICLAMALTTAYSCTTEVWQAGGVKKCVDPCNYSNVVWDRHGNAMCLQYQLTTGGQQICPWSNIAYDADGTPVCMISQNNXXXXXXXXXXXXXXXXXXXVSTSEGFSCPAERIKYNGSLDPYCS 447
            MMGARIL+  AMAL TAYSCTTEVWQAGGVKKCVDPC+YSNV+WDRHGNAMCLQYQLTTGGQQICPW         TP+CM+SQNN  XXXXXXXXXXXXXXXXXVST +GFSCPAERI+YN + DPYC+
Sbjct:    1 MMGARILLGFAMALATAYSCTTEVWQAGGVKKCVDPCDYSNVIWDRHGNAMCLQYQLTTGGQQICPWXXXXXXXXXTPLCMVSQNNKEXXXXXXXXXXXXXXXXXVSTGDGFSCPAERIRYNDAHDPYCA 130
[Close]
BLAST of jgi.p|Trimin1|353195 vs. uniprot
Match: A0A835YJX7_9STRA (Uncharacterized protein n=2 Tax=Tribonema minus TaxID=303371 RepID=A0A835YJX7_9STRA)

HSP 1 Score: 181 bits (458), Expect = 4.100e-53
Identity = 103/118 (87.29%), Postives = 110/118 (93.22%), Query Frame = 1 
Query:   61 MGARILICLAMALTTAYSCTTEVWQAGGVKKCVDPCNYSNVVWDRHGNAMCLQYQLTTGGQQICPWSNIAYDADGTPVCMISQNNXXXXXXXXXXXXXXXXXXXVSTSEGFSCPAERI 414
            MGARIL+  AMALTTAYSCTTEV QAGGVKKCV PC+YSNV+WDRHG A+CLQYQLTTGGQQICPWSNIAY ADGTP+CM+SQNN XXXXXXXXXXXXXXXXXXVST +GFSCPAERI
Sbjct:    1 MGARILLGFAMALTTAYSCTTEVSQAGGVKKCVAPCDYSNVIWDRHGTALCLQYQLTTGGQQICPWSNIAYGADGTPLCMVSQNNQXXXXXXXXXXXXXXXXXXVSTGDGFSCPAERI 118
The following BLAST results are available for this feature:
BLAST of jgi.p|Trimin1|353195 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 4
Match NameE-valueIdentityDescription
A0A835Z920_9STRA8.840e-76100.00Uncharacterized protein n=4 Tax=Tribonema minus Ta... [more]
A0A835YPY2_9STRA2.560e-5780.00Uncharacterized protein n=2 Tax=Tribonema minus Ta... [more]
A0A836CBG3_9STRA7.290e-5780.00Uncharacterized protein n=1 Tax=Tribonema minus Ta... [more]
A0A835YJX7_9STRA4.100e-5387.29Uncharacterized protein n=2 Tax=Tribonema minus Ta... [more]
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
Contig_148contigContig_148:295661..297558 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Tribonema minus UTEX_B_31562021-06-17
Properties
Property NameValue
ProteomeIdTrimin1|353195|estExt_Genemark1.C_Ctg_1480042
Hectar predicted targeting categorysignal peptide
TranscriptId353517
TrackFilteredModels1
ProteinId353195
Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesTypePosition
jgi.p|Trimin1|353195gene_14560Tribonema minus UTEX_B_3156 geneContig_148 295661..297558 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
jgi.p|Trimin1|353195Trimin1|353195|estExt_Genemark1.C_Ctg_1480042Tribonema minus UTEX_B_3156 polypeptideContig_148 295718..297101 +


The following exon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
exon_14560_1exon_14560_1Tribonema minus UTEX_B_3156 exonContig_148 295661..295859 +
exon_14560_2exon_14560_2Tribonema minus UTEX_B_3156 exonContig_148 296088..296139 +
exon_14560_3exon_14560_3Tribonema minus UTEX_B_3156 exonContig_148 296903..297558 +


The following five_prime_UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
UTR5_14560UTR5_14560Tribonema minus UTEX_B_3156 five_prime_UTRContig_148 295661..295717 +


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
CDS_14560CDS_14560Tribonema minus UTEX_B_3156 CDSContig_148 295718..295859 +


The following three_prime_UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
UTR3_14560UTR3_14560Tribonema minus UTEX_B_3156 three_prime_UTRContig_148 297102..297558 +


Sequences
The following sequences are available for this feature:

spliced messenger RNA

>mRNA_14560 ID=mRNA_14560|Name=jgi.p|Trimin1|353195|organism=Tribonema minus UTEX_B_3156 |type=mRNA|length=907bp|location=Sequence derived from alignment at Contig_148:295661..297558+ (Tribonema minus UTEX_B_3156 )|Notes=Excludes all bases but those of type(s): exon.  
TCACTCTTACCGCCTCGAAGCCAAACCGCCTTCAAAACTCGAAAACTTAG
CACCACCATGATGGGAGCGCGCATCCTGATCTGTCTCGCTATGGCCCTCA
CCACCGCGTACAGCTGCACGACCGAGGTGTGGCAGGCTGGTGGCGTGAAG
AAATGCGTCGACCCCTGCAACTACAGCAATGTCGTCTGGGACAGGCACGG
CAACGCGATGTGCCTGCAGTACCAGCTGACGACAGGCGGTCAACAGATCT
GCCCGTGGTCCAACATCGCGTACGACGCCGACGGCACACCGGTGTGCATG
ATCTCACAGAACAACCAAGAGCTGTGCAAGACGTCCAGCATCGCCTACGA
CCACGCGCACCAGCCTGTGTGCGTGTCCACAAGCGAGGGCTTCAGCTGCC
CCGCCGAGAGGATCAAGTACAACGGCTCGCTCGACCCCTACTGCTCGTGA
GCGTGCGCGGCAGCAGCAACGCTCTCGAGGGTGCCGCAAGACTTGATGGC
TGGCTTGCCCTATGGCTGCCGAAGTAAAGGCACATAGCAGTTACAATGAC
AGAAGTATGTAGCCTGTTGAAAGGAGGTCAAGCTACAAAGGCAGATGTAG
CCTCAGAGATGTGTGTCTTGCTTTAGAGTGCTGTCACACGGTGCCACCGT
GTGACACCAGCAGCCAATGGCTATGGCTTTCCGGTCGGGTTGGGCTGGCG
GAGCTTACACTGTACAGTACCAAAAAGAGAGTGGAGCGGGGCTGCTATCT
GTTCATGTGAACGGAAACACTGTGTGTGCCAGCGTGTGTGACTTGCGAGG
TACAAAGTTGTGACGTGTTTCAAGCAGTGCCATGGGTTTGTCATCCATGA
AGCAGCTGCAGACTATGTGTTGGACGCGTTGTAAGCACTGGCAAAGGACA
AATATTC
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protein sequence of jgi.p|Trimin1|353195

>Trimin1|353195|estExt_Genemark1.C_Ctg_1480042 ID=Trimin1|353195|estExt_Genemark1.C_Ctg_1480042|Name=jgi.p|Trimin1|353195|organism=Tribonema minus UTEX_B_3156 |type=polypeptide|length=131bp
MMGARILICLAMALTTAYSCTTEVWQAGGVKKCVDPCNYSNVVWDRHGNA
MCLQYQLTTGGQQICPWSNIAYDADGTPVCMISQNNQELCKTSSIAYDHA
HQPVCVSTSEGFSCPAERIKYNGSLDPYCS*
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mRNA from alignment at Contig_148:295661..297558+

Legend: exonfive_prime_UTRpolypeptideCDSthree_prime_UTR
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_14560 ID=mRNA_14560|Name=jgi.p|Trimin1|353195|organism=Tribonema minus UTEX_B_3156 |type=mRNA|length=1898bp|location=Sequence derived from alignment at Contig_148:295661..297558+ (Tribonema minus UTEX_B_3156 )
TCACTCTTACCGCCTCGAAGCCAAACCGCCTTCAAAACTCGAAAACTTAG
CACCACCATGATGGGAGCGCGCATCCTGATCTGTCTCGCTATGGCCCTCA
CCACCGCGTACAGCTGCACGACCGAGGTGTGGCAGGCTGGTGGCGTGAAG
AAATGCGTCGACCCCTGCAACTACAGCAATGTCGTCTGGGACAGGCACGG
TGAGCGCAGTGCAGTTCGAGACCCTGTAGCGGCCACTGACAGGCCACTAT
ATGAAATGGCGAACCTCCGCTACTCAAAGCTGTGCATGCATCAGTGATGT
CAGAGACAAGGTTTCGCGCTGCTACGTGCCAGTAGTAGCGCTTGCGCTTG
CCTCCGCGGAACCGCTGTTCTAGCGCTTCGGCCTGAGCTCATGCTTTCCA
TCTGCCGCCGTCTGCTGCCCGCCACAGGCAACGCGATGTGCCTGCAGTAC
CAGCTGACGACAGGCGGTCAACAGATCTGGTGAGGGGCATCTCTGCCGAT
GGCACTTGCTACTTGTTAGTAGCATCAAAAACTGCTCGCTGCATGCAAAA
GCACATGGAGATCTATGCATGTACTGCAGTGGTAGAAGCTTTCAAGTGTC
TATTTGCAATCATGGTGTGGAATTTTGTTGACGTTTGTCAAGAGATCACT
GATGGCATCTGCATGAGCTCCAAAGCATCGAGGACATGTCAGCACAGATT
TTAGTCATGCCTGAATACATTTGACCGCCTATGACCATTCATGTAGTACG
TGAATGGTGTTGCATTCCTCCAGTACTTCAAGTTGAGGTCCAGTGTCGAG
CCTGAGGAAGCCTTTGCGGATGTAGTACCAGTGTAGATGTGGTTGTCTTT
GAGACGCATTCACGCAGACCTACTGGTGTACATGGCTTGCACAGCAGGTG
TGCCACATGCGCTTTGTCCACCCTTCATGTACATGTCTTCAAAGCACTGA
TCGTTGCTTGGCTCCCAGGCCGTATACTCCCAGAGGTAATGCTGTAGCCC
TTGCGTGCGCCGTATCACGCATACATGAAGGCCGTGCATCATTTTTTTTC
AGTGTACACGCCTGGGTAAGCAGCAATGCATCCTACTCCCGGCGTCGGTG
TTCGCGGCGGGCATTGCGCCTCCTCGTGAACATTTATGACGGCATGTCTA
CATTGGCCTGGCAGTGCCTATATGCAGTGCCAGGCCTGATCACAGCTGCC
CACACATCTAATCTGCTGCGACGACGCTTCGCTCACCTGCAGCCCGTGGT
CCAACATCGCGTACGACGCCGACGGCACACCGGTGTGCATGATCTCACAG
AACAACCAAGAGCTGTGCAAGACGTCCAGCATCGCCTACGACCACGCGCA
CCAGCCTGTGTGCGTGTCCACAAGCGAGGGCTTCAGCTGCCCCGCCGAGA
GGATCAAGTACAACGGCTCGCTCGACCCCTACTGCTCGTGAGCGTGCGCG
GCAGCAGCAACGCTCTCGAGGGTGCCGCAAGACTTGATGGCTGGCTTGCC
CTATGGCTGCCGAAGTAAAGGCACATAGCAGTTACAATGACAGAAGTATG
TAGCCTGTTGAAAGGAGGTCAAGCTACAAAGGCAGATGTAGCCTCAGAGA
TGTGTGTCTTGCTTTAGAGTGCTGTCACACGGTGCCACCGTGTGACACCA
GCAGCCAATGGCTATGGCTTTCCGGTCGGGTTGGGCTGGCGGAGCTTACA
CTGTACAGTACCAAAAAGAGAGTGGAGCGGGGCTGCTATCTGTTCATGTG
AACGGAAACACTGTGTGTGCCAGCGTGTGTGACTTGCGAGGTACAAAGTT
GTGACGTGTTTCAAGCAGTGCCATGGGTTTGTCATCCATGAAGCAGCTGC
AGACTATGTGTTGGACGCGTTGTAAGCACTGGCAAAGGACAAATATTC
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Coding sequence (CDS) from alignment at Contig_148:295661..297558+

>mRNA_14560 ID=mRNA_14560|Name=jgi.p|Trimin1|353195|organism=Tribonema minus UTEX_B_3156 |type=CDS|length=393bp|location=Sequence derived from alignment at Contig_148:295661..297558+ (Tribonema minus UTEX_B_3156 )
ATGATGGGAGCGCGCATCCTGATCTGTCTCGCTATGGCCCTCACCACCGC
GTACAGCTGCACGACCGAGGTGTGGCAGGCTGGTGGCGTGAAGAAATGCG
TCGACCCCTGCAACTACAGCAATGTCGTCTGGGACAGGCACGGCAACGCG
ATGTGCCTGCAGTACCAGCTGACGACAGGCGGTCAACAGATCTGCCCGTG
GTCCAACATCGCGTACGACGCCGACGGCACACCGGTGTGCATGATCTCAC
AGAACAACCAAGAGCTGTGCAAGACGTCCAGCATCGCCTACGACCACGCG
CACCAGCCTGTGTGCGTGTCCACAAGCGAGGGCTTCAGCTGCCCCGCCGA
GAGGATCAAGTACAACGGCTCGCTCGACCCCTACTGCTCGTGA
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