mRNA_14506 (mRNA) Tribonema minus UTEX_B_3156

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
Namejgi.p|Trimin1|175327
Unique NamemRNA_14506
TypemRNA
OrganismTribonema minus UTEX_B_3156 (Tribonema minus UTEX_B_3156 )
Homology
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BLAST of jgi.p|Trimin1|175327 vs. uniprot
Match: A0A835ZKS5_9STRA (Uncharacterized protein n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A835ZKS5_9STRA)

HSP 1 Score: 165 bits (417), Expect = 1.110e-51
Identity = 83/83 (100.00%), Postives = 83/83 (100.00%), Query Frame = 1 
Query:    1 RSNVPPGTPVLVVQKQHQRSGELTRGTVARNLTNSGVHPRGQKVMLVVFMDVNPMTVVLLMEGTLMFTSTMPGELRSMVSRCH 249
            RSNVPPGTPVLVVQKQHQRSGELTRGTVARNLTNSGVHPRGQKVMLVVFMDVNPMTVVLLMEGTLMFTSTMPGELRSMVSRCH
Sbjct:    1 RSNVPPGTPVLVVQKQHQRSGELTRGTVARNLTNSGVHPRGQKVMLVVFMDVNPMTVVLLMEGTLMFTSTMPGELRSMVSRCH 83
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BLAST of jgi.p|Trimin1|175327 vs. uniprot
Match: A0A6H5K733_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5K733_9PHAE)

HSP 1 Score: 77.8 bits (190), Expect = 4.350e-15
Identity = 38/46 (82.61%), Postives = 41/46 (89.13%), Query Frame = 1 
Query:    1 RSNVPPGTPVLVVQKQHQRSGELTRGTVARNLTNSGVHPRGQKVML 138
            RSNVPPGTPV VVQKQHQR+G+LT GTV+R LTNSG HPRG KVML
Sbjct:  129 RSNVPPGTPVEVVQKQHQRTGKLTPGTVSRLLTNSGFHPRGIKVML 174
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BLAST of jgi.p|Trimin1|175327 vs. uniprot
Match: D8LJ50_ECTSI (Uncharacterized protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D8LJ50_ECTSI)

HSP 1 Score: 72.8 bits (177), Expect = 4.690e-15
Identity = 36/44 (81.82%), Postives = 38/44 (86.36%), Query Frame = 1 
Query:    1 RSNVPPGTPVLVVQKQHQRSGELTRGTVARNLTNSGVHPRGQKV 132
            RSNVPPGT V VVQKQHQR+GELT GTV+R LTNSG HPRG KV
Sbjct:   40 RSNVPPGTSVEVVQKQHQRTGELTPGTVSRLLTNSGFHPRGIKV 83
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BLAST of jgi.p|Trimin1|175327 vs. uniprot
Match: A0A1I1AFU2_9CLOT (Uncharacterized protein n=1 Tax=Clostridium frigidicarnis TaxID=84698 RepID=A0A1I1AFU2_9CLOT)

HSP 1 Score: 65.9 bits (159), Expect = 1.420e-12
Identity = 32/46 (69.57%), Postives = 36/46 (78.26%), Query Frame = 1 
Query:    1 RSNVPPGTPVLVVQKQHQRSGELTRGTVARNLTNSGVHPRGQKVML 138
            R N+ PGT V+VVQKQ QRSG+LT G V R LTNS +HPRG KVML
Sbjct:    6 RENIKPGTKVMVVQKQDQRSGKLTEGVVKRILTNSHIHPRGIKVML 51
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BLAST of jgi.p|Trimin1|175327 vs. uniprot
Match: A0A0C2E8X9_9STAP (Uncharacterized protein n=6 Tax=Salinicoccus TaxID=45669 RepID=A0A0C2E8X9_9STAP)

HSP 1 Score: 64.7 bits (156), Expect = 4.060e-12
Identity = 32/46 (69.57%), Postives = 33/46 (71.74%), Query Frame = 1 
Query:    1 RSNVPPGTPVLVVQKQHQRSGELTRGTVARNLTNSGVHPRGQKVML 138
            R N+ PG  V VVQK HQRSGELT GTVAR LTNS  HP G KV L
Sbjct:    6 RENIKPGVKVKVVQKHHQRSGELTEGTVARLLTNSATHPHGIKVKL 51
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BLAST of jgi.p|Trimin1|175327 vs. uniprot
Match: A0A558AQX7_9STAP (YwbE family protein n=3 Tax=Salinicoccus TaxID=45669 RepID=A0A558AQX7_9STAP)

HSP 1 Score: 61.6 bits (148), Expect = 6.670e-11
Identity = 30/46 (65.22%), Postives = 34/46 (73.91%), Query Frame = 1 
Query:    1 RSNVPPGTPVLVVQKQHQRSGELTRGTVARNLTNSGVHPRGQKVML 138
            R+++ PGT V VVQK HQRSGELT G VA+ LTNS  HP G KV L
Sbjct:    6 RNDIRPGTKVKVVQKHHQRSGELTEGVVAKLLTNSATHPHGIKVKL 51
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BLAST of jgi.p|Trimin1|175327 vs. uniprot
Match: A0A1F5ZCX1_9BACT (Uncharacterized protein n=1 Tax=Candidatus Gottesmanbacteria bacterium RBG_16_43_7 TaxID=1798373 RepID=A0A1F5ZCX1_9BACT)

HSP 1 Score: 60.8 bits (146), Expect = 1.590e-10
Identity = 31/46 (67.39%), Postives = 33/46 (71.74%), Query Frame = 1 
Query:    1 RSNVPPGTPVLVVQKQHQRSGELTRGTVARNLTNSGVHPRGQKVML 138
            RSN+ PG PV VVQKQ QR+G LT G VA  LTNS  HPRG KV L
Sbjct:    7 RSNIKPGLPVSVVQKQDQRTGRLTDGVVAEILTNSDFHPRGIKVRL 52
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BLAST of jgi.p|Trimin1|175327 vs. uniprot
Match: A0A1V4IDG8_9CLOT (YwbE family protein n=1 Tax=Clostridium chromiireducens TaxID=225345 RepID=A0A1V4IDG8_9CLOT)

HSP 1 Score: 60.5 bits (145), Expect = 1.900e-10
Identity = 30/46 (65.22%), Postives = 37/46 (80.43%), Query Frame = 1 
Query:    1 RSNVPPGTPVLVVQKQHQRSGELTRGTVARNLTNSGVHPRGQKVML 138
            RSN+  G+ VLVV+K+HQR+GELT+G V R LTNS +H RG KVML
Sbjct:    6 RSNIKIGSKVLVVKKEHQRTGELTQGIVKRILTNSQIHNRGIKVML 51
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BLAST of jgi.p|Trimin1|175327 vs. uniprot
Match: UPI001AA5DF08 (YwbE family protein n=1 Tax=Clostridium polyendosporum TaxID=69208 RepID=UPI001AA5DF08)

HSP 1 Score: 59.7 bits (143), Expect = 3.830e-10
Identity = 29/47 (61.70%), Postives = 33/47 (70.21%), Query Frame = 1 
Query:    1 RSNVPPGTPVLVVQKQHQRSGELTRGTVARNLTNSGVHPRGQKVMLV 141
            R N+ PGT VL+VQKQ QR+G+LT G V   LTNS  HP G KV LV
Sbjct:    6 RENIKPGTKVLIVQKQDQRTGKLTEGIVGNILTNSSTHPHGIKVRLV 52
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BLAST of jgi.p|Trimin1|175327 vs. uniprot
Match: UPI001F0694AC (YwbE family protein n=2 Tax=unclassified Lutibacter TaxID=2626258 RepID=UPI001F0694AC)

HSP 1 Score: 59.7 bits (143), Expect = 3.830e-10
Identity = 30/46 (65.22%), Postives = 33/46 (71.74%), Query Frame = 1 
Query:    1 RSNVPPGTPVLVVQKQHQRSGELTRGTVARNLTNSGVHPRGQKVML 138
            RSN+  G+ V +VQK HQRSGELT GTV R LTNS  HP G KV L
Sbjct:    6 RSNIKIGSDVEIVQKHHQRSGELTEGTVKRILTNSSKHPHGIKVQL 51
The following BLAST results are available for this feature:
BLAST of jgi.p|Trimin1|175327 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
A0A835ZKS5_9STRA1.110e-51100.00Uncharacterized protein n=1 Tax=Tribonema minus Ta... [more]
A0A6H5K733_9PHAE4.350e-1582.61Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
D8LJ50_ECTSI4.690e-1581.82Uncharacterized protein n=1 Tax=Ectocarpus silicul... [more]
A0A1I1AFU2_9CLOT1.420e-1269.57Uncharacterized protein n=1 Tax=Clostridium frigid... [more]
A0A0C2E8X9_9STAP4.060e-1269.57Uncharacterized protein n=6 Tax=Salinicoccus TaxID... [more]
A0A558AQX7_9STAP6.670e-1165.22YwbE family protein n=3 Tax=Salinicoccus TaxID=456... [more]
A0A1F5ZCX1_9BACT1.590e-1067.39Uncharacterized protein n=1 Tax=Candidatus Gottesm... [more]
A0A1V4IDG8_9CLOT1.900e-1065.22YwbE family protein n=1 Tax=Clostridium chromiired... [more]
UPI001AA5DF083.830e-1061.70YwbE family protein n=1 Tax=Clostridium polyendosp... [more]
UPI001F0694AC3.830e-1065.22YwbE family protein n=2 Tax=unclassified Lutibacte... [more]

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
Contig_123contigContig_123:358665..358916 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Tribonema minus UTEX_B_31562021-06-17
Properties
Property NameValue
ProteomeIdTrimin1|175327|e_gw1.123.104.1
DescriptionUncharacterized conserved protein (DUF2196)
COG categoryS
Max annot lvl186801|Clostridia
EggNOG OGsCOG4895@1|root,COG4895@2|Bacteria,1VEG3@1239|Firmicutes,24QNU@186801|Clostridia,36MN1@31979|Clostridiaceae
Evalue7.52e-12
Seed ortholog536227.CcarbDRAFT_0387
Hectar predicted targeting categoryother localisation
TranscriptId175649
TrackFilteredModels1
ProteinId175327
Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesTypePosition
jgi.p|Trimin1|175327gene_14506Tribonema minus UTEX_B_3156 geneContig_123 358665..358916 +


The following exon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
exon_14506_1exon_14506_1Tribonema minus UTEX_B_3156 exonContig_123 358665..358916 +


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
CDS_14506CDS_14506Tribonema minus UTEX_B_3156 CDSContig_123 358665..358916 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
jgi.p|Trimin1|175327Trimin1|175327|e_gw1.123.104.1Tribonema minus UTEX_B_3156 polypeptideContig_123 358665..358916 +


Sequences
The following sequences are available for this feature:

spliced messenger RNA

>mRNA_14506 ID=mRNA_14506|Name=jgi.p|Trimin1|175327|organism=Tribonema minus UTEX_B_3156 |type=mRNA|length=252bp|location=Sequence derived from alignment at Contig_123:358665..358916+ (Tribonema minus UTEX_B_3156 )|Notes=Excludes all bases but those of type(s): exon.  
CGCTCAAATGTGCCCCCTGGAACCCCCGTGCTTGTGGTTCAGAAGCAGCA
CCAGAGATCAGGGGAGCTGACACGTGGTACGGTGGCGCGCAATCTTACCA
ACAGCGGCGTGCACCCGCGGGGACAGAAGGTGATGCTTGTTGTCTTCATG
GATGTGAATCCAATGACAGTTGTGCTTTTGATGGAGGGCACTCTCATGTT
TACAAGCACAATGCCTGGTGAATTAAGGTCAATGGTGAGTAGATGTCACT
AA
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protein sequence of jgi.p|Trimin1|175327

>Trimin1|175327|e_gw1.123.104.1 ID=Trimin1|175327|e_gw1.123.104.1|Name=jgi.p|Trimin1|175327|organism=Tribonema minus UTEX_B_3156 |type=polypeptide|length=84bp
RSNVPPGTPVLVVQKQHQRSGELTRGTVARNLTNSGVHPRGQKVMLVVFM
DVNPMTVVLLMEGTLMFTSTMPGELRSMVSRCH*
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mRNA from alignment at Contig_123:358665..358916+

Legend: exonpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_14506 ID=mRNA_14506|Name=jgi.p|Trimin1|175327|organism=Tribonema minus UTEX_B_3156 |type=mRNA|length=252bp|location=Sequence derived from alignment at Contig_123:358665..358916+ (Tribonema minus UTEX_B_3156 )
CGCTCAAATGTGCCCCCTGGAACCCCCGTGCTTGTGGTTCAGAAGCAGCA
CCAGAGATCAGGGGAGCTGACACGTGGTACGGTGGCGCGCAATCTTACCA
ACAGCGGCGTGCACCCGCGGGGACAGAAGGTGATGCTTGTTGTCTTCATG
GATGTGAATCCAATGACAGTTGTGCTTTTGATGGAGGGCACTCTCATGTT
TACAAGCACAATGCCTGGTGAATTAAGGTCAATGGTGAGTAGATGTCACT
AA
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Coding sequence (CDS) from alignment at Contig_123:358665..358916+

>mRNA_14506 ID=mRNA_14506|Name=jgi.p|Trimin1|175327|organism=Tribonema minus UTEX_B_3156 |type=CDS|length=252bp|location=Sequence derived from alignment at Contig_123:358665..358916+ (Tribonema minus UTEX_B_3156 )
CGCTCAAATGTGCCCCCTGGAACCCCCGTGCTTGTGGTTCAGAAGCAGCA
CCAGAGATCAGGGGAGCTGACACGTGGTACGGTGGCGCGCAATCTTACCA
ACAGCGGCGTGCACCCGCGGGGACAGAAGGTGATGCTTGTTGTCTTCATG
GATGTGAATCCAATGACAGTTGTGCTTTTGATGGAGGGCACTCTCATGTT
TACAAGCACAATGCCTGGTGAATTAAGGTCAATGGTGAGTAGATGTCACT
AA
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