mRNA_14462 (mRNA) Tribonema minus UTEX_B_3156
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Overview
Homology
BLAST of jgi.p|Trimin1|154384 vs. uniprot
Match: A0A835ZAG4_9STRA (GPS domain-containing protein (Fragment) n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A835ZAG4_9STRA) HSP 1 Score: 339 bits (869), Expect = 8.890e-118 Identity = 172/172 (100.00%), Postives = 172/172 (100.00%), Query Frame = 1
Query: 1 SPIIFTLPLGSYNLTEVVVLNGTCIAGQTTTFDCPFAEELYECSETGDLSYQCGGQAPDCSYYDVVFQQYSTAGCKVVDTSNTTITCACSHLTDFGSRLTQTSGMALTVLGQKITLQDLLDNLAVVITLLVVYAIFILACIWGRYLDKRDRRAEIRVGVAEDEADGGGAKGA 516
SPIIFTLPLGSYNLTEVVVLNGTCIAGQTTTFDCPFAEELYECSETGDLSYQCGGQAPDCSYYDVVFQQYSTAGCKVVDTSNTTITCACSHLTDFGSRLTQTSGMALTVLGQKITLQDLLDNLAVVITLLVVYAIFILACIWGRYLDKRDRRAEIRVGVAEDEADGGGAKGA
Sbjct: 1 SPIIFTLPLGSYNLTEVVVLNGTCIAGQTTTFDCPFAEELYECSETGDLSYQCGGQAPDCSYYDVVFQQYSTAGCKVVDTSNTTITCACSHLTDFGSRLTQTSGMALTVLGQKITLQDLLDNLAVVITLLVVYAIFILACIWGRYLDKRDRRAEIRVGVAEDEADGGGAKGA 172
BLAST of jgi.p|Trimin1|154384 vs. uniprot
Match: A0A7S2QVS3_9STRA (Hypothetical protein (Fragment) n=1 Tax=Triparma pacifica TaxID=91992 RepID=A0A7S2QVS3_9STRA) HSP 1 Score: 91.3 bits (225), Expect = 3.550e-18 Identity = 59/162 (36.42%), Postives = 84/162 (51.85%), Query Frame = 1
Query: 52 VVLNGTC-IAGQTTTFDCPF------------AEELYECSETG--------------DLSYQCGGQAPDCSYYDVVFQQYSTAGCKVVDTSNTTITCACSHLTDFGSRLTQTSGMALTV--LGQKITLQDLLDNLAVVITLLVVYAIFILACIWGRYLDKRD 450
V NGTC + GQ F C A YE + TG ++ +QCGG P C + D ++ GC + + I C C+HLT+F SRL MA +V L +T++D+L+NL V++TL+V+Y+ FIL CI+GRYLDK+D
Sbjct: 3548 VTFNGTCSMRGQVLEFQCSQGLVTFNCTKEYEAAVAYEMATTGNATRPSKYSDDITFEVEFQCGG--PTCQWMDHSTMSWTKEGCVEAGRNESVIVCECTHLTEFASRLEAIGSMANSVISLAGSLTVEDILNNLVVLVTLVVLYSTFILGCIYGRYLDKKD 3707
BLAST of jgi.p|Trimin1|154384 vs. uniprot
Match: UPI000A2A927E (polycystic kidney disease protein 1-like 2 n=1 Tax=Exaiptasia diaphana TaxID=2652724 RepID=UPI000A2A927E) HSP 1 Score: 62.8 bits (151), Expect = 2.600e-8 Identity = 40/114 (35.09%), Postives = 63/114 (55.26%), Query Frame = 1
Query: 130 SETGDLSYQCGGQAPDCSYYDVVFQQYSTAGCKVV--DTSNTTITCACSHLTDFG-SRLTQTSGMALTVLGQKITLQDLLDNLAVVITLLVVYAIFILACIWGRYLDKRDRRAE 462
+E D +Y + CSY+D ++T GCK S+ ++C CSH+T FG S L + + L + + DN+ V +T+ +V+ I+ILA IWGR DKRDR+++
Sbjct: 436 NERTDRNYSMDSMSVGCSYWDESASTWTTEGCKARRRKQSSRLLSCGCSHMTAFGGSFLVAPNPIDLDKVWVGFLTPE--DNIPVYVTMAIVFLIYILAVIWGRRADKRDRQSQ 547
BLAST of jgi.p|Trimin1|154384 vs. uniprot
Match: A0A210R5K5_MIZYE (Polycystic kidney disease and receptor for egg jelly-related protein n=2 Tax=Mizuhopecten yessoensis TaxID=6573 RepID=A0A210R5K5_MIZYE) HSP 1 Score: 57.4 bits (137), Expect = 1.910e-6 Identity = 41/140 (29.29%), Postives = 66/140 (47.14%), Query Frame = 1
Query: 28 GSYNLTEVVVLNGTCIAGQTTTFDCPFAEELYECSETGDLSYQCGGQAPDCSYYDVVFQQYSTAGCKVVDTSNT-TITCACSHLTDFGSRLTQTSGMALTVLGQKITLQDLLDNLAVVITLLVVYAIFILACIWGRYLDK 444
GS+ + V G IA T D PF T ++S + G C +YD Q++T GC++ N T+TC+C HLT F + + + + L DN +VIT+L+V+ ++++ +W R DK
Sbjct: 1120 GSHKYLIIAVQEGQTIAANET--DVPFI--------TTNVSVRIGIYNTACGFYDNAKDQWATDGCQISRPKNLKTMTCSCYHLTSFAAGFIAVPNLVDPITDATLFL-TFFDNPVIVITVLIVWCLYLIMLVWARRKDK 1248
BLAST of jgi.p|Trimin1|154384 vs. uniprot
Match: A0A7S2FS85_9STRA (Hypothetical protein (Fragment) n=1 Tax=Florenciella parvula TaxID=236787 RepID=A0A7S2FS85_9STRA) HSP 1 Score: 57.0 bits (136), Expect = 2.020e-6 Identity = 45/132 (34.09%), Postives = 66/132 (50.00%), Query Frame = 1
Query: 97 DCPFAEELYECSETGDLSYQCGGQAPDCSYYDVVFQ--------QYSTAGC-KVVDTSNTTITCACSHLTDFGSRLTQTSGMALTVLGQK--ITLQDLLDNLAVVITLLVVYAIFILACIWGRYLDKRDRRA 459
DC + +E C + L + PD +V + +S GC K V TS T I CAC H TDFGS + + A + I+L DLL L V++ + + A+F+ CI+GRYLD++D+ A
Sbjct: 55 DCTYWDETLVCDDQNVLRDPATAEWPDFPDGRMVGECDHPGTMGGWSGKGCVKTVHTS-TKIVCACDHATDFGSVVEGIAAGADATISNAGTISLMDLLKILLVILVVFTIDALFVGLCIYGRYLDEKDKAA 185
BLAST of jgi.p|Trimin1|154384 vs. uniprot
Match: A0A7S2CQ39_9STRA (Hypothetical protein n=2 Tax=Florenciella parvula TaxID=236787 RepID=A0A7S2CQ39_9STRA) HSP 1 Score: 55.8 bits (133), Expect = 6.360e-6 Identity = 27/80 (33.75%), Postives = 40/80 (50.00%), Query Frame = 1
Query: 79 GQTTTFDCPFAEELYEC-----------SETGDLSYQCGGQAPDCSYYDVVFQQYSTAGCKVVDTSNTTITCACSHLTDF 285
G TFDC + + + C S T ++Y C G P C ++D +S GC + ++T++TC CSHLTDF
Sbjct: 1343 GAVLTFDCAYGDRTHTCDSAAAGVTSIGSTTYWITYVCPGIIPSCLWWDGTADSWSGDGCSLASYTSTSVTCECSHLTDF 1422
BLAST of jgi.p|Trimin1|154384 vs. uniprot
Match: A0A6P4YRW0_BRABE (polycystic kidney disease protein 1-like 2 n=1 Tax=Branchiostoma belcheri TaxID=7741 RepID=A0A6P4YRW0_BRABE) HSP 1 Score: 55.8 bits (133), Expect = 6.480e-6 Identity = 34/93 (36.56%), Postives = 57/93 (61.29%), Query Frame = 1
Query: 178 CSYYDVVFQQYSTAGCKVVDTSNTTIT-CACSHLTDFGSRLTQ-TSGMALTVLGQKITLQDLLDNLAVVITLLVVYAIFILACIWGRYLDKRD 450
C ++D QQ+S+ GC+V ++TT+T C C HLT FGS + +L +L ++ +N +VVIT+ V++ +++L IW R+ DK+D
Sbjct: 843 CLFFDDAQQQWSSDGCEVGPLTSTTLTHCLCDHLTTFGSDFQFFVAPNSLNILSALQGFANIGENPSVVITIGVLFGLYLLIVIWARWEDKKD 935
BLAST of jgi.p|Trimin1|154384 vs. uniprot
Match: A0A6P4YRX7_BRABE (polycystic kidney disease protein 1-like 2 n=1 Tax=Branchiostoma belcheri TaxID=7741 RepID=A0A6P4YRX7_BRABE) HSP 1 Score: 55.1 bits (131), Expect = 1.140e-5 Identity = 35/93 (37.63%), Postives = 55/93 (59.14%), Query Frame = 1
Query: 178 CSYYDVVFQQYSTAGCKVVDTSNTTIT-CACSHLTDFGSRLTQ-TSGMALTVLGQKITLQDLLDNLAVVITLLVVYAIFILACIWGRYLDKRD 450
C ++D Q +ST GC+V + TT+T C C HLT FGS + +L +L +++DN +VVIT+ V++ +++L IW R DK+D
Sbjct: 165 CLFFDNDQQLWSTEGCEVGSLTTTTLTHCLCDHLTAFGSDFQFFVAPNSLNILEALEGFTNIMDNPSVVITIGVLFGLYLLIVIWARREDKKD 257
BLAST of jgi.p|Trimin1|154384 vs. uniprot
Match: UPI00193A6F3D (uncharacterized protein LOC120348022 n=1 Tax=Styela clava TaxID=7725 RepID=UPI00193A6F3D) HSP 1 Score: 55.1 bits (131), Expect = 1.220e-5 Identity = 35/93 (37.63%), Postives = 55/93 (59.14%), Query Frame = 1
Query: 178 CSYYDVVFQQYSTAGCKVV-DTSNTTITCACSHLTDFGSRL-TQTSGMALTVLGQKITLQDLLDNLAVVITLLVVYAIFILACIWGRYLDKRD 450
C Y++ +++ T GC V +T+ I C CSHLT FG+ + + V+ Q I DL +NLAV++TL+ ++ +FIL I+ R DK+D
Sbjct: 3923 CRYWNETLEKWETDGCLVSSETTEDKIVCLCSHLTSFGADFFVAPNPIDFAVIAQNIG--DLANNLAVLLTLVAIFVLFILGLIFFRRKDKQD 4013
BLAST of jgi.p|Trimin1|154384 vs. uniprot
Match: A0A6P4YRW5_BRABE (LOW QUALITY PROTEIN: polycystic kidney disease protein 1-like 2 n=1 Tax=Branchiostoma belcheri TaxID=7741 RepID=A0A6P4YRW5_BRABE) HSP 1 Score: 54.3 bits (129), Expect = 2.080e-5 Identity = 33/93 (35.48%), Postives = 57/93 (61.29%), Query Frame = 1
Query: 178 CSYYDVVFQQYSTAGCKVVDTSNTTIT-CACSHLTDFGSRLTQ-TSGMALTVLGQKITLQDLLDNLAVVITLLVVYAIFILACIWGRYLDKRD 450
C ++D Q++S+ GC+V ++TT+T C C HLT FGS + +L +L ++ +N +VVIT+ V++ +++L IW R+ DK+D
Sbjct: 467 CLFFDDAQQEWSSDGCEVGPLTSTTLTHCLCDHLTAFGSDFQFFVAPNSLNILSALQGFANIGENPSVVITIGVLFGLYLLIVIWARWEDKKD 559 The following BLAST results are available for this feature:
BLAST of jgi.p|Trimin1|154384 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90) Total hits: 14
Pagesback to topAlignments
The following features are aligned
Analyses
This mRNA is derived from or has results from the following analyses
Properties
Relationships
This mRNA is a part of the following gene feature(s):
The following exon feature(s) are a part of this mRNA:
The following CDS feature(s) are a part of this mRNA:
The following polypeptide feature(s) derives from this mRNA:
Sequences
The following sequences are available for this feature:
spliced messenger RNA >mRNA_14462 ID=mRNA_14462|Name=jgi.p|Trimin1|154384|organism=Tribonema minus UTEX_B_3156 |type=mRNA|length=516bp|location=Sequence derived from alignment at Contig_132:389406..389921- (Tribonema minus UTEX_B_3156 )|Notes=Excludes all bases but those of type(s): exon. TCACCAATCATTTTCACACTGCCTCTGGGCAGCTACAACCTAACAGAGGTback to top protein sequence of jgi.p|Trimin1|154384 >Trimin1|154384|gw1.132.75.1 ID=Trimin1|154384|gw1.132.75.1|Name=jgi.p|Trimin1|154384|organism=Tribonema minus UTEX_B_3156 |type=polypeptide|length=172bp SPIIFTLPLGSYNLTEVVVLNGTCIAGQTTTFDCPFAEELYECSETGDLSback to top mRNA from alignment at Contig_132:389406..389921- Legend: exonpolypeptideCDS Hold the cursor over a type above to highlight its positions in the sequence below.>mRNA_14462 ID=mRNA_14462|Name=jgi.p|Trimin1|154384|organism=Tribonema minus UTEX_B_3156 |type=mRNA|length=516bp|location=Sequence derived from alignment at Contig_132:389406..389921- (Tribonema minus UTEX_B_3156 )back to top Coding sequence (CDS) from alignment at Contig_132:389406..389921- >mRNA_14462 ID=mRNA_14462|Name=jgi.p|Trimin1|154384|organism=Tribonema minus UTEX_B_3156 |type=CDS|length=516bp|location=Sequence derived from alignment at Contig_132:389406..389921- (Tribonema minus UTEX_B_3156 )back to top |