mRNA_14462 (mRNA) Tribonema minus UTEX_B_3156

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
Namejgi.p|Trimin1|154384
Unique NamemRNA_14462
TypemRNA
OrganismTribonema minus UTEX_B_3156 (Tribonema minus UTEX_B_3156 )
Homology
BLAST of jgi.p|Trimin1|154384 vs. uniprot
Match: A0A835ZAG4_9STRA (GPS domain-containing protein (Fragment) n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A835ZAG4_9STRA)

HSP 1 Score: 339 bits (869), Expect = 8.890e-118
Identity = 172/172 (100.00%), Postives = 172/172 (100.00%), Query Frame = 1
Query:    1 SPIIFTLPLGSYNLTEVVVLNGTCIAGQTTTFDCPFAEELYECSETGDLSYQCGGQAPDCSYYDVVFQQYSTAGCKVVDTSNTTITCACSHLTDFGSRLTQTSGMALTVLGQKITLQDLLDNLAVVITLLVVYAIFILACIWGRYLDKRDRRAEIRVGVAEDEADGGGAKGA 516
            SPIIFTLPLGSYNLTEVVVLNGTCIAGQTTTFDCPFAEELYECSETGDLSYQCGGQAPDCSYYDVVFQQYSTAGCKVVDTSNTTITCACSHLTDFGSRLTQTSGMALTVLGQKITLQDLLDNLAVVITLLVVYAIFILACIWGRYLDKRDRRAEIRVGVAEDEADGGGAKGA
Sbjct:    1 SPIIFTLPLGSYNLTEVVVLNGTCIAGQTTTFDCPFAEELYECSETGDLSYQCGGQAPDCSYYDVVFQQYSTAGCKVVDTSNTTITCACSHLTDFGSRLTQTSGMALTVLGQKITLQDLLDNLAVVITLLVVYAIFILACIWGRYLDKRDRRAEIRVGVAEDEADGGGAKGA 172          
BLAST of jgi.p|Trimin1|154384 vs. uniprot
Match: A0A7S2QVS3_9STRA (Hypothetical protein (Fragment) n=1 Tax=Triparma pacifica TaxID=91992 RepID=A0A7S2QVS3_9STRA)

HSP 1 Score: 91.3 bits (225), Expect = 3.550e-18
Identity = 59/162 (36.42%), Postives = 84/162 (51.85%), Query Frame = 1
Query:   52 VVLNGTC-IAGQTTTFDCPF------------AEELYECSETG--------------DLSYQCGGQAPDCSYYDVVFQQYSTAGCKVVDTSNTTITCACSHLTDFGSRLTQTSGMALTV--LGQKITLQDLLDNLAVVITLLVVYAIFILACIWGRYLDKRD 450
            V  NGTC + GQ   F C              A   YE + TG              ++ +QCGG  P C + D     ++  GC     + + I C C+HLT+F SRL     MA +V  L   +T++D+L+NL V++TL+V+Y+ FIL CI+GRYLDK+D
Sbjct: 3548 VTFNGTCSMRGQVLEFQCSQGLVTFNCTKEYEAAVAYEMATTGNATRPSKYSDDITFEVEFQCGG--PTCQWMDHSTMSWTKEGCVEAGRNESVIVCECTHLTEFASRLEAIGSMANSVISLAGSLTVEDILNNLVVLVTLVVLYSTFILGCIYGRYLDKKD 3707          
BLAST of jgi.p|Trimin1|154384 vs. uniprot
Match: UPI000A2A927E (polycystic kidney disease protein 1-like 2 n=1 Tax=Exaiptasia diaphana TaxID=2652724 RepID=UPI000A2A927E)

HSP 1 Score: 62.8 bits (151), Expect = 2.600e-8
Identity = 40/114 (35.09%), Postives = 63/114 (55.26%), Query Frame = 1
Query:  130 SETGDLSYQCGGQAPDCSYYDVVFQQYSTAGCKVV--DTSNTTITCACSHLTDFG-SRLTQTSGMALTVLGQKITLQDLLDNLAVVITLLVVYAIFILACIWGRYLDKRDRRAE 462
            +E  D +Y     +  CSY+D     ++T GCK      S+  ++C CSH+T FG S L   + + L  +       +  DN+ V +T+ +V+ I+ILA IWGR  DKRDR+++
Sbjct:  436 NERTDRNYSMDSMSVGCSYWDESASTWTTEGCKARRRKQSSRLLSCGCSHMTAFGGSFLVAPNPIDLDKVWVGFLTPE--DNIPVYVTMAIVFLIYILAVIWGRRADKRDRQSQ 547          
BLAST of jgi.p|Trimin1|154384 vs. uniprot
Match: A0A210R5K5_MIZYE (Polycystic kidney disease and receptor for egg jelly-related protein n=2 Tax=Mizuhopecten yessoensis TaxID=6573 RepID=A0A210R5K5_MIZYE)

HSP 1 Score: 57.4 bits (137), Expect = 1.910e-6
Identity = 41/140 (29.29%), Postives = 66/140 (47.14%), Query Frame = 1
Query:   28 GSYNLTEVVVLNGTCIAGQTTTFDCPFAEELYECSETGDLSYQCGGQAPDCSYYDVVFQQYSTAGCKVVDTSNT-TITCACSHLTDFGSRLTQTSGMALTVLGQKITLQDLLDNLAVVITLLVVYAIFILACIWGRYLDK 444
            GS+    + V  G  IA   T  D PF         T ++S + G     C +YD    Q++T GC++    N  T+TC+C HLT F +       +   +    + L    DN  +VIT+L+V+ ++++  +W R  DK
Sbjct: 1120 GSHKYLIIAVQEGQTIAANET--DVPFI--------TTNVSVRIGIYNTACGFYDNAKDQWATDGCQISRPKNLKTMTCSCYHLTSFAAGFIAVPNLVDPITDATLFL-TFFDNPVIVITVLIVWCLYLIMLVWARRKDK 1248          
BLAST of jgi.p|Trimin1|154384 vs. uniprot
Match: A0A7S2FS85_9STRA (Hypothetical protein (Fragment) n=1 Tax=Florenciella parvula TaxID=236787 RepID=A0A7S2FS85_9STRA)

HSP 1 Score: 57.0 bits (136), Expect = 2.020e-6
Identity = 45/132 (34.09%), Postives = 66/132 (50.00%), Query Frame = 1
Query:   97 DCPFAEELYECSETGDLSYQCGGQAPDCSYYDVVFQ--------QYSTAGC-KVVDTSNTTITCACSHLTDFGSRLTQTSGMALTVLGQK--ITLQDLLDNLAVVITLLVVYAIFILACIWGRYLDKRDRRA 459
            DC + +E   C +   L      + PD     +V +         +S  GC K V TS T I CAC H TDFGS +   +  A   +     I+L DLL  L V++ +  + A+F+  CI+GRYLD++D+ A
Sbjct:   55 DCTYWDETLVCDDQNVLRDPATAEWPDFPDGRMVGECDHPGTMGGWSGKGCVKTVHTS-TKIVCACDHATDFGSVVEGIAAGADATISNAGTISLMDLLKILLVILVVFTIDALFVGLCIYGRYLDEKDKAA 185          
BLAST of jgi.p|Trimin1|154384 vs. uniprot
Match: A0A7S2CQ39_9STRA (Hypothetical protein n=2 Tax=Florenciella parvula TaxID=236787 RepID=A0A7S2CQ39_9STRA)

HSP 1 Score: 55.8 bits (133), Expect = 6.360e-6
Identity = 27/80 (33.75%), Postives = 40/80 (50.00%), Query Frame = 1
Query:   79 GQTTTFDCPFAEELYEC-----------SETGDLSYQCGGQAPDCSYYDVVFQQYSTAGCKVVDTSNTTITCACSHLTDF 285
            G   TFDC + +  + C           S T  ++Y C G  P C ++D     +S  GC +   ++T++TC CSHLTDF
Sbjct: 1343 GAVLTFDCAYGDRTHTCDSAAAGVTSIGSTTYWITYVCPGIIPSCLWWDGTADSWSGDGCSLASYTSTSVTCECSHLTDF 1422          
BLAST of jgi.p|Trimin1|154384 vs. uniprot
Match: A0A6P4YRW0_BRABE (polycystic kidney disease protein 1-like 2 n=1 Tax=Branchiostoma belcheri TaxID=7741 RepID=A0A6P4YRW0_BRABE)

HSP 1 Score: 55.8 bits (133), Expect = 6.480e-6
Identity = 34/93 (36.56%), Postives = 57/93 (61.29%), Query Frame = 1
Query:  178 CSYYDVVFQQYSTAGCKVVDTSNTTIT-CACSHLTDFGSRLTQ-TSGMALTVLGQKITLQDLLDNLAVVITLLVVYAIFILACIWGRYLDKRD 450
            C ++D   QQ+S+ GC+V   ++TT+T C C HLT FGS      +  +L +L       ++ +N +VVIT+ V++ +++L  IW R+ DK+D
Sbjct:  843 CLFFDDAQQQWSSDGCEVGPLTSTTLTHCLCDHLTTFGSDFQFFVAPNSLNILSALQGFANIGENPSVVITIGVLFGLYLLIVIWARWEDKKD 935          
BLAST of jgi.p|Trimin1|154384 vs. uniprot
Match: A0A6P4YRX7_BRABE (polycystic kidney disease protein 1-like 2 n=1 Tax=Branchiostoma belcheri TaxID=7741 RepID=A0A6P4YRX7_BRABE)

HSP 1 Score: 55.1 bits (131), Expect = 1.140e-5
Identity = 35/93 (37.63%), Postives = 55/93 (59.14%), Query Frame = 1
Query:  178 CSYYDVVFQQYSTAGCKVVDTSNTTIT-CACSHLTDFGSRLTQ-TSGMALTVLGQKITLQDLLDNLAVVITLLVVYAIFILACIWGRYLDKRD 450
            C ++D   Q +ST GC+V   + TT+T C C HLT FGS      +  +L +L       +++DN +VVIT+ V++ +++L  IW R  DK+D
Sbjct:  165 CLFFDNDQQLWSTEGCEVGSLTTTTLTHCLCDHLTAFGSDFQFFVAPNSLNILEALEGFTNIMDNPSVVITIGVLFGLYLLIVIWARREDKKD 257          
BLAST of jgi.p|Trimin1|154384 vs. uniprot
Match: UPI00193A6F3D (uncharacterized protein LOC120348022 n=1 Tax=Styela clava TaxID=7725 RepID=UPI00193A6F3D)

HSP 1 Score: 55.1 bits (131), Expect = 1.220e-5
Identity = 35/93 (37.63%), Postives = 55/93 (59.14%), Query Frame = 1
Query:  178 CSYYDVVFQQYSTAGCKVV-DTSNTTITCACSHLTDFGSRL-TQTSGMALTVLGQKITLQDLLDNLAVVITLLVVYAIFILACIWGRYLDKRD 450
            C Y++   +++ T GC V  +T+   I C CSHLT FG+      + +   V+ Q I   DL +NLAV++TL+ ++ +FIL  I+ R  DK+D
Sbjct: 3923 CRYWNETLEKWETDGCLVSSETTEDKIVCLCSHLTSFGADFFVAPNPIDFAVIAQNIG--DLANNLAVLLTLVAIFVLFILGLIFFRRKDKQD 4013          
BLAST of jgi.p|Trimin1|154384 vs. uniprot
Match: A0A6P4YRW5_BRABE (LOW QUALITY PROTEIN: polycystic kidney disease protein 1-like 2 n=1 Tax=Branchiostoma belcheri TaxID=7741 RepID=A0A6P4YRW5_BRABE)

HSP 1 Score: 54.3 bits (129), Expect = 2.080e-5
Identity = 33/93 (35.48%), Postives = 57/93 (61.29%), Query Frame = 1
Query:  178 CSYYDVVFQQYSTAGCKVVDTSNTTIT-CACSHLTDFGSRLTQ-TSGMALTVLGQKITLQDLLDNLAVVITLLVVYAIFILACIWGRYLDKRD 450
            C ++D   Q++S+ GC+V   ++TT+T C C HLT FGS      +  +L +L       ++ +N +VVIT+ V++ +++L  IW R+ DK+D
Sbjct:  467 CLFFDDAQQEWSSDGCEVGPLTSTTLTHCLCDHLTAFGSDFQFFVAPNSLNILSALQGFANIGENPSVVITIGVLFGLYLLIVIWARWEDKKD 559          
The following BLAST results are available for this feature:
BLAST of jgi.p|Trimin1|154384 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 14
Match NameE-valueIdentityDescription
A0A835ZAG4_9STRA8.890e-118100.00GPS domain-containing protein (Fragment) n=1 Tax=T... [more]
A0A7S2QVS3_9STRA3.550e-1836.42Hypothetical protein (Fragment) n=1 Tax=Triparma p... [more]
UPI000A2A927E2.600e-835.09polycystic kidney disease protein 1-like 2 n=1 Tax... [more]
A0A210R5K5_MIZYE1.910e-629.29Polycystic kidney disease and receptor for egg jel... [more]
A0A7S2FS85_9STRA2.020e-634.09Hypothetical protein (Fragment) n=1 Tax=Florenciel... [more]
A0A7S2CQ39_9STRA6.360e-633.75Hypothetical protein n=2 Tax=Florenciella parvula ... [more]
A0A6P4YRW0_BRABE6.480e-636.56polycystic kidney disease protein 1-like 2 n=1 Tax... [more]
A0A6P4YRX7_BRABE1.140e-537.63polycystic kidney disease protein 1-like 2 n=1 Tax... [more]
UPI00193A6F3D1.220e-537.63uncharacterized protein LOC120348022 n=1 Tax=Styel... [more]
A0A6P4YRW5_BRABE2.080e-535.48LOW QUALITY PROTEIN: polycystic kidney disease pro... [more]

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
Contig_132contigContig_132:389406..389921 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Tribonema minus UTEX_B_31562021-06-17
Properties
Property NameValue
ProteomeIdTrimin1|154384|gw1.132.75.1
DescriptionRepeat domain in Vibrio, Colwellia, Bradyrhizobium and Shewanella
COG categoryS
Max annot lvl2759|Eukaryota
EggNOG OGs29QRV@1|root,2RX97@2759|Eukaryota
Evalue3.31e-11
Seed ortholog44056.XP_009038271.1
Hectar predicted targeting categoryother localisation
TranscriptId154706
TrackFilteredModels1
ProteinId154384
Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesTypePosition
jgi.p|Trimin1|154384gene_14462Tribonema minus UTEX_B_3156 geneContig_132 389406..389921 -


The following exon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
exon_14462_1exon_14462_1Tribonema minus UTEX_B_3156 exonContig_132 389406..389921 -


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
CDS_14462CDS_14462Tribonema minus UTEX_B_3156 CDSContig_132 389406..389921 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
jgi.p|Trimin1|154384Trimin1|154384|gw1.132.75.1Tribonema minus UTEX_B_3156 polypeptideContig_132 389406..389921 -


Sequences
The following sequences are available for this feature:

spliced messenger RNA

>mRNA_14462 ID=mRNA_14462|Name=jgi.p|Trimin1|154384|organism=Tribonema minus UTEX_B_3156 |type=mRNA|length=516bp|location=Sequence derived from alignment at Contig_132:389406..389921- (Tribonema minus UTEX_B_3156 )|Notes=Excludes all bases but those of type(s): exon.  
TCACCAATCATTTTCACACTGCCTCTGGGCAGCTACAACCTAACAGAGGT
GGTGGTGCTGAATGGTACATGCATTGCGGGCCAGACAACAACATTCGACT
GCCCCTTCGCTGAGGAGCTTTACGAGTGCTCCGAAACCGGTGACCTGAGT
TATCAATGCGGCGGGCAGGCACCGGACTGCTCCTATTACGATGTGGTGTT
CCAGCAGTACAGCACTGCTGGTTGCAAAGTTGTTGACACCAGCAACACCA
CCATCACGTGTGCCTGCAGCCATCTGACGGACTTTGGTAGCAGACTAACG
CAAACTTCAGGGATGGCTCTAACGGTTCTTGGTCAGAAGATCACGCTGCA
GGACCTTCTAGATAACCTGGCCGTGGTCATCACGCTTCTGGTGGTGTACG
CCATCTTCATATTGGCATGCATCTGGGGCAGGTACCTGGACAAGCGCGAT
AGGCGTGCGGAGATACGGGTGGGGGTGGCAGAGGATGAGGCCGATGGCGG
CGGTGCCAAGGGTGCA
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protein sequence of jgi.p|Trimin1|154384

>Trimin1|154384|gw1.132.75.1 ID=Trimin1|154384|gw1.132.75.1|Name=jgi.p|Trimin1|154384|organism=Tribonema minus UTEX_B_3156 |type=polypeptide|length=172bp
SPIIFTLPLGSYNLTEVVVLNGTCIAGQTTTFDCPFAEELYECSETGDLS
YQCGGQAPDCSYYDVVFQQYSTAGCKVVDTSNTTITCACSHLTDFGSRLT
QTSGMALTVLGQKITLQDLLDNLAVVITLLVVYAIFILACIWGRYLDKRD
RRAEIRVGVAEDEADGGGAKGA
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mRNA from alignment at Contig_132:389406..389921-

Legend: exonpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_14462 ID=mRNA_14462|Name=jgi.p|Trimin1|154384|organism=Tribonema minus UTEX_B_3156 |type=mRNA|length=516bp|location=Sequence derived from alignment at Contig_132:389406..389921- (Tribonema minus UTEX_B_3156 )
TCACCAATCATTTTCACACTGCCTCTGGGCAGCTACAACCTAACAGAGGT GGTGGTGCTGAATGGTACATGCATTGCGGGCCAGACAACAACATTCGACT GCCCCTTCGCTGAGGAGCTTTACGAGTGCTCCGAAACCGGTGACCTGAGT TATCAATGCGGCGGGCAGGCACCGGACTGCTCCTATTACGATGTGGTGTT CCAGCAGTACAGCACTGCTGGTTGCAAAGTTGTTGACACCAGCAACACCA CCATCACGTGTGCCTGCAGCCATCTGACGGACTTTGGTAGCAGACTAACG CAAACTTCAGGGATGGCTCTAACGGTTCTTGGTCAGAAGATCACGCTGCA GGACCTTCTAGATAACCTGGCCGTGGTCATCACGCTTCTGGTGGTGTACG CCATCTTCATATTGGCATGCATCTGGGGCAGGTACCTGGACAAGCGCGAT AGGCGTGCGGAGATACGGGTGGGGGTGGCAGAGGATGAGGCCGATGGCGG CGGTGCCAAGGGTGCA
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Coding sequence (CDS) from alignment at Contig_132:389406..389921-

>mRNA_14462 ID=mRNA_14462|Name=jgi.p|Trimin1|154384|organism=Tribonema minus UTEX_B_3156 |type=CDS|length=516bp|location=Sequence derived from alignment at Contig_132:389406..389921- (Tribonema minus UTEX_B_3156 )
TCACCAATCATTTTCACACTGCCTCTGGGCAGCTACAACCTAACAGAGGT
GGTGGTGCTGAATGGTACATGCATTGCGGGCCAGACAACAACATTCGACT
GCCCCTTCGCTGAGGAGCTTTACGAGTGCTCCGAAACCGGTGACCTGAGT
TATCAATGCGGCGGGCAGGCACCGGACTGCTCCTATTACGATGTGGTGTT
CCAGCAGTACAGCACTGCTGGTTGCAAAGTTGTTGACACCAGCAACACCA
CCATCACGTGTGCCTGCAGCCATCTGACGGACTTTGGTAGCAGACTAACG
CAAACTTCAGGGATGGCTCTAACGGTTCTTGGTCAGAAGATCACGCTGCA
GGACCTTCTAGATAACCTGGCCGTGGTCATCACGCTTCTGGTGGTGTACG
CCATCTTCATATTGGCATGCATCTGGGGCAGGTACCTGGACAAGCGCGAT
AGGCGTGCGGAGATACGGGTGGGGGTGGCAGAGGATGAGGCCGATGGCGG
CGGTGCCAAGGGTGCA
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