mRNA_14461 (mRNA) Tribonema minus UTEX_B_3156

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
Namejgi.p|Trimin1|149032
Unique NamemRNA_14461
TypemRNA
OrganismTribonema minus UTEX_B_3156 (Tribonema minus UTEX_B_3156 )
Homology
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BLAST of jgi.p|Trimin1|149032 vs. uniprot
Match: A0A835ZF52_9STRA (Uncharacterized protein (Fragment) n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A835ZF52_9STRA)

HSP 1 Score: 339 bits (870), Expect = 5.120e-113
Identity = 326/326 (100.00%), Postives = 326/326 (100.00%), Query Frame = 1 
Query:    1 LCRLGCGADLSKTSAVLHEEDECLEKEVACSXXXXXXXXXXXXXXXXXXXXXXXXXXXEFCSAVVLAKNLDAHKAATCPQLRLCRCGAHVVRSRFAEHKSTECPYRSVACTLGCXXXXXXXXXXXXXXXXXXXXXWXXLCGLTMPVSARAVHERDECPERVVTPCLQGXXXXXXXXXXXXXXXXXXXLRTLICTCGDPIFARDVDSHRINECELRTLACMDCXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXAATVAEHTAAEGAXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXGRGCGQRVRASDCAHHESRLC 978
            LCRLGCGADLSKTSAVLHEEDECLEKEVACSXXXXXXXXXXXXXXXXXXXXXXXXXXXEFCSAVVLAKNLDAHKAATCPQLRLCRCGAHVVRSRFAEHKSTECPYRSVACTLGCXXXXXXXXXXXXXXXXXXXXXWXXLCGLTMPVSARAVHERDECPERVVTPCLQGXXXXXXXXXXXXXXXXXXXLRTLICTCGDPIFARDVDSHRINECELRTLACMDCXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXAATVAEHTAAEGAXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXGRGCGQRVRASDCAHHESRLC
Sbjct:    1 LCRLGCGADLSKTSAVLHEEDECLEKEVACSXXXXXXXXXXXXXXXXXXXXXXXXXXXEFCSAVVLAKNLDAHKAATCPQLRLCRCGAHVVRSRFAEHKSTECPYRSVACTLGCXXXXXXXXXXXXXXXXXXXXXWXXLCGLTMPVSARAVHERDECPERVVTPCLQGXXXXXXXXXXXXXXXXXXXLRTLICTCGDPIFARDVDSHRINECELRTLACMDCXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXAATVAEHTAAEGAXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXGRGCGQRVRASDCAHHESRLC 326
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BLAST of jgi.p|Trimin1|149032 vs. uniprot
Match: A0A7S4DB10_HETAK (Hypothetical protein n=1 Tax=Heterosigma akashiwo TaxID=2829 RepID=A0A7S4DB10_HETAK)

HSP 1 Score: 92.4 bits (228), Expect = 6.970e-17
Identity = 73/222 (32.88%), Postives = 95/222 (42.79%), Query Frame = 1 
Query:    4 CRLGCGADLSKTSAVL--HEEDECLEKEVACSXXXXXXXXXXXXXXXXXXXXXXXXXXXEFCSAVVLAKNLDAHKAATCPQLRLCRCGAHVVRSRFAEHKSTECPYRSVACTLGCXXXXXXXXXXXXXXXXXXXXXWXXLCGLTMPVSARAVHERDECPERVVTPCLQGXXXXXXXXXXXXXXXXXXXLRTLICTCGDPIFARDVDSHRINECELRTLACMD 663
            CRLGCG  L + +A    HE D C E+ V C              XXXXXXXXXXXXXX  C A V  +  ++H+ ATCP LR+CRCGAHV++  +  H+ T+CPYR V C   C                     W  LCG  +P   +                  G                   +R  IC CG  +  +D   H + EC   +LAC++
Sbjct: 1575 CRLGCGTVLREGAAAAEEHEADACPERLVGCRNRCGEVVPARALAXXXXXXXXXXXXXXXHCGAAVKERQRESHEGATCPLLRVCRCGAHVLKDAYRAHRETDCPYRLVKCRFNCGKEMEAMQLKIHESVECELRTWECLCGDRLPFKHKTKXXXXXXXXXXXKCSACGEEMTEGDRKEHETDLCV--MRPWICGCGITVPIKDKSHHEMYECSDPSLACLN 1794
The following BLAST results are available for this feature:
BLAST of jgi.p|Trimin1|149032 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 2
Match NameE-valueIdentityDescription
A0A835ZF52_9STRA5.120e-113100.00Uncharacterized protein (Fragment) n=1 Tax=Tribone... [more]
A0A7S4DB10_HETAK6.970e-1732.88Hypothetical protein n=1 Tax=Heterosigma akashiwo ... [more]
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
Contig_132contigContig_132:384298..387848 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Tribonema minus UTEX_B_31562021-06-17
Properties
Property NameValue
ProteomeIdTrimin1|149032|gw1.132.49.1
DescriptionAnkyrin, TRAF-type zinc finger protein. Source PGD
COG categoryT
Max annot lvl121069|Pythiales
EggNOG OGsCOG0666@1|root,KOG0297@1|root,KOG0297@2759|Eukaryota,KOG0504@2759|Eukaryota,KOG0508@2759|Eukaryota,1MDNU@121069|Pythiales
Evalue0.000159
Seed ortholog65071.PYU1_T004774
Hectar predicted targeting categoryother localisation
TranscriptId149354
TrackFilteredModels1
ProteinId149032
Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesTypePosition
jgi.p|Trimin1|149032gene_14461Tribonema minus UTEX_B_3156 geneContig_132 384298..387848 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
jgi.p|Trimin1|149032Trimin1|149032|gw1.132.49.1Tribonema minus UTEX_B_3156 polypeptideContig_132 384298..387848 -


The following exon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
exon_14461_4exon_14461_4Tribonema minus UTEX_B_3156 exonContig_132 384298..384387 -
exon_14461_3exon_14461_3Tribonema minus UTEX_B_3156 exonContig_132 385770..386169 -
exon_14461_2exon_14461_2Tribonema minus UTEX_B_3156 exonContig_132 386945..387288 -
exon_14461_1exon_14461_1Tribonema minus UTEX_B_3156 exonContig_132 387705..387848 -


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
CDS_14461CDS_14461Tribonema minus UTEX_B_3156 CDSContig_132 387705..387848 -


Sequences
The following sequences are available for this feature:

spliced messenger RNA

>mRNA_14461 ID=mRNA_14461|Name=jgi.p|Trimin1|149032|organism=Tribonema minus UTEX_B_3156 |type=mRNA|length=978bp|location=Sequence derived from alignment at Contig_132:384298..387848- (Tribonema minus UTEX_B_3156 )|Notes=Excludes all bases but those of type(s): exon.  
CTATGCCGGCTGGGTTGCGGTGCAGACCTCTCAAAGACATCTGCGGTCTT
GCATGAGGAGGATGAATGCCTGGAGAAAGAAGTGGCATGCAGCAAGGGCT
GTGGCGCGTCAGTCAAGCGAAAGGCGATGGTGGAACATCAACACGATCAC
TGCCATGAGCGTGATGTGGCTTGTGAGTTCTGCTCTGCAGTGGTGCTGGC
CAAGAACCTGGACGCACACAAGGCAGCCACATGTCCCCAACTCCGCTTGT
GCCGCTGCGGCGCACATGTGGTTCGCAGCAGATTTGCAGAGCACAAGAGC
ACTGAGTGTCCCTACCGCAGTGTGGCGTGCACTTTGGGCTGTGGAGCTGA
GATGGAGGCCATCACGCTGGAGGTGCACAAGCAGATGCGGTGCCCTCTGC
GACAGTGGACATGCCTGTGCGGGCTTACAATGCCTGTCTCTGCTCGGGCA
GTGCACGAGCGTGATGAATGCCCCGAGCGCGTCGTCACGCCGTGCCTACA
GGGATGCGGCCTGGTTGCACGCCGCGAAGCACGCGCTGCACATGAGCGAG
AGACCTGCCCACTGAGGACCCTCATCTGCACCTGCGGCGACCCTATTTTT
GCGCGGGACGTGGACTCACACCGCATCAACGAGTGCGAGCTGCGCACGCT
GGCTTGCATGGACTGCGGCCAGCGCATGGCGTCCAAGGATGTCAACAAGC
ACCACAGCAGTTGCGCACAGCGCCTGATCAGTTGCCCATTGGAGTGCGGG
GCTCGCATTCCTGCGGCAACAGTGGCTGAGCACACGGCGGCTGAGGGCGC
ATGCACAAACCGCTATGTGGCGTGTGACGCTTGCGGCGTGGACGGCATCC
CTATGGCTCTCATGGCAGACCACCGTGCATCAATGTCAGAGTGTCCGGCA
CGCTATGTACTGTGTGGCCGAGGATGTGGGCAGCGTGTGCGGGCATCAGA
TTGTGCGCACCATGAGAGCCGGCTTTGC
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protein sequence of jgi.p|Trimin1|149032

>Trimin1|149032|gw1.132.49.1 ID=Trimin1|149032|gw1.132.49.1|Name=jgi.p|Trimin1|149032|organism=Tribonema minus UTEX_B_3156 |type=polypeptide|length=326bp
LCRLGCGADLSKTSAVLHEEDECLEKEVACSKGCGASVKRKAMVEHQHDH
CHERDVACEFCSAVVLAKNLDAHKAATCPQLRLCRCGAHVVRSRFAEHKS
TECPYRSVACTLGCGAEMEAITLEVHKQMRCPLRQWTCLCGLTMPVSARA
VHERDECPERVVTPCLQGCGLVARREARAAHERETCPLRTLICTCGDPIF
ARDVDSHRINECELRTLACMDCGQRMASKDVNKHHSSCAQRLISCPLECG
ARIPAATVAEHTAAEGACTNRYVACDACGVDGIPMALMADHRASMSECPA
RYVLCGRGCGQRVRASDCAHHESRLC
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mRNA from alignment at Contig_132:384298..387848-

Legend: polypeptideexonCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_14461 ID=mRNA_14461|Name=jgi.p|Trimin1|149032|organism=Tribonema minus UTEX_B_3156 |type=mRNA|length=3551bp|location=Sequence derived from alignment at Contig_132:384298..387848- (Tribonema minus UTEX_B_3156 )
CTATGCCGGCTGGGTTGCGGTGCAGACCTCTCAAAGACATCTGCGGTCTT
GCATGAGGAGGATGAATGCCTGGAGAAAGAAGTGGCATGCAGCAAGGGCT
GTGGCGCGTCAGTCAAGCGAAAGGCGATGGTGGAACATCAACACGTGAGA
AATATTGTGTTGTGATGCCCGCCGAACACAGTAATGAGGTTGTTACATTT
TATTGCCCTTGGTGAGAAAAGACATCTACCTTGCGCACTGAAAAACGCCA
CAACGCAACTATCATGAACAACAGCGCAGGCGGTTTGCTGCGACAGCTAT
GCTTCAGGATGCGTAGTGCTGTACTTAATAATACAGCTGCGTTTCACAAT
GCAGTGGTGCGCTTCACTTCAAATTTACTTGGTCTAGTTTTCGGAAAGAT
GGCAAATTAGTACATACAGTTTCACACAAATCCAGCTGGTTTTGTCATGC
TTCTCAACATCAACAGCCTCCGTGACGGAATTCATTACACTGCCTTTTCA
ACGATGGCAGCACTCTCATCCACCTCTGGACTTTGTACGCTCTGTTGTGT
GTGGGTGCAGGATCACTGCCATGAGCGTGATGTGGCTTGTGAGTTCTGCT
CTGCAGTGGTGCTGGCCAAGAACCTGGACGCACACAAGGCAGCCACATGT
CCCCAACTCCGCTTGTGCCGCTGCGGCGCACATGTGGTTCGCAGCAGATT
TGCAGAGCACAAGAGCACTGAGTGTCCCTACCGCAGTGTGGCGTGCACTT
TGGGCTGTGGAGCTGAGATGGAGGCCATCACGCTGGAGGTGCACAAGCAG
ATGCGGTGCCCTCTGCGACAGTGGACATGCCTGTGCGGGCTTACAATGCC
TGTCTCTGCTCGGGCAGTGCACGAGCGTGATGAATGCCCCGAGCGCGTCG
TCACGTGTGCGCTTTGCAAGGAGGAGCTGGCGGAGGCAGACAGGGCTGAG
CATGATGCGGTGAGCAGAAGCGGACGAGTACCCCTGCTGAAGTGAAGCAC
TTGTTTGCGTTTGAGAGAACGCCACCTCCAGCACTACAGTAGTCGACTGC
TGACATGTGTGCGAATGGCCGCACGTGCCACTGAAAAACATGAACACAAC
ATGGCTAGAGTGTTGCTGCCAACTGTTTGTATGCAAAGCCAAGCATACAG
CTGAAGAGTCCATGAAAAGCTTGAGCTCCAAGGTGTTTCTGCATTGTGCT
TTAAAGTAAAACACGTTCCTACATGAGCTGGTCTTGACATGCACTGCGTC
ATGCTGCTGCTTCTCAGGAGCTATGCCCCATGCGGCCCTGGCTGTGCGAG
TGTGGCCAACGTATGCCATTCAGTGACCGCGCAGTGCATGAGCGCTATGA
CTGTCAGGATCCATCGAGGTGAGGCCCTTTCTGTGCCACATCGGCTGAAT
GTCGCATTGCTACGTCCAAGCAATTGCTACAGATGATGTGATCAGGAACA
CATGGCATTGGGCATGTATACACATCTTCATGAAGTGACAGCTTGCTCAA
CATGTGGTCAGGCCCTCCACACCTCATCCATCTCACCTGCGTGCGGCTTT
TTGGAGTGATCAGCAGCATGTTTGGCACAGCATGGTTGTTGACCTTTTGT
GCTTACACCACTACAGTTTACCTGCCATAATCCAGTACCAACAAATCGAT
GTAACCGGTTTTCTGCCTTTTATCTACAGGCCGTGCCTACAGGGATGCGG
CCTGGTTGCACGCCGCGAAGCACGCGCTGCACATGAGCGAGAGACCTGCC
CACTGAGGACCCTCATCTGCACCTGCGGCGACCCTATTTTTGCGCGGGAC
GTGGACTCACACCGCATCAACGAGTGCGAGCTGCGCACGCTGGCTTGCAT
GGACTGCGGCCAGCGCATGGCGTCCAAGGATGTCAACAAGCACCACAGCA
GTTGCGCACAGCGCCTGATCAGTTGCCCATTGGAGTGCGGGGCTCGCATT
CCTGCGGCAACAGTGGCTGAGCACACGGCGGCTGAGGGCGCATGCACAAA
CCGCTATGTGGCGTGTGACGCTTGCGGCGTGGACGGCATCCCTATGGCTC
TCATGGCAGACCACCGTGCATCAATGTCAGTACCACAAAACTAGAAGATA
CTGGTGCAGTTGCGCTACACTTGATGCTTTGAGTGCACTCTTAAAAGGAA
GCAGTCATTACTTGACATGTCGTTCTCAGTCAAATACCTCTCCAACAGCA
GCCCCCATGGTCAGACTGTTATAAATAAGTGGCTGGGCTGCTATATCGAA
ATGTTGCTGTTCTGATACCGACTGCCTTGAGTACATCACCTGATGGAGGT
CAACCTCATAGATAAGGCCTAGCTCAAAATACAGCTTGCACACTGACGTG
CTAGTCACAACACAAAGATCACTGATGTGGTCCTGCAACCGTTCCCTTCT
TGTGCAGGTGCAAGGTGCTGGTGTGCAGGGCGTGCAGTCAGCTGGTATTG
CGAGACAACATGGAGGAACATGTGGCGGGAGAATGTGTCATGCGCGAGAT
GGCTTGCACATTGTGCCAGGTAAATCACAATTTATAGGGTCTGTATGTCT
GTCGGTCTGTCTGTCTGACAAAATGTGCCTCTACTTTGATGTACTTCGTA
TCTCATTGTCGGGATGCGCCCTTGATGCAATCAAGCTTAGATGGCATGGA
AGCAATGCAGCCCATTTCGGCTTCTCAGCTGCCTTGTTGACAGTGGAGTG
TTTGGGCGTTTGTTGTCAGCAAGTGGCACGTGTCAGCAGCACATTCACAT
GGTGAACTGATAGTTTGAGCACAAACCATGGACAAGATCACATATATGCA
GCCTGAAACGCCCTGCAAAGTTTCTGGTTGTGCATTTGGCATACTATACT
TGAAGTACAACGCCAATTTCTGGAGCTTTTACAGACTTCATGGTCTGTAG
TCACGTCACCACACAAGCTGCCGTGAAGTTGGTCATGTCTACTGCCTCAA
ATCCATGATGCCTTCATTGGCACAAAAGTGTATGGCGCAGTGCACATTGT
AGTGCAGCTGTGACCCCAATGCATTGCATGCTTGCTGCAGCTGATCACAG
CATTGATGTTGCAATATCTCGAAGTGATAAAACACACATTGCTTCATCAT
GTCATAGCGTCCAGAGATCACATCCATCATACAAGCTTCAGCTACCTAGC
GTCAGCAACCTCCATCATTTGAAAACTGGTAGTAGGCAGGGTGGCTAAAG
TGTTGCATACACTCGTCCTTTGTCTCACGTTGCATCTTCACAACATGTCC
ATCGCATCGCCTGTCTGCTGTGCTGCCTTGGGTTCACATGGCGACATTTC
TGAACTTGTCCACGATGCGCGCTTTGCAACCACCACAGGAGATGGTGCCG
CTCAAGAAGATGACTGCGCACCAGATGAGCGAGTGCACACTCAGGGAGGT
TGCTTGCACACAGTGCAGCGAGTCAGTGGTCAGCAACGATTTGGAGCAGC
ACAAGCTTGAGGAGTGTCCGGCACGCTATGTACTGTGTGGCCGAGGATGT
GGGCAGCGTGTGCGGGCATCAGATTGTGCGCACCATGAGAGCCGGCTTTG
C
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Coding sequence (CDS) from alignment at Contig_132:384298..387848-

>mRNA_14461 ID=mRNA_14461|Name=jgi.p|Trimin1|149032|organism=Tribonema minus UTEX_B_3156 |type=CDS|length=978bp|location=Sequence derived from alignment at Contig_132:384298..387848- (Tribonema minus UTEX_B_3156 )
CTATGCCGGCTGGGTTGCGGTGCAGACCTCTCAAAGACATCTGCGGTCTT
GCATGAGGAGGATGAATGCCTGGAGAAAGAAGTGGCATGCAGCAAGGGCT
GTGGCGCGTCAGTCAAGCGAAAGGCGATGGTGGAACATCAACACGATCAC
TGCCATGAGCGTGATGTGGCTTGTGAGTTCTGCTCTGCAGTGGTGCTGGC
CAAGAACCTGGACGCACACAAGGCAGCCACATGTCCCCAACTCCGCTTGT
GCCGCTGCGGCGCACATGTGGTTCGCAGCAGATTTGCAGAGCACAAGAGC
ACTGAGTGTCCCTACCGCAGTGTGGCGTGCACTTTGGGCTGTGGAGCTGA
GATGGAGGCCATCACGCTGGAGGTGCACAAGCAGATGCGGTGCCCTCTGC
GACAGTGGACATGCCTGTGCGGGCTTACAATGCCTGTCTCTGCTCGGGCA
GTGCACGAGCGTGATGAATGCCCCGAGCGCGTCGTCACGCCGTGCCTACA
GGGATGCGGCCTGGTTGCACGCCGCGAAGCACGCGCTGCACATGAGCGAG
AGACCTGCCCACTGAGGACCCTCATCTGCACCTGCGGCGACCCTATTTTT
GCGCGGGACGTGGACTCACACCGCATCAACGAGTGCGAGCTGCGCACGCT
GGCTTGCATGGACTGCGGCCAGCGCATGGCGTCCAAGGATGTCAACAAGC
ACCACAGCAGTTGCGCACAGCGCCTGATCAGTTGCCCATTGGAGTGCGGG
GCTCGCATTCCTGCGGCAACAGTGGCTGAGCACACGGCGGCTGAGGGCGC
ATGCACAAACCGCTATGTGGCGTGTGACGCTTGCGGCGTGGACGGCATCC
CTATGGCTCTCATGGCAGACCACCGTGCATCAATGTCAGAGTGTCCGGCA
CGCTATGTACTGTGTGGCCGAGGATGTGGGCAGCGTGTGCGGGCATCAGA
TTGTGCGCACCATGAGAGCCGGCTTTGC
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