mRNA_14419 (mRNA) Tribonema minus UTEX_B_3156

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
Namejgi.p|Trimin1|175985
Unique NamemRNA_14419
TypemRNA
OrganismTribonema minus UTEX_B_3156 (Tribonema minus UTEX_B_3156 )
Homology
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BLAST of jgi.p|Trimin1|175985 vs. uniprot
Match: A0A836CKN9_9STRA (Uncharacterized protein n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A836CKN9_9STRA)

HSP 1 Score: 589 bits (1518), Expect = 7.720e-213
Identity = 288/288 (100.00%), Postives = 288/288 (100.00%), Query Frame = 1 
Query:    1 MRISLTSSPSSCNAVHRLCHVAGPALVLYEHIDRDDFGTSVDNMRFFLKVGLLPPHRATFIFIATGCHSIAFPTALPNVHVIDRPTSSRCGTIGAWHAGLIHAHSIAGGLKFSHFVLLSSRVRGPFLPSWAPPTLDWLHHYSVLLKPPVALVGPIVSCEHGLSSLHLKGLPLVIERRAALEHLLPILSTCPGSEADTTDLLASLSHRLLEAGHSLRALAQGFLPNIEASIASWPLLRRGCSRGPPFHPHPLESLFVVTSTALRDLLPPLLTQEVVRYTRLVDLGKSSS 864
            MRISLTSSPSSCNAVHRLCHVAGPALVLYEHIDRDDFGTSVDNMRFFLKVGLLPPHRATFIFIATGCHSIAFPTALPNVHVIDRPTSSRCGTIGAWHAGLIHAHSIAGGLKFSHFVLLSSRVRGPFLPSWAPPTLDWLHHYSVLLKPPVALVGPIVSCEHGLSSLHLKGLPLVIERRAALEHLLPILSTCPGSEADTTDLLASLSHRLLEAGHSLRALAQGFLPNIEASIASWPLLRRGCSRGPPFHPHPLESLFVVTSTALRDLLPPLLTQEVVRYTRLVDLGKSSS
Sbjct:    1 MRISLTSSPSSCNAVHRLCHVAGPALVLYEHIDRDDFGTSVDNMRFFLKVGLLPPHRATFIFIATGCHSIAFPTALPNVHVIDRPTSSRCGTIGAWHAGLIHAHSIAGGLKFSHFVLLSSRVRGPFLPSWAPPTLDWLHHYSVLLKPPVALVGPIVSCEHGLSSLHLKGLPLVIERRAALEHLLPILSTCPGSEADTTDLLASLSHRLLEAGHSLRALAQGFLPNIEASIASWPLLRRGCSRGPPFHPHPLESLFVVTSTALRDLLPPLLTQEVVRYTRLVDLGKSSS 288
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BLAST of jgi.p|Trimin1|175985 vs. uniprot
Match: A0A4Q3E7V7_9RICK (Uncharacterized protein n=1 Tax=Rickettsiales bacterium TaxID=2026788 RepID=A0A4Q3E7V7_9RICK)

HSP 1 Score: 55.8 bits (133), Expect = 2.250e-5
Identity = 47/142 (33.10%), Postives = 67/142 (47.18%), Query Frame = 1 
Query:   64 AGPALVLYEHIDRDDFGTSVDNMRFFLKVGLLPPHRATFIFIATGCHSIA--FPTALPNVHVIDRPTSSRC---GTIGAWHAGLIHAHSIAGGLKFSHFVLLSSRVRGPFLPSWAPPTLDWLHHYSVLLKPPVALVGPIVSC 474
            A   LV+Y H++      +  N+ FF+K GL     A FIFI      I    P   PN+ ++   T  +C   G+IG    G+I A +      +S F+++SS +RGPFLP W+  T  W   +   L     LVG   SC
Sbjct:   16 ANRPLVIYTHVESP---ITRRNILFFMKHGL--HSAADFIFIINVDSDIDGFLPENTPNIRIVK--TKEKCLNRGSIG----GIIGARTERYLDVYSKFIIMSSNLRGPFLPLWS--TECWTDRFISKLNDETKLVGTGYSC 144
The following BLAST results are available for this feature:
BLAST of jgi.p|Trimin1|175985 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 2
Match NameE-valueIdentityDescription
A0A836CKN9_9STRA7.720e-213100.00Uncharacterized protein n=1 Tax=Tribonema minus Ta... [more]
A0A4Q3E7V7_9RICK2.250e-533.10Uncharacterized protein n=1 Tax=Rickettsiales bact... [more]
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
Contig_132contigContig_132:26900..27766 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Tribonema minus UTEX_B_31562021-06-17
Properties
Property NameValue
ProteomeIdTrimin1|175985|e_gw1.132.24.1
Max annot lvl4751|Fungi
EggNOG OGs2BTJG@1|root,2S214@2759|Eukaryota,39FEI@33154|Opisthokonta,3NUYH@4751|Fungi,3QTB9@4890|Ascomycota
Evalue3.14e-11
Seed ortholog430498.S8AEF6
Hectar predicted targeting categoryother localisation
TranscriptId176307
TrackFilteredModels1
ProteinId175985
Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesTypePosition
jgi.p|Trimin1|175985gene_14419Tribonema minus UTEX_B_3156 geneContig_132 26900..27766 -


The following exon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
exon_14419_1exon_14419_1Tribonema minus UTEX_B_3156 exonContig_132 26900..27766 -


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
CDS_14419CDS_14419Tribonema minus UTEX_B_3156 CDSContig_132 26900..27766 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
jgi.p|Trimin1|175985Trimin1|175985|e_gw1.132.24.1Tribonema minus UTEX_B_3156 polypeptideContig_132 26900..27766 -


Sequences
The following sequences are available for this feature:

spliced messenger RNA

>mRNA_14419 ID=mRNA_14419|Name=jgi.p|Trimin1|175985|organism=Tribonema minus UTEX_B_3156 |type=mRNA|length=867bp|location=Sequence derived from alignment at Contig_132:26900..27766- (Tribonema minus UTEX_B_3156 )|Notes=Excludes all bases but those of type(s): exon.  
ATGCGCATCTCCCTAACTAGCTCACCATCATCGTGCAACGCTGTCCACCG
GCTTTGCCACGTTGCAGGCCCAGCACTTGTGCTGTATGAGCATATCGACC
GTGATGACTTTGGCACCTCAGTGGACAACATGCGCTTTTTCCTCAAAGTG
GGTCTACTACCACCGCACCGAGCGACCTTCATCTTCATAGCTACAGGGTG
TCACAGCATAGCCTTTCCGACGGCCCTTCCCAATGTGCATGTAATTGACA
GGCCCACTAGCTCACGTTGCGGCACTATTGGTGCCTGGCATGCTGGGCTG
ATACATGCCCACAGCATCGCAGGAGGACTCAAATTTTCACACTTTGTACT
TCTCAGCTCCCGTGTGAGGGGCCCATTTCTGCCCTCCTGGGCCCCTCCCA
CCCTTGATTGGCTTCACCATTATTCTGTCCTACTGAAGCCGCCCGTAGCA
CTGGTAGGCCCCATAGTGTCATGCGAGCATGGCCTGAGCTCGTTGCACTT
GAAGGGGCTGCCTCTGGTGATTGAACGGCGTGCAGCGCTGGAACACCTGC
TGCCCATCCTGTCTACATGCCCTGGCTCAGAAGCGGACACCACAGACCTA
CTGGCATCCCTCTCTCATCGCCTGCTGGAAGCCGGCCACTCCCTGCGAGC
TCTTGCCCAGGGCTTTCTGCCCAACATAGAGGCCAGCATTGCTAGCTGGC
CTCTGTTGCGGCGAGGCTGTTCTCGAGGGCCGCCGTTTCACCCTCACCCG
CTGGAGTCGCTGTTTGTTGTCACCAGCACTGCGCTCAGGGATCTGCTGCC
CCCGCTGCTGACACAGGAGGTGGTGCGATACACTCGGCTGGTTGACCTCG
GTAAGTCCAGTAGTTGA
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protein sequence of jgi.p|Trimin1|175985

>Trimin1|175985|e_gw1.132.24.1 ID=Trimin1|175985|e_gw1.132.24.1|Name=jgi.p|Trimin1|175985|organism=Tribonema minus UTEX_B_3156 |type=polypeptide|length=289bp
MRISLTSSPSSCNAVHRLCHVAGPALVLYEHIDRDDFGTSVDNMRFFLKV
GLLPPHRATFIFIATGCHSIAFPTALPNVHVIDRPTSSRCGTIGAWHAGL
IHAHSIAGGLKFSHFVLLSSRVRGPFLPSWAPPTLDWLHHYSVLLKPPVA
LVGPIVSCEHGLSSLHLKGLPLVIERRAALEHLLPILSTCPGSEADTTDL
LASLSHRLLEAGHSLRALAQGFLPNIEASIASWPLLRRGCSRGPPFHPHP
LESLFVVTSTALRDLLPPLLTQEVVRYTRLVDLGKSSS*
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mRNA from alignment at Contig_132:26900..27766-

Legend: exonpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_14419 ID=mRNA_14419|Name=jgi.p|Trimin1|175985|organism=Tribonema minus UTEX_B_3156 |type=mRNA|length=867bp|location=Sequence derived from alignment at Contig_132:26900..27766- (Tribonema minus UTEX_B_3156 )
ATGCGCATCTCCCTAACTAGCTCACCATCATCGTGCAACGCTGTCCACCG
GCTTTGCCACGTTGCAGGCCCAGCACTTGTGCTGTATGAGCATATCGACC
GTGATGACTTTGGCACCTCAGTGGACAACATGCGCTTTTTCCTCAAAGTG
GGTCTACTACCACCGCACCGAGCGACCTTCATCTTCATAGCTACAGGGTG
TCACAGCATAGCCTTTCCGACGGCCCTTCCCAATGTGCATGTAATTGACA
GGCCCACTAGCTCACGTTGCGGCACTATTGGTGCCTGGCATGCTGGGCTG
ATACATGCCCACAGCATCGCAGGAGGACTCAAATTTTCACACTTTGTACT
TCTCAGCTCCCGTGTGAGGGGCCCATTTCTGCCCTCCTGGGCCCCTCCCA
CCCTTGATTGGCTTCACCATTATTCTGTCCTACTGAAGCCGCCCGTAGCA
CTGGTAGGCCCCATAGTGTCATGCGAGCATGGCCTGAGCTCGTTGCACTT
GAAGGGGCTGCCTCTGGTGATTGAACGGCGTGCAGCGCTGGAACACCTGC
TGCCCATCCTGTCTACATGCCCTGGCTCAGAAGCGGACACCACAGACCTA
CTGGCATCCCTCTCTCATCGCCTGCTGGAAGCCGGCCACTCCCTGCGAGC
TCTTGCCCAGGGCTTTCTGCCCAACATAGAGGCCAGCATTGCTAGCTGGC
CTCTGTTGCGGCGAGGCTGTTCTCGAGGGCCGCCGTTTCACCCTCACCCG
CTGGAGTCGCTGTTTGTTGTCACCAGCACTGCGCTCAGGGATCTGCTGCC
CCCGCTGCTGACACAGGAGGTGGTGCGATACACTCGGCTGGTTGACCTCG
GTAAGTCCAGTAGTTGA
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Coding sequence (CDS) from alignment at Contig_132:26900..27766-

>mRNA_14419 ID=mRNA_14419|Name=jgi.p|Trimin1|175985|organism=Tribonema minus UTEX_B_3156 |type=CDS|length=867bp|location=Sequence derived from alignment at Contig_132:26900..27766- (Tribonema minus UTEX_B_3156 )
ATGCGCATCTCCCTAACTAGCTCACCATCATCGTGCAACGCTGTCCACCG
GCTTTGCCACGTTGCAGGCCCAGCACTTGTGCTGTATGAGCATATCGACC
GTGATGACTTTGGCACCTCAGTGGACAACATGCGCTTTTTCCTCAAAGTG
GGTCTACTACCACCGCACCGAGCGACCTTCATCTTCATAGCTACAGGGTG
TCACAGCATAGCCTTTCCGACGGCCCTTCCCAATGTGCATGTAATTGACA
GGCCCACTAGCTCACGTTGCGGCACTATTGGTGCCTGGCATGCTGGGCTG
ATACATGCCCACAGCATCGCAGGAGGACTCAAATTTTCACACTTTGTACT
TCTCAGCTCCCGTGTGAGGGGCCCATTTCTGCCCTCCTGGGCCCCTCCCA
CCCTTGATTGGCTTCACCATTATTCTGTCCTACTGAAGCCGCCCGTAGCA
CTGGTAGGCCCCATAGTGTCATGCGAGCATGGCCTGAGCTCGTTGCACTT
GAAGGGGCTGCCTCTGGTGATTGAACGGCGTGCAGCGCTGGAACACCTGC
TGCCCATCCTGTCTACATGCCCTGGCTCAGAAGCGGACACCACAGACCTA
CTGGCATCCCTCTCTCATCGCCTGCTGGAAGCCGGCCACTCCCTGCGAGC
TCTTGCCCAGGGCTTTCTGCCCAACATAGAGGCCAGCATTGCTAGCTGGC
CTCTGTTGCGGCGAGGCTGTTCTCGAGGGCCGCCGTTTCACCCTCACCCG
CTGGAGTCGCTGTTTGTTGTCACCAGCACTGCGCTCAGGGATCTGCTGCC
CCCGCTGCTGACACAGGAGGTGGTGCGATACACTCGGCTGGTTGACCTCG
GTAAGTCCAGTAGTTGA
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