mRNA_1440 (mRNA) Tribonema minus UTEX_B_3156

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
Namejgi.p|Trimin1|150613
Unique NamemRNA_1440
TypemRNA
OrganismTribonema minus UTEX_B_3156 (Tribonema minus UTEX_B_3156 )
Homology
BLAST of jgi.p|Trimin1|150613 vs. uniprot
Match: A0A836CJD1_9STRA (Cyclin-like protein (Fragment) n=2 Tax=Tribonema minus TaxID=303371 RepID=A0A836CJD1_9STRA)

HSP 1 Score: 307 bits (786), Expect = 1.300e-105
Identity = 157/157 (100.00%), Postives = 157/157 (100.00%), Query Frame = 1
Query:    1 ISPSMRSTLFGWVTSAHYELILSPATLHLTFSIIDRYCALEFVDAQELRLLGAASLMMAAKYEETMTHPVRTYLRVCGMVYQRHELLGMEQRVLERLQYRLTVPTTYTFIAYAIREANGTSAQLKRARRYAEIALRDHATLAHLPSEIASAAVYLTR 471
            ISPSMRSTLFGWVTSAHYELILSPATLHLTFSIIDRYCALEFVDAQELRLLGAASLMMAAKYEETMTHPVRTYLRVCGMVYQRHELLGMEQRVLERLQYRLTVPTTYTFIAYAIREANGTSAQLKRARRYAEIALRDHATLAHLPSEIASAAVYLTR
Sbjct:    1 ISPSMRSTLFGWVTSAHYELILSPATLHLTFSIIDRYCALEFVDAQELRLLGAASLMMAAKYEETMTHPVRTYLRVCGMVYQRHELLGMEQRVLERLQYRLTVPTTYTFIAYAIREANGTSAQLKRARRYAEIALRDHATLAHLPSEIASAAVYLTR 157          
BLAST of jgi.p|Trimin1|150613 vs. uniprot
Match: A0A836CN34_9STRA (Cyclin-like protein n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A836CN34_9STRA)

HSP 1 Score: 213 bits (542), Expect = 2.060e-67
Identity = 104/157 (66.24%), Postives = 129/157 (82.17%), Query Frame = 1
Query:    1 ISPSMRSTLFGWVTSAHYELILSPATLHLTFSIIDRYCALEFVDAQELRLLGAASLMMAAKYEETMTHPVRTYLRVCGMVYQRHELLGMEQRVLERLQYRLTVPTTYTFIAYAIREANGTSAQLKRARRYAEIALRDHATLAHLPSEIASAAVYLTR 471
            ISPS R  LF W+ +A   L+L P+TLH+ FSI DR+CA++ VD  ELRL GAA+LM+A KYEET+ H VRTY+ +C M Y + EL+ ME+R+LERL+YRLTVPTTYTF+AYA+R+ +GT AQLKRARRYAE ALRDH TLAHLPSEIA+AA+YL+R
Sbjct:   10 ISPSRRCGLFDWIMAARKRLMLEPSTLHMAFSIADRFCAVDRVDDTELRLFGAAALMIACKYEETVVHSVRTYVYICDMSYHKLELIDMERRILERLEYRLTVPTTYTFMAYAMRDTSGTPAQLKRARRYAESALRDHRTLAHLPSEIAAAAIYLSR 166          
BLAST of jgi.p|Trimin1|150613 vs. uniprot
Match: D7G632_ECTSI (Cyclin B1 n=2 Tax=Ectocarpus TaxID=2879 RepID=D7G632_ECTSI)

HSP 1 Score: 118 bits (296), Expect = 2.220e-28
Identity = 63/157 (40.13%), Postives = 94/157 (59.87%), Query Frame = 1
Query:    1 ISPSMRSTLFGWVTSAHYELILSPATLHLTFSIIDRYCALEFVDAQELRLLGAASLMMAAKYEETMTHPVRTYLRVCGMVYQRHELLGMEQRVLERLQYRLTVPTTYTFIAYAIREANGTSAQLKRARRYAEIALRDHATLAHLPSEIASAAVYLTR 471
            I+  MR+ L  W+   H +  L+  TL+LT  IIDR+C  E V   +L+L+G  +L++A KYEE     VR  + +    Y R E+L MEQ +L RL++ LTVPT +TF+   ++ A  T  Q  RA+ Y E  L++H  L+  PS +A+A+V+L R
Sbjct:  254 INCKMRAILIDWIVEVHLKFKLADPTLYLTCHIIDRFCMQENVHRSKLQLVGVTALLIACKYEEIFPTEVRDCVYITDHAYTREEVLEMEQTILRRLKFELTVPTQWTFLVRFLKIAKATDRQHHRAQYYLERCLQEHEALSFRPSMLAAASVFLAR 410          
BLAST of jgi.p|Trimin1|150613 vs. uniprot
Match: UPI001C4CBA7D (G2/mitotic-specific cyclin S13-7-like n=1 Tax=Zingiber officinale TaxID=94328 RepID=UPI001C4CBA7D)

HSP 1 Score: 116 bits (290), Expect = 1.130e-27
Identity = 58/157 (36.94%), Postives = 96/157 (61.15%), Query Frame = 1
Query:    1 ISPSMRSTLFGWVTSAHYELILSPATLHLTFSIIDRYCALEFVDAQELRLLGAASLMMAAKYEETMTHPVRTYLRVCGMVYQRHELLGMEQRVLERLQYRLTVPTTYTFIAYAIREANGTSAQLKRARRYAEIALRDHATLAHLPSEIASAAVYLTR 471
            I+  MR+ L  W+   HY+  L P TL+LT  IIDRY + E+   +EL+L+G +++++A+KYEE     V  ++ +    Y R E+L ME+R+L++LQ+ LTVPT Y F+   ++ A   +        +AE+AL  ++ + + PS +A+A+VY  R
Sbjct:  219 INAKMRTVLVDWLIEVHYKFELMPETLYLTLYIIDRYLSTEWTLRRELQLVGVSAMLIASKYEEIWAPEVHDFICISDRAYTREEILRMEKRILDKLQWNLTVPTPYVFLVRFVKAAECDTEMKHLVFFFAELALMQYSLVTNCPSMVAAASVYAAR 375          
BLAST of jgi.p|Trimin1|150613 vs. uniprot
Match: A0A0A7LWN4_ALBBR (G2/mitotic-specific cyclin S13-7-like isoform X1 n=1 Tax=Albuca bracteata TaxID=82047 RepID=A0A0A7LWN4_ALBBR)

HSP 1 Score: 114 bits (284), Expect = 6.170e-27
Identity = 59/157 (37.58%), Postives = 95/157 (60.51%), Query Frame = 1
Query:    1 ISPSMRSTLFGWVTSAHYELILSPATLHLTFSIIDRYCALEFVDAQELRLLGAASLMMAAKYEETMTHPVRTYLRVCGMVYQRHELLGMEQRVLERLQYRLTVPTTYTFIAYAIREANGTSAQLKRARRYAEIALRDHATLAHLPSEIASAAVYLTR 471
            I+  MR+ L  W+   H++  L P TL+LTF IIDRY ++E V  +EL+L+G +S+++A+KYEE     V  ++ +    Y + ++LGME+ +L +L++ LTVPT Y F+A  I+ A            +AE+ L  ++ + H PS  A++AVY  R
Sbjct:  203 INEKMRAILGDWLIEVHHKFELMPETLYLTFHIIDRYLSMEQVLRRELQLVGVSSMLIASKYEEIWAPQVEDFMCISDRAYSQGQILGMEKSILNKLEWSLTVPTPYVFLARFIKAAMCDKEMEHMVFFFAELGLLQYSMVTHCPSMFAASAVYAAR 359          
BLAST of jgi.p|Trimin1|150613 vs. uniprot
Match: A0A061SM34_9CHLO (Cyclin B n=1 Tax=Tetraselmis sp. GSL018 TaxID=582737 RepID=A0A061SM34_9CHLO)

HSP 1 Score: 112 bits (281), Expect = 1.220e-26
Identity = 59/157 (37.58%), Postives = 97/157 (61.78%), Query Frame = 1
Query:    1 ISPSMRSTLFGWVTSAHYELILSPATLHLTFSIIDRYCALEFVDAQELRLLGAASLMMAAKYEETMTHPVRTYLRVCGMVYQRHELLGMEQRVLERLQYRLTVPTTYTFIAYAIREANGTSAQLKRARRY-AEIALRDHATLAHLPSEIASAAVYLT 468
            I+P MRS L  W+   H +  L P TLHL+ +IIDRY +   V  +EL+LLG A++ +A+KYEE     VR ++++C   Y R ++L ME+R +E +++++TVPTT+ F+    + A     +      Y AE+AL D+  L +  S++A+A V+++
Sbjct:  175 ITPWMRSVLVDWLVEVHLKFKLMPETLHLSVNIIDRYLSARGVRRRELQLLGVAAMFLASKYEEIYPPEVRDFVQICDRAYSRQQILLMERRAVELIEFKITVPTTFHFLVRFAKAAGQEGREFLMLCSYLAELALVDYRMLEYPYSKVAAACVHIS 331          
BLAST of jgi.p|Trimin1|150613 vs. uniprot
Match: L1JKC2_GUITC (Cyclin N-terminal domain-containing protein n=1 Tax=Guillardia theta (strain CCMP2712) TaxID=905079 RepID=L1JKC2_GUITC)

HSP 1 Score: 110 bits (274), Expect = 3.270e-26
Identity = 60/156 (38.46%), Postives = 92/156 (58.97%), Query Frame = 1
Query:    1 ISPSMRSTLFGWVTSAHYELILSPATLHLTFSIIDRYCALEFVDAQELRLLGAASLMMAAKYEETMTHPVRTYLRVCGMVYQRHELLGMEQRVLERLQYRLTVPTTYTFIAYAIREANGTSAQLKRARRYAEIALRDHATLAHLPSEIASAAVYLT 468
            I+  MR+ L  W+   H +  L   TL LT +I+DR+ A++ V+ Q L+L+G  SLM+AAKYEE     VR Y+ +C   Y R +++ MEQ +L +L +RLTVPT  +F+    + A G S  L       E++L D++ L + PS + +AA  L+
Sbjct:   94 INEKMRAILIDWLVEVHLKFKLRHETLFLTVNILDRFLAVQKVNRQRLQLVGVVSLMIAAKYEEIYPPEVRDYVYICDNAYSREQIIQMEQTILAKLNFRLTVPTPRSFLKRFCKAAQGDSRLLLLISYLLELSLVDYSFLKYKPSLLCAAATSLS 249          
BLAST of jgi.p|Trimin1|150613 vs. uniprot
Match: A0A2T7DFH4_9POAL (Uncharacterized protein n=1 Tax=Panicum hallii var. hallii TaxID=1504633 RepID=A0A2T7DFH4_9POAL)

HSP 1 Score: 107 bits (268), Expect = 4.210e-26
Identity = 55/157 (35.03%), Postives = 93/157 (59.24%), Query Frame = 1
Query:   13 MRSTLFGWVTSAHYELILSPATLHLTFSIIDRYCALEFVDAQELRLLGAASLMMAAKYEETMTHPVRTYLRVCGMVYQRHELLGMEQRVLERLQYRLTVPTTYTFIAYAIREANGTSAQLKRARR----YAEIALRDHATLAHLPSEIASAAVYLTR 471
            MR+ L  W+   H++  L P TL+L   I+D+Y +L+ V  +EL+L+G +++++A KYEE     V  ++ +    Y R ++L ME+ +L RL++ LTVPT+Y F+   I+ A+      K        +AE++L  +  + HLPS +A++AVY  R
Sbjct:    1 MRAILADWIIEVHHKFELMPETLYLAMYIVDQYLSLQPVLRRELQLVGVSAMLIACKYEEIWAPEVNDFILISDSAYSREQILSMEKGILNRLEWNLTVPTSYMFLVRFIKAASSGIKTDKEMENMVFFFAELSLMQYGLVTHLPSMVAASAVYAAR 157          
BLAST of jgi.p|Trimin1|150613 vs. uniprot
Match: A0A4V4H9M8_MUSBA (Cyclin N-terminal domain-containing protein n=4 Tax=Musa TaxID=4640 RepID=A0A4V4H9M8_MUSBA)

HSP 1 Score: 112 bits (280), Expect = 4.250e-26
Identity = 54/157 (34.39%), Postives = 97/157 (61.78%), Query Frame = 1
Query:    1 ISPSMRSTLFGWVTSAHYELILSPATLHLTFSIIDRYCALEFVDAQELRLLGAASLMMAAKYEETMTHPVRTYLRVCGMVYQRHELLGMEQRVLERLQYRLTVPTTYTFIAYAIREANGTSAQLKRARRYAEIALRDHATLAHLPSEIASAAVYLTR 471
            I+  MR+ L  W+   H++  L P TL+LT  IIDRY +++ V  +E +L+G +++++A+KYEE     V  ++ +  M Y R ++LGME+ +L +L++ LTVPT+Y F+   ++ A+           ++E+A+  ++ + H PS +A++AVY  R
Sbjct:  268 INAKMRAILADWLIEVHHKFELMPETLYLTLYIIDRYLSMDVVLRREFQLVGVSAMLIASKYEEIWAPQVDDFICISNMAYTREQILGMEKGILNKLEWNLTVPTSYVFLVRFLKAASCDPEMEHMVFFFSELAMMQYSLVTHRPSMVAASAVYAAR 424          
BLAST of jgi.p|Trimin1|150613 vs. uniprot
Match: UPI001C4D3A16 (G2/mitotic-specific cyclin S13-7-like n=2 Tax=Zingiber officinale TaxID=94328 RepID=UPI001C4D3A16)

HSP 1 Score: 111 bits (278), Expect = 6.560e-26
Identity = 59/155 (38.06%), Postives = 98/155 (63.23%), Query Frame = 1
Query:    1 ISPSMRSTLFGWVTSAHYELILSPATLHLTFSIIDRYCALEFVDA-QELRLLGAASLMMAAKYEETMTHPVRTYLRVCGMVYQRHELLGMEQRVLERLQYRLTVPTTYTFIAYAIREANGTSAQLKRARRYAEIALRDHATLAHLPSEIASAAVY 462
            I+  MR+ L  W+   +++L L+P TL+LTF+IIDRY ++EF    +E +L+G +++++A+KYEE     V  +L +    Y R ++LGME+R+L +L++ LTVPT Y F+   I+ A            +AE+AL +++ +   PS +AS+AVY
Sbjct:  239 INAKMRTILADWLIEVNHKLQLAPETLYLTFNIIDRYLSMEFQTLFKEFQLVGVSAMLIASKYEEIWAPEVNDFLWMADRSYSREQVLGMEKRILNKLEWNLTVPTPYVFLVRFIKAAACDKEMEHMVFFFAELALMNYSMIMFCPSLVASSAVY 393          
The following BLAST results are available for this feature:
BLAST of jgi.p|Trimin1|150613 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
A0A836CJD1_9STRA1.300e-105100.00Cyclin-like protein (Fragment) n=2 Tax=Tribonema m... [more]
A0A836CN34_9STRA2.060e-6766.24Cyclin-like protein n=1 Tax=Tribonema minus TaxID=... [more]
D7G632_ECTSI2.220e-2840.13Cyclin B1 n=2 Tax=Ectocarpus TaxID=2879 RepID=D7G6... [more]
UPI001C4CBA7D1.130e-2736.94G2/mitotic-specific cyclin S13-7-like n=1 Tax=Zing... [more]
A0A0A7LWN4_ALBBR6.170e-2737.58G2/mitotic-specific cyclin S13-7-like isoform X1 n... [more]
A0A061SM34_9CHLO1.220e-2637.58Cyclin B n=1 Tax=Tetraselmis sp. GSL018 TaxID=5827... [more]
L1JKC2_GUITC3.270e-2638.46Cyclin N-terminal domain-containing protein n=1 Ta... [more]
A0A2T7DFH4_9POAL4.210e-2635.03Uncharacterized protein n=1 Tax=Panicum hallii var... [more]
A0A4V4H9M8_MUSBA4.250e-2634.39Cyclin N-terminal domain-containing protein n=4 Ta... [more]
UPI001C4D3A166.560e-2638.06G2/mitotic-specific cyclin S13-7-like n=2 Tax=Zing... [more]

Pages

back to top
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
Contig_18contigContig_18:1064525..1064995 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Tribonema minus UTEX_B_31562021-06-17
Properties
Property NameValue
ProteomeIdTrimin1|150613|gw1.18.277.1
BRITEko00000,ko03032,ko03036
KEGG koko:K21777
GOsGO:0001558,GO:0005575,GO:0005622,GO:0005623,GO:0005737,GO:0008150,GO:0009314,GO:0009628,GO:0010212,GO:0010332,GO:0040008,GO:0044424,GO:0044464,GO:0050789,GO:0050794,GO:0050896,GO:0051128,GO:0065007
DescriptionBelongs to the cyclin family
COG categoryD
Max annot lvl35493|Streptophyta
EggNOG OGsCOG5024@1|root,KOG0653@2759|Eukaryota,37K6W@33090|Viridiplantae,3G7ME@35493|Streptophyta,3KPGE@4447|Liliopsida,3I5NC@38820|Poales
Evalue6.53e-31
Seed ortholog4537.OPUNC05G18980.1
Hectar predicted targeting categoryother localisation
TranscriptId150935
TrackFilteredModels1
ProteinId150613
Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesTypePosition
jgi.p|Trimin1|150613gene_1440Tribonema minus UTEX_B_3156 geneContig_18 1064525..1064995 +


The following exon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
exon_1440_1exon_1440_1Tribonema minus UTEX_B_3156 exonContig_18 1064525..1064995 +


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
CDS_1440CDS_1440Tribonema minus UTEX_B_3156 CDSContig_18 1064525..1064995 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
jgi.p|Trimin1|150613Trimin1|150613|gw1.18.277.1Tribonema minus UTEX_B_3156 polypeptideContig_18 1064525..1064995 +


Sequences
The following sequences are available for this feature:

spliced messenger RNA

>mRNA_1440 ID=mRNA_1440|Name=jgi.p|Trimin1|150613|organism=Tribonema minus UTEX_B_3156 |type=mRNA|length=471bp|location=Sequence derived from alignment at Contig_18:1064525..1064995+ (Tribonema minus UTEX_B_3156 )|Notes=Excludes all bases but those of type(s): exon.  
ATATCACCGAGCATGCGCTCAACGCTGTTTGGCTGGGTCACATCAGCACA
TTATGAGCTGATACTTAGTCCTGCTACGCTGCACCTGACTTTCAGCATCA
TCGACCGCTATTGCGCCCTGGAGTTTGTCGATGCACAAGAGCTTAGATTG
TTGGGCGCAGCATCGCTGATGATGGCGGCCAAGTACGAGGAAACAATGAC
CCATCCAGTCCGAACATACCTGAGAGTGTGTGGCATGGTGTATCAGAGGC
ATGAGCTGCTTGGGATGGAGCAACGTGTGCTTGAGCGGCTCCAGTACCGC
CTCACAGTGCCGACTACATACACATTTATCGCATATGCCATCAGGGAGGC
CAACGGCACATCTGCTCAGCTGAAGAGAGCCAGGCGCTATGCTGAGATTG
CACTGCGAGACCACGCCACACTGGCTCACTTGCCATCTGAGATTGCATCA
GCTGCAGTGTACCTCACCAGG
back to top

protein sequence of jgi.p|Trimin1|150613

>Trimin1|150613|gw1.18.277.1 ID=Trimin1|150613|gw1.18.277.1|Name=jgi.p|Trimin1|150613|organism=Tribonema minus UTEX_B_3156 |type=polypeptide|length=157bp
ISPSMRSTLFGWVTSAHYELILSPATLHLTFSIIDRYCALEFVDAQELRL
LGAASLMMAAKYEETMTHPVRTYLRVCGMVYQRHELLGMEQRVLERLQYR
LTVPTTYTFIAYAIREANGTSAQLKRARRYAEIALRDHATLAHLPSEIAS
AAVYLTR
back to top

mRNA from alignment at Contig_18:1064525..1064995+

Legend: exonpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_1440 ID=mRNA_1440|Name=jgi.p|Trimin1|150613|organism=Tribonema minus UTEX_B_3156 |type=mRNA|length=471bp|location=Sequence derived from alignment at Contig_18:1064525..1064995+ (Tribonema minus UTEX_B_3156 )
ATATCACCGAGCATGCGCTCAACGCTGTTTGGCTGGGTCACATCAGCACA TTATGAGCTGATACTTAGTCCTGCTACGCTGCACCTGACTTTCAGCATCA TCGACCGCTATTGCGCCCTGGAGTTTGTCGATGCACAAGAGCTTAGATTG TTGGGCGCAGCATCGCTGATGATGGCGGCCAAGTACGAGGAAACAATGAC CCATCCAGTCCGAACATACCTGAGAGTGTGTGGCATGGTGTATCAGAGGC ATGAGCTGCTTGGGATGGAGCAACGTGTGCTTGAGCGGCTCCAGTACCGC CTCACAGTGCCGACTACATACACATTTATCGCATATGCCATCAGGGAGGC CAACGGCACATCTGCTCAGCTGAAGAGAGCCAGGCGCTATGCTGAGATTG CACTGCGAGACCACGCCACACTGGCTCACTTGCCATCTGAGATTGCATCA GCTGCAGTGTACCTCACCAGG
back to top

Coding sequence (CDS) from alignment at Contig_18:1064525..1064995+

>mRNA_1440 ID=mRNA_1440|Name=jgi.p|Trimin1|150613|organism=Tribonema minus UTEX_B_3156 |type=CDS|length=471bp|location=Sequence derived from alignment at Contig_18:1064525..1064995+ (Tribonema minus UTEX_B_3156 )
ATATCACCGAGCATGCGCTCAACGCTGTTTGGCTGGGTCACATCAGCACA
TTATGAGCTGATACTTAGTCCTGCTACGCTGCACCTGACTTTCAGCATCA
TCGACCGCTATTGCGCCCTGGAGTTTGTCGATGCACAAGAGCTTAGATTG
TTGGGCGCAGCATCGCTGATGATGGCGGCCAAGTACGAGGAAACAATGAC
CCATCCAGTCCGAACATACCTGAGAGTGTGTGGCATGGTGTATCAGAGGC
ATGAGCTGCTTGGGATGGAGCAACGTGTGCTTGAGCGGCTCCAGTACCGC
CTCACAGTGCCGACTACATACACATTTATCGCATATGCCATCAGGGAGGC
CAACGGCACATCTGCTCAGCTGAAGAGAGCCAGGCGCTATGCTGAGATTG
CACTGCGAGACCACGCCACACTGGCTCACTTGCCATCTGAGATTGCATCA
GCTGCAGTGTACCTCACCAGG
back to top