mRNA_1440 (mRNA) Tribonema minus UTEX_B_3156
Overview
Homology
BLAST of jgi.p|Trimin1|150613 vs. uniprot
Match: A0A836CJD1_9STRA (Cyclin-like protein (Fragment) n=2 Tax=Tribonema minus TaxID=303371 RepID=A0A836CJD1_9STRA) HSP 1 Score: 307 bits (786), Expect = 1.300e-105 Identity = 157/157 (100.00%), Postives = 157/157 (100.00%), Query Frame = 1 Query: 1 ISPSMRSTLFGWVTSAHYELILSPATLHLTFSIIDRYCALEFVDAQELRLLGAASLMMAAKYEETMTHPVRTYLRVCGMVYQRHELLGMEQRVLERLQYRLTVPTTYTFIAYAIREANGTSAQLKRARRYAEIALRDHATLAHLPSEIASAAVYLTR 471 ISPSMRSTLFGWVTSAHYELILSPATLHLTFSIIDRYCALEFVDAQELRLLGAASLMMAAKYEETMTHPVRTYLRVCGMVYQRHELLGMEQRVLERLQYRLTVPTTYTFIAYAIREANGTSAQLKRARRYAEIALRDHATLAHLPSEIASAAVYLTR Sbjct: 1 ISPSMRSTLFGWVTSAHYELILSPATLHLTFSIIDRYCALEFVDAQELRLLGAASLMMAAKYEETMTHPVRTYLRVCGMVYQRHELLGMEQRVLERLQYRLTVPTTYTFIAYAIREANGTSAQLKRARRYAEIALRDHATLAHLPSEIASAAVYLTR 157
BLAST of jgi.p|Trimin1|150613 vs. uniprot
Match: A0A836CN34_9STRA (Cyclin-like protein n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A836CN34_9STRA) HSP 1 Score: 213 bits (542), Expect = 2.060e-67 Identity = 104/157 (66.24%), Postives = 129/157 (82.17%), Query Frame = 1 Query: 1 ISPSMRSTLFGWVTSAHYELILSPATLHLTFSIIDRYCALEFVDAQELRLLGAASLMMAAKYEETMTHPVRTYLRVCGMVYQRHELLGMEQRVLERLQYRLTVPTTYTFIAYAIREANGTSAQLKRARRYAEIALRDHATLAHLPSEIASAAVYLTR 471 ISPS R LF W+ +A L+L P+TLH+ FSI DR+CA++ VD ELRL GAA+LM+A KYEET+ H VRTY+ +C M Y + EL+ ME+R+LERL+YRLTVPTTYTF+AYA+R+ +GT AQLKRARRYAE ALRDH TLAHLPSEIA+AA+YL+R Sbjct: 10 ISPSRRCGLFDWIMAARKRLMLEPSTLHMAFSIADRFCAVDRVDDTELRLFGAAALMIACKYEETVVHSVRTYVYICDMSYHKLELIDMERRILERLEYRLTVPTTYTFMAYAMRDTSGTPAQLKRARRYAESALRDHRTLAHLPSEIAAAAIYLSR 166
BLAST of jgi.p|Trimin1|150613 vs. uniprot
Match: D7G632_ECTSI (Cyclin B1 n=2 Tax=Ectocarpus TaxID=2879 RepID=D7G632_ECTSI) HSP 1 Score: 118 bits (296), Expect = 2.220e-28 Identity = 63/157 (40.13%), Postives = 94/157 (59.87%), Query Frame = 1 Query: 1 ISPSMRSTLFGWVTSAHYELILSPATLHLTFSIIDRYCALEFVDAQELRLLGAASLMMAAKYEETMTHPVRTYLRVCGMVYQRHELLGMEQRVLERLQYRLTVPTTYTFIAYAIREANGTSAQLKRARRYAEIALRDHATLAHLPSEIASAAVYLTR 471 I+ MR+ L W+ H + L+ TL+LT IIDR+C E V +L+L+G +L++A KYEE VR + + Y R E+L MEQ +L RL++ LTVPT +TF+ ++ A T Q RA+ Y E L++H L+ PS +A+A+V+L R Sbjct: 254 INCKMRAILIDWIVEVHLKFKLADPTLYLTCHIIDRFCMQENVHRSKLQLVGVTALLIACKYEEIFPTEVRDCVYITDHAYTREEVLEMEQTILRRLKFELTVPTQWTFLVRFLKIAKATDRQHHRAQYYLERCLQEHEALSFRPSMLAAASVFLAR 410
BLAST of jgi.p|Trimin1|150613 vs. uniprot
Match: UPI001C4CBA7D (G2/mitotic-specific cyclin S13-7-like n=1 Tax=Zingiber officinale TaxID=94328 RepID=UPI001C4CBA7D) HSP 1 Score: 116 bits (290), Expect = 1.130e-27 Identity = 58/157 (36.94%), Postives = 96/157 (61.15%), Query Frame = 1 Query: 1 ISPSMRSTLFGWVTSAHYELILSPATLHLTFSIIDRYCALEFVDAQELRLLGAASLMMAAKYEETMTHPVRTYLRVCGMVYQRHELLGMEQRVLERLQYRLTVPTTYTFIAYAIREANGTSAQLKRARRYAEIALRDHATLAHLPSEIASAAVYLTR 471 I+ MR+ L W+ HY+ L P TL+LT IIDRY + E+ +EL+L+G +++++A+KYEE V ++ + Y R E+L ME+R+L++LQ+ LTVPT Y F+ ++ A + +AE+AL ++ + + PS +A+A+VY R Sbjct: 219 INAKMRTVLVDWLIEVHYKFELMPETLYLTLYIIDRYLSTEWTLRRELQLVGVSAMLIASKYEEIWAPEVHDFICISDRAYTREEILRMEKRILDKLQWNLTVPTPYVFLVRFVKAAECDTEMKHLVFFFAELALMQYSLVTNCPSMVAAASVYAAR 375
BLAST of jgi.p|Trimin1|150613 vs. uniprot
Match: A0A0A7LWN4_ALBBR (G2/mitotic-specific cyclin S13-7-like isoform X1 n=1 Tax=Albuca bracteata TaxID=82047 RepID=A0A0A7LWN4_ALBBR) HSP 1 Score: 114 bits (284), Expect = 6.170e-27 Identity = 59/157 (37.58%), Postives = 95/157 (60.51%), Query Frame = 1 Query: 1 ISPSMRSTLFGWVTSAHYELILSPATLHLTFSIIDRYCALEFVDAQELRLLGAASLMMAAKYEETMTHPVRTYLRVCGMVYQRHELLGMEQRVLERLQYRLTVPTTYTFIAYAIREANGTSAQLKRARRYAEIALRDHATLAHLPSEIASAAVYLTR 471 I+ MR+ L W+ H++ L P TL+LTF IIDRY ++E V +EL+L+G +S+++A+KYEE V ++ + Y + ++LGME+ +L +L++ LTVPT Y F+A I+ A +AE+ L ++ + H PS A++AVY R Sbjct: 203 INEKMRAILGDWLIEVHHKFELMPETLYLTFHIIDRYLSMEQVLRRELQLVGVSSMLIASKYEEIWAPQVEDFMCISDRAYSQGQILGMEKSILNKLEWSLTVPTPYVFLARFIKAAMCDKEMEHMVFFFAELGLLQYSMVTHCPSMFAASAVYAAR 359
BLAST of jgi.p|Trimin1|150613 vs. uniprot
Match: A0A061SM34_9CHLO (Cyclin B n=1 Tax=Tetraselmis sp. GSL018 TaxID=582737 RepID=A0A061SM34_9CHLO) HSP 1 Score: 112 bits (281), Expect = 1.220e-26 Identity = 59/157 (37.58%), Postives = 97/157 (61.78%), Query Frame = 1 Query: 1 ISPSMRSTLFGWVTSAHYELILSPATLHLTFSIIDRYCALEFVDAQELRLLGAASLMMAAKYEETMTHPVRTYLRVCGMVYQRHELLGMEQRVLERLQYRLTVPTTYTFIAYAIREANGTSAQLKRARRY-AEIALRDHATLAHLPSEIASAAVYLT 468 I+P MRS L W+ H + L P TLHL+ +IIDRY + V +EL+LLG A++ +A+KYEE VR ++++C Y R ++L ME+R +E +++++TVPTT+ F+ + A + Y AE+AL D+ L + S++A+A V+++ Sbjct: 175 ITPWMRSVLVDWLVEVHLKFKLMPETLHLSVNIIDRYLSARGVRRRELQLLGVAAMFLASKYEEIYPPEVRDFVQICDRAYSRQQILLMERRAVELIEFKITVPTTFHFLVRFAKAAGQEGREFLMLCSYLAELALVDYRMLEYPYSKVAAACVHIS 331
BLAST of jgi.p|Trimin1|150613 vs. uniprot
Match: L1JKC2_GUITC (Cyclin N-terminal domain-containing protein n=1 Tax=Guillardia theta (strain CCMP2712) TaxID=905079 RepID=L1JKC2_GUITC) HSP 1 Score: 110 bits (274), Expect = 3.270e-26 Identity = 60/156 (38.46%), Postives = 92/156 (58.97%), Query Frame = 1 Query: 1 ISPSMRSTLFGWVTSAHYELILSPATLHLTFSIIDRYCALEFVDAQELRLLGAASLMMAAKYEETMTHPVRTYLRVCGMVYQRHELLGMEQRVLERLQYRLTVPTTYTFIAYAIREANGTSAQLKRARRYAEIALRDHATLAHLPSEIASAAVYLT 468 I+ MR+ L W+ H + L TL LT +I+DR+ A++ V+ Q L+L+G SLM+AAKYEE VR Y+ +C Y R +++ MEQ +L +L +RLTVPT +F+ + A G S L E++L D++ L + PS + +AA L+ Sbjct: 94 INEKMRAILIDWLVEVHLKFKLRHETLFLTVNILDRFLAVQKVNRQRLQLVGVVSLMIAAKYEEIYPPEVRDYVYICDNAYSREQIIQMEQTILAKLNFRLTVPTPRSFLKRFCKAAQGDSRLLLLISYLLELSLVDYSFLKYKPSLLCAAATSLS 249
BLAST of jgi.p|Trimin1|150613 vs. uniprot
Match: A0A2T7DFH4_9POAL (Uncharacterized protein n=1 Tax=Panicum hallii var. hallii TaxID=1504633 RepID=A0A2T7DFH4_9POAL) HSP 1 Score: 107 bits (268), Expect = 4.210e-26 Identity = 55/157 (35.03%), Postives = 93/157 (59.24%), Query Frame = 1 Query: 13 MRSTLFGWVTSAHYELILSPATLHLTFSIIDRYCALEFVDAQELRLLGAASLMMAAKYEETMTHPVRTYLRVCGMVYQRHELLGMEQRVLERLQYRLTVPTTYTFIAYAIREANGTSAQLKRARR----YAEIALRDHATLAHLPSEIASAAVYLTR 471 MR+ L W+ H++ L P TL+L I+D+Y +L+ V +EL+L+G +++++A KYEE V ++ + Y R ++L ME+ +L RL++ LTVPT+Y F+ I+ A+ K +AE++L + + HLPS +A++AVY R Sbjct: 1 MRAILADWIIEVHHKFELMPETLYLAMYIVDQYLSLQPVLRRELQLVGVSAMLIACKYEEIWAPEVNDFILISDSAYSREQILSMEKGILNRLEWNLTVPTSYMFLVRFIKAASSGIKTDKEMENMVFFFAELSLMQYGLVTHLPSMVAASAVYAAR 157
BLAST of jgi.p|Trimin1|150613 vs. uniprot
Match: A0A4V4H9M8_MUSBA (Cyclin N-terminal domain-containing protein n=4 Tax=Musa TaxID=4640 RepID=A0A4V4H9M8_MUSBA) HSP 1 Score: 112 bits (280), Expect = 4.250e-26 Identity = 54/157 (34.39%), Postives = 97/157 (61.78%), Query Frame = 1 Query: 1 ISPSMRSTLFGWVTSAHYELILSPATLHLTFSIIDRYCALEFVDAQELRLLGAASLMMAAKYEETMTHPVRTYLRVCGMVYQRHELLGMEQRVLERLQYRLTVPTTYTFIAYAIREANGTSAQLKRARRYAEIALRDHATLAHLPSEIASAAVYLTR 471 I+ MR+ L W+ H++ L P TL+LT IIDRY +++ V +E +L+G +++++A+KYEE V ++ + M Y R ++LGME+ +L +L++ LTVPT+Y F+ ++ A+ ++E+A+ ++ + H PS +A++AVY R Sbjct: 268 INAKMRAILADWLIEVHHKFELMPETLYLTLYIIDRYLSMDVVLRREFQLVGVSAMLIASKYEEIWAPQVDDFICISNMAYTREQILGMEKGILNKLEWNLTVPTSYVFLVRFLKAASCDPEMEHMVFFFSELAMMQYSLVTHRPSMVAASAVYAAR 424
BLAST of jgi.p|Trimin1|150613 vs. uniprot
Match: UPI001C4D3A16 (G2/mitotic-specific cyclin S13-7-like n=2 Tax=Zingiber officinale TaxID=94328 RepID=UPI001C4D3A16) HSP 1 Score: 111 bits (278), Expect = 6.560e-26 Identity = 59/155 (38.06%), Postives = 98/155 (63.23%), Query Frame = 1 Query: 1 ISPSMRSTLFGWVTSAHYELILSPATLHLTFSIIDRYCALEFVDA-QELRLLGAASLMMAAKYEETMTHPVRTYLRVCGMVYQRHELLGMEQRVLERLQYRLTVPTTYTFIAYAIREANGTSAQLKRARRYAEIALRDHATLAHLPSEIASAAVY 462 I+ MR+ L W+ +++L L+P TL+LTF+IIDRY ++EF +E +L+G +++++A+KYEE V +L + Y R ++LGME+R+L +L++ LTVPT Y F+ I+ A +AE+AL +++ + PS +AS+AVY Sbjct: 239 INAKMRTILADWLIEVNHKLQLAPETLYLTFNIIDRYLSMEFQTLFKEFQLVGVSAMLIASKYEEIWAPEVNDFLWMADRSYSREQVLGMEKRILNKLEWNLTVPTPYVFLVRFIKAAACDKEMEHMVFFFAELALMNYSMIMFCPSLVASSAVY 393 The following BLAST results are available for this feature:
BLAST of jgi.p|Trimin1|150613 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90) Total hits: 25
Pagesback to topAlignments
The following features are aligned
Analyses
This mRNA is derived from or has results from the following analyses
Properties
Relationships
This mRNA is a part of the following gene feature(s):
The following exon feature(s) are a part of this mRNA:
The following CDS feature(s) are a part of this mRNA:
The following polypeptide feature(s) derives from this mRNA:
Sequences
The following sequences are available for this feature:
spliced messenger RNA >mRNA_1440 ID=mRNA_1440|Name=jgi.p|Trimin1|150613|organism=Tribonema minus UTEX_B_3156 |type=mRNA|length=471bp|location=Sequence derived from alignment at Contig_18:1064525..1064995+ (Tribonema minus UTEX_B_3156 )|Notes=Excludes all bases but those of type(s): exon. ATATCACCGAGCATGCGCTCAACGCTGTTTGGCTGGGTCACATCAGCACAback to top protein sequence of jgi.p|Trimin1|150613 >Trimin1|150613|gw1.18.277.1 ID=Trimin1|150613|gw1.18.277.1|Name=jgi.p|Trimin1|150613|organism=Tribonema minus UTEX_B_3156 |type=polypeptide|length=157bp ISPSMRSTLFGWVTSAHYELILSPATLHLTFSIIDRYCALEFVDAQELRLback to top mRNA from alignment at Contig_18:1064525..1064995+ Legend: exonpolypeptideCDS Hold the cursor over a type above to highlight its positions in the sequence below.>mRNA_1440 ID=mRNA_1440|Name=jgi.p|Trimin1|150613|organism=Tribonema minus UTEX_B_3156 |type=mRNA|length=471bp|location=Sequence derived from alignment at Contig_18:1064525..1064995+ (Tribonema minus UTEX_B_3156 )back to top Coding sequence (CDS) from alignment at Contig_18:1064525..1064995+ >mRNA_1440 ID=mRNA_1440|Name=jgi.p|Trimin1|150613|organism=Tribonema minus UTEX_B_3156 |type=CDS|length=471bp|location=Sequence derived from alignment at Contig_18:1064525..1064995+ (Tribonema minus UTEX_B_3156 )back to top |