mRNA_1437 (mRNA) Tribonema minus UTEX_B_3156

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview


Name	jgi.p\|Trimin1\|161786
Unique Name	mRNA_1437
Type	mRNA
Organism	Tribonema minus UTEX_B_3156 (Tribonema minus UTEX_B_3156 )

Homology

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BLAST of jgi.p|Trimin1|161786 vs. uniprot
Match: A0A835Z9M8_9STRA (Ankyrin repeat-containing domain protein n=2 Tax=Tribonema minus TaxID=303371 RepID=A0A835Z9M8_9STRA)

HSP 1 Score: 374 bits (959), Expect = 8.940e-123
Identity = 450/450 (100.00%), Postives = 450/450 (100.00%), Query Frame = 1

Query:    1 MAYNAGHPVDERVCHALARSGALEQLKFVKANVSDLLWSHKLTDVAAEHGHLATLQWLHETGVPLRTSASHXXXXXXXXXXXXXLVAKRVYDSEIYIHAAAGGNVKILAWLRDHPDKRLWRLRLSSTAITKAAEKGHRDAVRWLIEHRFKTSDDSXXXXXXXXXXXXXXXXXXXXXXPTDWLTCEAXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXAIAVNATDFMRLMRLSEGVVFISDKMIEAARNTCRPSTIPFLEEWKRRWSHLLPPPDVALAPEEETASLDQLQMN 1350
            MAYNAGHPVDERVCHALARSGALEQLKFVKANVSDLLWSHKLTDVAAEHGHLATLQWLHETGVPLRTSASHXXXXXXXXXXXXXLVAKRVYDSEIYIHAAAGGNVKILAWLRDHPDKRLWRLRLSSTAITKAAEKGHRDAVRWLIEHRFKTSDDSXXXXXXXXXXXXXXXXXXXXXXPTDWLTCEAXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXAIAVNATDFMRLMRLSEGVVFISDKMIEAARNTCRPSTIPFLEEWKRRWSHLLPPPDVALAPEEETASLDQLQMN
Sbjct:    1 MAYNAGHPVDERVCHALARSGALEQLKFVKANVSDLLWSHKLTDVAAEHGHLATLQWLHETGVPLRTSASHXXXXXXXXXXXXXLVAKRVYDSEIYIHAAAGGNVKILAWLRDHPDKRLWRLRLSSTAITKAAEKGHRDAVRWLIEHRFKTSDDSXXXXXXXXXXXXXXXXXXXXXXPTDWLTCEAXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXAIAVNATDFMRLMRLSEGVVFISDKMIEAARNTCRPSTIPFLEEWKRRWSHLLPPPDVALAPEEETASLDQLQMN 450

The following BLAST results are available for this feature:

BLAST of jgi.p|Trimin1|161786 vs. uniprot

BLAST of jgi.p|Trimin1|161786 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 1


Match Name	E-value	Identity	Description
A0A835Z9M8_9STRA	8.940e-123	100.00	Ankyrin repeat-containing domain protein n=2 Tax=T...	[more]

Alignments

The following features are aligned


Aligned Feature	Feature Type	Alignment Location
Contig_18	contig	Contig_18:1053545..1055038 -

Analyses

This mRNA is derived from or has results from the following analyses


Analysis Name	Date Performed
Diamond blastx: OGS1.0 vs UniRef90	2022-09-19
OGS1.0 of Tribonema minus UTEX_B_3156	2021-06-17

Properties


Property Name	Value
ProteomeId	Trimin1\|161786\|e_gw1.18.86.1
Description	Ankyrin repeats (3 copies)
COG category	S
Max annot lvl	4776\|Peronosporales
EggNOG OGs	COG0666@1\|root,KOG0504@2759\|Eukaryota,3QESJ@4776\|Peronosporales
Evalue	0.000574
Seed ortholog	164328.Phyra74268
Hectar predicted targeting category	other localisation
TranscriptId	162108
Track	FilteredModels1
ProteinId	161786

Relationships

This mRNA is a part of the following gene feature(s):


Feature Name	Unique Name	Species	Type	Position
jgi.p\|Trimin1\|161786	gene_1437	Tribonema minus UTEX_B_3156	gene	Contig_18 1053545..1055038 -

The following polypeptide feature(s) derives from this mRNA:


Feature Name	Unique Name	Species	Type	Position
jgi.p\|Trimin1\|161786	Trimin1\|161786\|e_gw1.18.86.1	Tribonema minus UTEX_B_3156	polypeptide	Contig_18 1053545..1055038 -

The following exon feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type	Position
exon_1437_2	exon_1437_2	Tribonema minus UTEX_B_3156	exon	Contig_18 1053545..1054434 -
exon_1437_1	exon_1437_1	Tribonema minus UTEX_B_3156	exon	Contig_18 1054576..1055038 -

The following CDS feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type	Position
CDS_1437	CDS_1437	Tribonema minus UTEX_B_3156	CDS	Contig_18 1054576..1055038 -

Sequences

The following sequences are available for this feature:

mRNA - spliced transcript sequence
protein sequence
mRNA from alignment at Contig_18:1053545..1055038-
coding sequence from alignment at Contig_18:1053545..1055038-

spliced messenger RNA

>mRNA_1437 ID=mRNA_1437|Name=jgi.p|Trimin1|161786|organism=Tribonema minus UTEX_B_3156 |type=mRNA|length=1353bp|location=Sequence derived from alignment at Contig_18:1053545..1055038- (Tribonema minus UTEX_B_3156 )|Notes=Excludes all bases but those of type(s): exon.  
ATGGCGTACAATGCTGGCCACCCTGTCGATGAGCGGGTCTGCCATGCGCT
CGCTAGGAGCGGGGCCCTGGAGCAGTTAAAGTTTGTCAAGGCCAACGTCA
GCGACCTGCTCTGGAGCCATAAGCTTACAGATGTAGCGGCCGAGCACGGG
CACCTCGCAACCCTACAATGGTTGCACGAGACAGGCGTGCCGCTGAGGAC
TAGCGCGAGTCACGTTGCTGCTGAAAGCGGCCACGTGCATGTTCTCACCT
GGCTAGTTGCCAAAAGGGTATACGACAGTGAAATCTACATTCACGCTGCA
GCTGGCGGGAACGTCAAGATCCTCGCGTGGCTGCGTGACCATCCAGACAA
GAGGCTGTGGAGGTTACGGCTCAGCTCTACTGCTATCACCAAGGCAGCGG
AGAAGGGGCATCGGGATGCCGTGAGGTGGCTTATTGAGCACCGCTTCAAA
ACCAGTGACGACAGCGCAGTCACCGCAGCTGCGGAGGCTGGCAACGCTGA
TCTCGTCAGGTGGCTGGTCGAACGCAGCTTTCCCACAGACTGGCTGACCT
GCGAGGCAGCTGCGAGGAATGGCGACCTCGACCTCATTCAGTGGCTAAGA
GAGCATGGAGCGGAACTGGACGAAGGAGTCTGCACGGGTGCGGCTTCAGG
AGGACACCTCCATGTTCTCAAGTTTGCCAGGGAGAACGGATGCAGCTGGC
GCGGCAGTGCTTGCGAAGGAGCAGCGGCAGGGGGGCACCTGCAGGTCTTA
CAGTGGATCCATGCAAATGGAGGGCCATGGGACGCGCGGACGTTTACTGC
AGCGGCACAGCGCGGTGATGTAGGGATGATGCAGTATCTGTTGCAGCAGG
ACTGCAAATGGTCCGTCAAGACCTGTGCAGCAGCGGCCGGAGGAGGGCAT
TTGCATGCGCTGCAGTGGCTGCGGGAGCGGGGGTGTCCGTGGGATGCGCG
CACCGTCACGGCCGCTGCTGCGAGTGGTCACCTAGAGATCATCAGGTGGG
CCCGCAACACGGGGTGTAGGTGGGGCACAGCATCCATTTCGGCGGCTACA
AGAAACAAACATGAGCAAGTCGCGACGTGGATGCTGCAAAACGGGTGCAC
TTTCGATGAAGCCACAGTCAGCGCAGCTATAGCAGTCAATGCTACAGATT
TCATGCGTCTGATGCGGTTGTCTGAGGGGGTAGTGTTCATATCAGATAAG
ATGATTGAGGCAGCAAGGAACACCTGCCGGCCGAGCACAATTCCATTTCT
GGAGGAATGGAAGAGAAGATGGTCGCACCTGCTGCCGCCCCCAGATGTGG
CACTGGCACCTGAGGAAGAGACCGCTAGCCTAGACCAGCTTCAAATGAAT
TGA

protein sequence of jgi.p|Trimin1|161786

>Trimin1|161786|e_gw1.18.86.1 ID=Trimin1|161786|e_gw1.18.86.1|Name=jgi.p|Trimin1|161786|organism=Tribonema minus UTEX_B_3156 |type=polypeptide|length=451bp
MAYNAGHPVDERVCHALARSGALEQLKFVKANVSDLLWSHKLTDVAAEHG
HLATLQWLHETGVPLRTSASHVAAESGHVHVLTWLVAKRVYDSEIYIHAA
AGGNVKILAWLRDHPDKRLWRLRLSSTAITKAAEKGHRDAVRWLIEHRFK
TSDDSAVTAAAEAGNADLVRWLVERSFPTDWLTCEAAARNGDLDLIQWLR
EHGAELDEGVCTGAASGGHLHVLKFARENGCSWRGSACEGAAAGGHLQVL
QWIHANGGPWDARTFTAAAQRGDVGMMQYLLQQDCKWSVKTCAAAAGGGH
LHALQWLRERGCPWDARTVTAAAASGHLEIIRWARNTGCRWGTASISAAT
RNKHEQVATWMLQNGCTFDEATVSAAIAVNATDFMRLMRLSEGVVFISDK
MIEAARNTCRPSTIPFLEEWKRRWSHLLPPPDVALAPEEETASLDQLQMN
*

mRNA from alignment at Contig_18:1053545..1055038-

Legend: polypeptideexonCDS

Hold the cursor over a type above to highlight its positions in the sequence below.

>mRNA_1437 ID=mRNA_1437|Name=jgi.p|Trimin1|161786|organism=Tribonema minus UTEX_B_3156 |type=mRNA|length=1494bp|location=Sequence derived from alignment at Contig_18:1053545..1055038- (Tribonema minus UTEX_B_3156 )
ATGGCGTACAATGCTGGCCACCCTGTCGATGAGCGGGTCTGCCATGCGCT
CGCTAGGAGCGGGGCCCTGGAGCAGTTAAAGTTTGTCAAGGCCAACGTCA
GCGACCTGCTCTGGAGCCATAAGCTTACAGATGTAGCGGCCGAGCACGGG
CACCTCGCAACCCTACAATGGTTGCACGAGACAGGCGTGCCGCTGAGGAC
TAGCGCGAGTCACGTTGCTGCTGAAAGCGGCCACGTGCATGTTCTCACCT
GGCTAGTTGCCAAAAGGGTATACGACAGTGAAATCTACATTCACGCTGCA
GCTGGCGGGAACGTCAAGATCCTCGCGTGGCTGCGTGACCATCCAGACAA
GAGGCTGTGGAGGTTACGGCTCAGCTCTACTGCTATCACCAAGGCAGCGG
AGAAGGGGCATCGGGATGCCGTGAGGTGGCTTATTGAGCACCGCTTCAAA
ACCAGTGACGACAGTATAGTGGTCGCTGCTCGAGCAGGGTCCAAAGAGTG
TGTCGAGCTCATATACGTGCACAGAGCTGCTGACTTGCAACAGCGTTGGC
TGCGTGCTAGCCACCCGGAGGGAGCAATCGAGCCATTGTTCGGCCCCTGC
GAAGGCGCAGTCACCGCAGCTGCGGAGGCTGGCAACGCTGATCTCGTCAG
GTGGCTGGTCGAACGCAGCTTTCCCACAGACTGGCTGACCTGCGAGGCAG
CTGCGAGGAATGGCGACCTCGACCTCATTCAGTGGCTAAGAGAGCATGGA
GCGGAACTGGACGAAGGAGTCTGCACGGGTGCGGCTTCAGGAGGACACCT
CCATGTTCTCAAGTTTGCCAGGGAGAACGGATGCAGCTGGCGCGGCAGTG
CTTGCGAAGGAGCAGCGGCAGGGGGGCACCTGCAGGTCTTACAGTGGATC
CATGCAAATGGAGGGCCATGGGACGCGCGGACGTTTACTGCAGCGGCACA
GCGCGGTGATGTAGGGATGATGCAGTATCTGTTGCAGCAGGACTGCAAAT
GGTCCGTCAAGACCTGTGCAGCAGCGGCCGGAGGAGGGCATTTGCATGCG
CTGCAGTGGCTGCGGGAGCGGGGGTGTCCGTGGGATGCGCGCACCGTCAC
GGCCGCTGCTGCGAGTGGTCACCTAGAGATCATCAGGTGGGCCCGCAACA
CGGGGTGTAGGTGGGGCACAGCATCCATTTCGGCGGCTACAAGAAACAAA
CATGAGCAAGTCGCGACGTGGATGCTGCAAAACGGGTGCACTTTCGATGA
AGCCACAGTCAGCGCAGCTATAGCAGTCAATGCTACAGATTTCATGCGTC
TGATGCGGTTGTCTGAGGGGGTAGTGTTCATATCAGATAAGATGATTGAG
GCAGCAAGGAACACCTGCCGGCCGAGCACAATTCCATTTCTGGAGGAATG
GAAGAGAAGATGGTCGCACCTGCTGCCGCCCCCAGATGTGGCACTGGCAC
CTGAGGAAGAGACCGCTAGCCTAGACCAGCTTCAAATGAATTGA

Coding sequence (CDS) from alignment at Contig_18:1053545..1055038-

>mRNA_1437 ID=mRNA_1437|Name=jgi.p|Trimin1|161786|organism=Tribonema minus UTEX_B_3156 |type=CDS|length=1353bp|location=Sequence derived from alignment at Contig_18:1053545..1055038- (Tribonema minus UTEX_B_3156 )
ATGGCGTACAATGCTGGCCACCCTGTCGATGAGCGGGTCTGCCATGCGCT
CGCTAGGAGCGGGGCCCTGGAGCAGTTAAAGTTTGTCAAGGCCAACGTCA
GCGACCTGCTCTGGAGCCATAAGCTTACAGATGTAGCGGCCGAGCACGGG
CACCTCGCAACCCTACAATGGTTGCACGAGACAGGCGTGCCGCTGAGGAC
TAGCGCGAGTCACGTTGCTGCTGAAAGCGGCCACGTGCATGTTCTCACCT
GGCTAGTTGCCAAAAGGGTATACGACAGTGAAATCTACATTCACGCTGCA
GCTGGCGGGAACGTCAAGATCCTCGCGTGGCTGCGTGACCATCCAGACAA
GAGGCTGTGGAGGTTACGGCTCAGCTCTACTGCTATCACCAAGGCAGCGG
AGAAGGGGCATCGGGATGCCGTGAGGTGGCTTATTGAGCACCGCTTCAAA
ACCAGTGACGACAGCGCAGTCACCGCAGCTGCGGAGGCTGGCAACGCTGA
TCTCGTCAGGTGGCTGGTCGAACGCAGCTTTCCCACAGACTGGCTGACCT
GCGAGGCAGCTGCGAGGAATGGCGACCTCGACCTCATTCAGTGGCTAAGA
GAGCATGGAGCGGAACTGGACGAAGGAGTCTGCACGGGTGCGGCTTCAGG
AGGACACCTCCATGTTCTCAAGTTTGCCAGGGAGAACGGATGCAGCTGGC
GCGGCAGTGCTTGCGAAGGAGCAGCGGCAGGGGGGCACCTGCAGGTCTTA
CAGTGGATCCATGCAAATGGAGGGCCATGGGACGCGCGGACGTTTACTGC
AGCGGCACAGCGCGGTGATGTAGGGATGATGCAGTATCTGTTGCAGCAGG
ACTGCAAATGGTCCGTCAAGACCTGTGCAGCAGCGGCCGGAGGAGGGCAT
TTGCATGCGCTGCAGTGGCTGCGGGAGCGGGGGTGTCCGTGGGATGCGCG
CACCGTCACGGCCGCTGCTGCGAGTGGTCACCTAGAGATCATCAGGTGGG
CCCGCAACACGGGGTGTAGGTGGGGCACAGCATCCATTTCGGCGGCTACA
AGAAACAAACATGAGCAAGTCGCGACGTGGATGCTGCAAAACGGGTGCAC
TTTCGATGAAGCCACAGTCAGCGCAGCTATAGCAGTCAATGCTACAGATT
TCATGCGTCTGATGCGGTTGTCTGAGGGGGTAGTGTTCATATCAGATAAG
ATGATTGAGGCAGCAAGGAACACCTGCCGGCCGAGCACAATTCCATTTCT
GGAGGAATGGAAGAGAAGATGGTCGCACCTGCTGCCGCCCCCAGATGTGG
CACTGGCACCTGAGGAAGAGACCGCTAGCCTAGACCAGCTTCAAATGAAT
TGA