mRNA_14367 (mRNA) Tribonema minus UTEX_B_3156

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
Namejgi.p|Trimin1|175802
Unique NamemRNA_14367
TypemRNA
OrganismTribonema minus UTEX_B_3156 (Tribonema minus UTEX_B_3156 )
Homology
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BLAST of jgi.p|Trimin1|175802 vs. uniprot
Match: A0A835ZGR8_9STRA (E3 ubiquitin-protein ligase listerin (Fragment) n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A835ZGR8_9STRA)

HSP 1 Score: 330 bits (845), Expect = 1.710e-113
Identity = 191/191 (100.00%), Postives = 191/191 (100.00%), Query Frame = 1 
Query:    1 MQKRRNSSGGSAXXXXXXXXXXXXXXXXXXXXAANGSTFAAAADANAGSVQPAARPLPPFYDGTNSDLAMLFKRLTKKDPTTKLKALSQLQNLCSAAASAAEAPQRGTPPQQEHLHHHQAFLTPDDVIGLVPHWVYIYARLALDNDRRVRESANATLSHVAAANRKAVVPFLRQLLGPWWICMADPASEVA 573
            MQKRRNSSGGSAXXXXXXXXXXXXXXXXXXXXAANGSTFAAAADANAGSVQPAARPLPPFYDGTNSDLAMLFKRLTKKDPTTKLKALSQLQNLCSAAASAAEAPQRGTPPQQEHLHHHQAFLTPDDVIGLVPHWVYIYARLALDNDRRVRESANATLSHVAAANRKAVVPFLRQLLGPWWICMADPASEVA
Sbjct:    1 MQKRRNSSGGSAXXXXXXXXXXXXXXXXXXXXAANGSTFAAAADANAGSVQPAARPLPPFYDGTNSDLAMLFKRLTKKDPTTKLKALSQLQNLCSAAASAAEAPQRGTPPQQEHLHHHQAFLTPDDVIGLVPHWVYIYARLALDNDRRVRESANATLSHVAAANRKAVVPFLRQLLGPWWICMADPASEVA 191
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BLAST of jgi.p|Trimin1|175802 vs. uniprot
Match: D8LU37_ECTSI (E3 ubiquitin-protein ligase listerin n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D8LU37_ECTSI)

HSP 1 Score: 105 bits (261), Expect = 2.770e-24
Identity = 63/158 (39.87%), Postives = 86/158 (54.43%), Query Frame = 1 
Query:  169 LPPFYDGTNSDLAMLFKRLTKKDPTTKLKALSQLQNLCSAAASAAE---APQRG----------------TPPQQEHLHHHQAFLTP----DDVIGLVPHWVYIYARLALDNDRRVRESANATLSHVAAANRKAVVPFLRQLLGPWWICMADPASEVA 573
            LPP Y G++S LA++ KRL+K+D TTKLKAL++L+ +C      AE   +PQ G                 P          A  TP    +D+ GL PHWV++Y RL+ + DRR RE+AN TL  +   NR+A  P +  L+GPW+   AD A E A
Sbjct:  100 LPPHYSGSDSHLAVVSKRLSKRDVTTKLKALAELRAMCRLVTREAELAASPQPGPGQDSRAGTSRASSGVAPASGAGAAESSAMDTPATSAEDLGGLAPHWVFLYQRLSAEGDRRTREAANTTLLCMLKGNRRAFQPLMSSLMGPWFCSQADTAPERA 257
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BLAST of jgi.p|Trimin1|175802 vs. uniprot
Match: I1HVW3_BRADI (E3 ubiquitin-protein ligase listerin n=1 Tax=Brachypodium distachyon TaxID=15368 RepID=I1HVW3_BRADI)

HSP 1 Score: 87.8 bits (216), Expect = 9.950e-17
Identity = 50/135 (37.04%), Postives = 69/135 (51.11%), Query Frame = 1 
Query:  169 LPPFYDGTNSDLAMLFKRLTKKDPTTKLKALSQLQNLCSAAASAAEAPQRGTPPQQEHLHHHQAFLTPDDVIGLVPHWVYIYARLALDNDRRVRESANATLSHVAAANRKAVVPFLRQLLGPWWICMADPASEVA 573
            LPP  DG   ++    +RL +KDPTTKLKALS L  L +                             ++V+ +VP W + Y RL LD +R VR + N T+S +  A +K + P L+ L+GPWW    DPA+EVA
Sbjct:   58 LPPDVDG---EVLQHLRRLGRKDPTTKLKALSTLSMLFAQKPG-------------------------EEVVQIVPQWAFEYKRLLLDYNRDVRRATNDTMSSLVMAVKKGLAPHLKSLMGPWWFSQFDPAAEVA 164
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BLAST of jgi.p|Trimin1|175802 vs. uniprot
Match: A0A835V2X4_VANPL (E3 ubiquitin-protein ligase listerin n=1 Tax=Vanilla planifolia TaxID=51239 RepID=A0A835V2X4_VANPL)

HSP 1 Score: 86.7 bits (213), Expect = 2.160e-16
Identity = 46/129 (35.66%), Postives = 67/129 (51.94%), Query Frame = 1 
Query:  187 GTNSDLAMLFKRLTKKDPTTKLKALSQLQNLCSAAASAAEAPQRGTPPQQEHLHHHQAFLTPDDVIGLVPHWVYIYARLALDNDRRVRESANATLSHVAAANRKAVVPFLRQLLGPWWICMADPASEVA 573
            G +S+LA   KRL +KDPTTK+KAL  L  L                               ++++ ++P WVY Y RL LD +R VR++A+ T++ + A  RK + P L+ L+GPWW    DP  EV+
Sbjct:   57 GVDSELAQHLKRLGRKDPTTKVKALMALCVLLKEKPG-------------------------EEIVHILPLWVYEYKRLLLDYNREVRQAAHDTMTSIVAVVRKGLAPHLKSLMGPWWFAQFDPVPEVS 160
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BLAST of jgi.p|Trimin1|175802 vs. uniprot
Match: A0A7J6H2T7_CANSA (E3 ubiquitin-protein ligase listerin n=1 Tax=Cannabis sativa TaxID=3483 RepID=A0A7J6H2T7_CANSA)

HSP 1 Score: 82.4 bits (202), Expect = 2.400e-16
Identity = 44/131 (33.59%), Postives = 69/131 (52.67%), Query Frame = 1 
Query:  181 YDGTNSDLAMLFKRLTKKDPTTKLKALSQLQNLCSAAASAAEAPQRGTPPQQEHLHHHQAFLTPDDVIGLVPHWVYIYARLALDNDRRVRESANATLSHVAAANRKAVVPFLRQLLGPWWICMADPASEVA 573
            +   +S++A+  KRL +KDPTTKLKALS L  L        E P +                   D++ ++P W + Y RL +D +R VR + + T++++  A  + + P L+ L+GPWW+   D  SEVA
Sbjct:   56 FQDIDSEVAVHLKRLARKDPTTKLKALSSLSELIK------EKPGK-------------------DLVTVIPQWAFEYKRLLMDYNREVRRATHDTMTNLVTAVGRDLAPHLKSLMGPWWLSQFDSVSEVA 161
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BLAST of jgi.p|Trimin1|175802 vs. uniprot
Match: A0A835R074_VANPL (E3 ubiquitin-protein ligase listerin n=1 Tax=Vanilla planifolia TaxID=51239 RepID=A0A835R074_VANPL)

HSP 1 Score: 86.3 bits (212), Expect = 3.380e-16
Identity = 46/129 (35.66%), Postives = 67/129 (51.94%), Query Frame = 1 
Query:  187 GTNSDLAMLFKRLTKKDPTTKLKALSQLQNLCSAAASAAEAPQRGTPPQQEHLHHHQAFLTPDDVIGLVPHWVYIYARLALDNDRRVRESANATLSHVAAANRKAVVPFLRQLLGPWWICMADPASEVA 573
            G +S+LA   KRL +KDPTTK+KAL  L  L                               ++++ ++P WVY Y RL LD +R VR++A+ T++ + A  RK + P L+ L+GPWW    DP  EV+
Sbjct:   57 GVDSELAQHLKRLGRKDPTTKVKALMALCVLFKEKPG-------------------------EEIVHILPLWVYEYKRLLLDYNREVRQAAHDTMTSIVAVVRKGLAPHLKSLMGPWWFAQFDPVPEVS 160
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BLAST of jgi.p|Trimin1|175802 vs. uniprot
Match: A0A7J7FRW2_CAMSI (E3 ubiquitin-protein ligase listerin n=6 Tax=Camellia sinensis TaxID=4442 RepID=A0A7J7FRW2_CAMSI)

HSP 1 Score: 86.3 bits (212), Expect = 3.390e-16
Identity = 46/133 (34.59%), Postives = 70/133 (52.63%), Query Frame = 1 
Query:  175 PFYDGTNSDLAMLFKRLTKKDPTTKLKALSQLQNLCSAAASAAEAPQRGTPPQQEHLHHHQAFLTPDDVIGLVPHWVYIYARLALDNDRRVRESANATLSHVAAANRKAVVPFLRQLLGPWWICMADPASEVA 573
            PF D  + ++A   KRL +KDPTTKLKAL+ L  L    +S                          +++ ++P W + Y RL LD +R VR + + +++ + AA R+ + P L+ L+GPWW    DPASEV+
Sbjct:   54 PFLD-IDGEVAQHLKRLARKDPTTKLKALASLSTLFKQKSS-------------------------KEIVPIIPQWAFEYKRLLLDYNREVRRATHDSMTLLVAAVRRDLAPHLKSLMGPWWFSQFDPASEVS 160
[Close]
BLAST of jgi.p|Trimin1|175802 vs. uniprot
Match: A0A835V189_VANPL (E3 ubiquitin-protein ligase listerin n=1 Tax=Vanilla planifolia TaxID=51239 RepID=A0A835V189_VANPL)

HSP 1 Score: 84.7 bits (208), Expect = 3.980e-16
Identity = 45/129 (34.88%), Postives = 66/129 (51.16%), Query Frame = 1 
Query:  187 GTNSDLAMLFKRLTKKDPTTKLKALSQLQNLCSAAASAAEAPQRGTPPQQEHLHHHQAFLTPDDVIGLVPHWVYIYARLALDNDRRVRESANATLSHVAAANRKAVVPFLRQLLGPWWICMADPASEVA 573
            G +S+LA   KRL +KDPTTK+KAL  L  L                               ++++ ++P WVY Y RL LD +R VR++ + T++ + A  RK + P L+ L+GPWW    DP  EV+
Sbjct:  135 GVDSELAQHLKRLGRKDPTTKVKALMALCVLFKEKPG-------------------------EEIVHILPLWVYEYKRLLLDYNREVRQATHDTMTSIVAVVRKGLAPHLKSLMGPWWFAQFDPVPEVS 238
[Close]
BLAST of jgi.p|Trimin1|175802 vs. uniprot
Match: A0A6V7PDE7_ANACO (E3 ubiquitin-protein ligase listerin n=1 Tax=Ananas comosus var. bracteatus TaxID=296719 RepID=A0A6V7PDE7_ANACO)

HSP 1 Score: 85.9 bits (211), Expect = 4.490e-16
Identity = 47/133 (35.34%), Postives = 69/133 (51.88%), Query Frame = 1 
Query:  175 PFYDGTNSDLAMLFKRLTKKDPTTKLKALSQLQNLCSAAASAAEAPQRGTPPQQEHLHHHQAFLTPDDVIGLVPHWVYIYARLALDNDRRVRESANATLSHVAAANRKAVVPFLRQLLGPWWICMADPASEVA 573
            PF D T+S++A   KRL +KDPTTKLKAL+ L  L    AS                         ++++ +VP W + Y +L  D +R VR + + T+S +  A R+ + P L+ L+GPWW    DP  EV+
Sbjct:   54 PFSD-TDSEIAQNLKRLGRKDPTTKLKALTSLSVLFKQKAS-------------------------EEIVQIVPQWSFEYKKLLHDYNREVRRATHETMSSLVTAIRRGLAPHLKSLMGPWWFSQFDPTPEVS 160
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BLAST of jgi.p|Trimin1|175802 vs. uniprot
Match: A0A5E4EM23_PRUDU (E3 ubiquitin-protein ligase listerin n=13 Tax=Prunus TaxID=3754 RepID=A0A5E4EM23_PRUDU)

HSP 1 Score: 85.9 bits (211), Expect = 4.620e-16
Identity = 45/133 (33.83%), Postives = 70/133 (52.63%), Query Frame = 1 
Query:  175 PFYDGTNSDLAMLFKRLTKKDPTTKLKALSQLQNLCSAAASAAEAPQRGTPPQQEHLHHHQAFLTPDDVIGLVPHWVYIYARLALDNDRRVRESANATLSHVAAANRKAVVPFLRQLLGPWWICMADPASEVA 573
            P+ D  +S+LA+  KRL +KDPTTKLKAL+ L  L    ++                          D+I ++P W + Y RL +D +R VR + + T++++  A  + + P L+ L+GPWW    DP SEV+
Sbjct:   55 PYLD-VDSELALHLKRLARKDPTTKLKALASLSTLLKEKST-------------------------KDIIPIIPQWAFEYKRLVVDYNREVRRATHDTMNNLVTAVGRDLAPQLKSLMGPWWFSQFDPVSEVS 161
The following BLAST results are available for this feature:
BLAST of jgi.p|Trimin1|175802 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
A0A835ZGR8_9STRA1.710e-113100.00E3 ubiquitin-protein ligase listerin (Fragment) n=... [more]
D8LU37_ECTSI2.770e-2439.87E3 ubiquitin-protein ligase listerin n=1 Tax=Ectoc... [more]
I1HVW3_BRADI9.950e-1737.04E3 ubiquitin-protein ligase listerin n=1 Tax=Brach... [more]
A0A835V2X4_VANPL2.160e-1635.66E3 ubiquitin-protein ligase listerin n=1 Tax=Vanil... [more]
A0A7J6H2T7_CANSA2.400e-1633.59E3 ubiquitin-protein ligase listerin n=1 Tax=Canna... [more]
A0A835R074_VANPL3.380e-1635.66E3 ubiquitin-protein ligase listerin n=1 Tax=Vanil... [more]
A0A7J7FRW2_CAMSI3.390e-1634.59E3 ubiquitin-protein ligase listerin n=6 Tax=Camel... [more]
A0A835V189_VANPL3.980e-1634.88E3 ubiquitin-protein ligase listerin n=1 Tax=Vanil... [more]
A0A6V7PDE7_ANACO4.490e-1635.34E3 ubiquitin-protein ligase listerin n=1 Tax=Anana... [more]
A0A5E4EM23_PRUDU4.620e-1633.83E3 ubiquitin-protein ligase listerin n=13 Tax=Prun... [more]

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
Contig_130contigContig_130:61261..61833 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Tribonema minus UTEX_B_31562021-06-17
Properties
Property NameValue
ProteomeIdTrimin1|175802|e_gw1.130.85.1
BRITEko00000,ko01000,ko04121
KEGG koko:K22377
EC2.3.2.27
GOsGO:0005575,GO:0005622,GO:0005623,GO:0005737,GO:0005829,GO:0044424,GO:0044444,GO:0044464
DescriptionE3 ubiquitin-protein ligase
COG categoryO
Max annot lvl35493|Streptophyta
EggNOG OGsCOG5219@1|root,KOG0803@2759|Eukaryota,37RZJ@33090|Viridiplantae,3GFEM@35493|Streptophyta,3KYYM@4447|Liliopsida,3I30Q@38820|Poales
Evalue1.63e-17
Seed ortholog15368.BRADI2G62760.1
Hectar predicted targeting categoryother localisation
TranscriptId176124
TrackFilteredModels1
ProteinId175802
Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesTypePosition
jgi.p|Trimin1|175802gene_14367Tribonema minus UTEX_B_3156 geneContig_130 61261..61833 -


The following exon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
exon_14367_1exon_14367_1Tribonema minus UTEX_B_3156 exonContig_130 61261..61833 -


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
CDS_14367CDS_14367Tribonema minus UTEX_B_3156 CDSContig_130 61261..61833 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
jgi.p|Trimin1|175802Trimin1|175802|e_gw1.130.85.1Tribonema minus UTEX_B_3156 polypeptideContig_130 61261..61833 -


Sequences
The following sequences are available for this feature:

spliced messenger RNA

>mRNA_14367 ID=mRNA_14367|Name=jgi.p|Trimin1|175802|organism=Tribonema minus UTEX_B_3156 |type=mRNA|length=573bp|location=Sequence derived from alignment at Contig_130:61261..61833- (Tribonema minus UTEX_B_3156 )|Notes=Excludes all bases but those of type(s): exon.  
ATGCAGAAGCGGCGGAACTCATCAGGAGGGAGTGCGGGGCTGGCCTCACT
GCCTGGGGGCAGCGGCGGTGCAGGTTTCATTGGGTTCTCGAGCTTTGCAG
CCAATGGATCCACTTTCGCAGCCGCAGCAGATGCCAACGCGGGATCCGTT
CAGCCCGCTGCAAGGCCTTTGCCGCCGTTCTACGACGGCACCAACTCAGA
TTTGGCTATGCTCTTTAAAAGGCTGACCAAAAAAGACCCCACGACGAAGC
TCAAGGCCTTGTCGCAACTTCAGAACCTGTGCTCTGCAGCCGCGAGTGCT
GCTGAGGCGCCTCAACGCGGCACTCCACCGCAGCAAGAGCATCTCCACCA
CCATCAAGCCTTCTTGACGCCAGACGACGTCATTGGCCTCGTCCCTCATT
GGGTGTACATTTATGCCCGCTTGGCACTAGACAATGACAGGCGCGTCCGC
GAGTCGGCCAACGCCACTCTCTCTCATGTAGCTGCGGCGAATCGCAAGGC
CGTGGTTCCTTTTTTGCGACAGCTCCTGGGCCCGTGGTGGATTTGTATGG
CGGACCCAGCCTCGGAGGTCGCA
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protein sequence of jgi.p|Trimin1|175802

>Trimin1|175802|e_gw1.130.85.1 ID=Trimin1|175802|e_gw1.130.85.1|Name=jgi.p|Trimin1|175802|organism=Tribonema minus UTEX_B_3156 |type=polypeptide|length=191bp
MQKRRNSSGGSAGLASLPGGSGGAGFIGFSSFAANGSTFAAAADANAGSV
QPAARPLPPFYDGTNSDLAMLFKRLTKKDPTTKLKALSQLQNLCSAAASA
AEAPQRGTPPQQEHLHHHQAFLTPDDVIGLVPHWVYIYARLALDNDRRVR
ESANATLSHVAAANRKAVVPFLRQLLGPWWICMADPASEVA
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mRNA from alignment at Contig_130:61261..61833-

Legend: exonpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_14367 ID=mRNA_14367|Name=jgi.p|Trimin1|175802|organism=Tribonema minus UTEX_B_3156 |type=mRNA|length=573bp|location=Sequence derived from alignment at Contig_130:61261..61833- (Tribonema minus UTEX_B_3156 )
ATGCAGAAGCGGCGGAACTCATCAGGAGGGAGTGCGGGGCTGGCCTCACT
GCCTGGGGGCAGCGGCGGTGCAGGTTTCATTGGGTTCTCGAGCTTTGCAG
CCAATGGATCCACTTTCGCAGCCGCAGCAGATGCCAACGCGGGATCCGTT
CAGCCCGCTGCAAGGCCTTTGCCGCCGTTCTACGACGGCACCAACTCAGA
TTTGGCTATGCTCTTTAAAAGGCTGACCAAAAAAGACCCCACGACGAAGC
TCAAGGCCTTGTCGCAACTTCAGAACCTGTGCTCTGCAGCCGCGAGTGCT
GCTGAGGCGCCTCAACGCGGCACTCCACCGCAGCAAGAGCATCTCCACCA
CCATCAAGCCTTCTTGACGCCAGACGACGTCATTGGCCTCGTCCCTCATT
GGGTGTACATTTATGCCCGCTTGGCACTAGACAATGACAGGCGCGTCCGC
GAGTCGGCCAACGCCACTCTCTCTCATGTAGCTGCGGCGAATCGCAAGGC
CGTGGTTCCTTTTTTGCGACAGCTCCTGGGCCCGTGGTGGATTTGTATGG
CGGACCCAGCCTCGGAGGTCGCA
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Coding sequence (CDS) from alignment at Contig_130:61261..61833-

>mRNA_14367 ID=mRNA_14367|Name=jgi.p|Trimin1|175802|organism=Tribonema minus UTEX_B_3156 |type=CDS|length=573bp|location=Sequence derived from alignment at Contig_130:61261..61833- (Tribonema minus UTEX_B_3156 )
ATGCAGAAGCGGCGGAACTCATCAGGAGGGAGTGCGGGGCTGGCCTCACT
GCCTGGGGGCAGCGGCGGTGCAGGTTTCATTGGGTTCTCGAGCTTTGCAG
CCAATGGATCCACTTTCGCAGCCGCAGCAGATGCCAACGCGGGATCCGTT
CAGCCCGCTGCAAGGCCTTTGCCGCCGTTCTACGACGGCACCAACTCAGA
TTTGGCTATGCTCTTTAAAAGGCTGACCAAAAAAGACCCCACGACGAAGC
TCAAGGCCTTGTCGCAACTTCAGAACCTGTGCTCTGCAGCCGCGAGTGCT
GCTGAGGCGCCTCAACGCGGCACTCCACCGCAGCAAGAGCATCTCCACCA
CCATCAAGCCTTCTTGACGCCAGACGACGTCATTGGCCTCGTCCCTCATT
GGGTGTACATTTATGCCCGCTTGGCACTAGACAATGACAGGCGCGTCCGC
GAGTCGGCCAACGCCACTCTCTCTCATGTAGCTGCGGCGAATCGCAAGGC
CGTGGTTCCTTTTTTGCGACAGCTCCTGGGCCCGTGGTGGATTTGTATGG
CGGACCCAGCCTCGGAGGTCGCA
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