mRNA_14362 (mRNA) Tribonema minus UTEX_B_3156
Overview
Homology
BLAST of jgi.p|Trimin1|16489 vs. uniprot
Match: A0A835ZDA3_9STRA (PsbP domain-containing protein (Fragment) n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A835ZDA3_9STRA) HSP 1 Score: 306 bits (783), Expect = 2.750e-105 Identity = 153/153 (100.00%), Postives = 153/153 (100.00%), Query Frame = 1 Query: 1 AGTAALALPALAAGTTEYVDDKFKFRFEVPAGWTQTETEISGRRKVVIWTSDGSANAFIAVTPVRGDFTSLGSFGTADEVSQTLIPNGKGISGEMLNVKSKNSMYYYDYIIAQEGRPEKHLKSVWSVVSGDALVTLTAQCDEANYPAYASQMD 459 AGTAALALPALAAGTTEYVDDKFKFRFEVPAGWTQTETEISGRRKVVIWTSDGSANAFIAVTPVRGDFTSLGSFGTADEVSQTLIPNGKGISGEMLNVKSKNSMYYYDYIIAQEGRPEKHLKSVWSVVSGDALVTLTAQCDEANYPAYASQMD Sbjct: 1 AGTAALALPALAAGTTEYVDDKFKFRFEVPAGWTQTETEISGRRKVVIWTSDGSANAFIAVTPVRGDFTSLGSFGTADEVSQTLIPNGKGISGEMLNVKSKNSMYYYDYIIAQEGRPEKHLKSVWSVVSGDALVTLTAQCDEANYPAYASQMD 153
BLAST of jgi.p|Trimin1|16489 vs. uniprot
Match: D7FSF3_ECTSI (PsbP domain-containing protein n=2 Tax=Ectocarpus TaxID=2879 RepID=D7FSF3_ECTSI) HSP 1 Score: 149 bits (377), Expect = 1.760e-42 Identity = 73/146 (50.00%), Postives = 100/146 (68.49%), Query Frame = 1 Query: 34 AAGTTE-YVDDKFKFRFEVPAGWTQTETEISGRRKVVIWTSDGS--ANAFIAVTPVRGDFTSLGSFGTADEVSQTLIPNGKGISGEMLNVKSKNSMYYYDYIIAQEGRPEKHLKSVWSVVSGDA-LVTLTAQCDEANYPAYASQMD 459 AAG + + DD F F+VP GW + + EISGRRK+V++TS + ANAF+A TP RGDFT+LGSFGT DEVS+T++P G+S ML + + Y YDYI+ QEGRPEKH+K++W + L T+TAQC+E++Y +D Sbjct: 75 AAGNAQTFTDDALGFNFDVPDGWERNDAEISGRRKIVVYTSPTTPGANAFVAYTPARGDFTTLGSFGTLDEVSKTVLPEASGVSSRMLESYTYKNSYVYDYIVDQEGRPEKHIKTMWVLFPEQGQLATITAQCNESDYAKVGKTID 220
BLAST of jgi.p|Trimin1|16489 vs. uniprot
Match: A0A6V1S113_HETAK (Hypothetical protein n=1 Tax=Heterosigma akashiwo TaxID=2829 RepID=A0A6V1S113_HETAK) HSP 1 Score: 141 bits (356), Expect = 2.580e-39 Identity = 71/148 (47.97%), Postives = 96/148 (64.86%), Query Frame = 1 Query: 22 LPALAAGTTEYVDDKFKFRFEVPAGWTQTETEISGRRKVVIWTSDG--SANAFIAVTPVRGDFTSLGSFGTADEVSQTLIPNGKGISGEMLNVKSKNSMYYYDYIIAQEGRPEKHLKSVWSVVSGD---ALVTLTAQCDEANYPAYAS 450 LPA+A + D K + F+VP GW ++E ISG R V I+ + G +ANAF+A TP+RGD+TSLGSFG D V T++P G GI L +S+ Y+YDY + QEGRPEK LK++++VV + LVT TAQCD A+Y Y + Sbjct: 69 LPAVAEDLMKVTDTKGAYSFQVPPGWEKSEAAISGGRTVTIFAAPGRPAANAFVAATPLRGDYTSLGSFGNLDYVESTVVPKGPGIESRCLESRSQRGTYFYDYTVKQEGRPEKRLKTIFAVVPDEFSPVLVTFTAQCDVADYEEYGT 216
BLAST of jgi.p|Trimin1|16489 vs. uniprot
Match: A0A7R9ZSX9_9STRA (Hypothetical protein n=1 Tax=Craspedostauros australis TaxID=1486917 RepID=A0A7R9ZSX9_9STRA) HSP 1 Score: 117 bits (294), Expect = 6.420e-30 Identity = 67/152 (44.08%), Postives = 95/152 (62.50%), Query Frame = 1 Query: 49 EYVDDKFKFRFEVPAGWTQTETEISGRRKVVIWTSDGSANA---FIAVTPVRGDFTSLGSFGTADEVSQT-LIPNGKGISGE-----MLNVKSKNSMYYYDYIIAQEGRPEKHLKSVWSVVSGDA------LVTLTAQCDEANYPAYASQMD 459 +Y D KF +VPAGW +E E++ RRK+ ++ S F+A TPVR DFTSLGSFG+ D+V+QT ++P GK I GE ML+ +SKNS Y++DY G+PE H ++++S+ +G LV+LTAQC EA+Y A+ D Sbjct: 79 DYKDPDCKFSIKVPAGWDFSEQELADRRKIKLYLEPNSNRKTLFFMAFTPVRDDFTSLGSFGSVDQVAQTTILPKGK-IMGEENSSTMLSAESKNSAYFFDYKQKVSGQPETHFRTIFSLANGATGGAGAVLVSLTAQCPEADYDAFKPLFD 229
BLAST of jgi.p|Trimin1|16489 vs. uniprot
Match: A0A7S4EZ64_CHRCT (Hypothetical protein n=1 Tax=Chrysotila carterae TaxID=13221 RepID=A0A7S4EZ64_CHRCT) HSP 1 Score: 112 bits (281), Expect = 4.210e-28 Identity = 61/144 (42.36%), Postives = 89/144 (61.81%), Query Frame = 1 Query: 49 EYVDDKFKFRFEVPAGWTQTETEISGRRKVVIWT--SDGSANAFIAVTPVRGDFTSLGSFGTADEVSQTLIP---NGK------GISGEMLNVKSKNSMYYYDYIIAQEGRPEKHLKSVWSVVS----GDALVTLTAQCDEANY 435 EYVD ++ F VP+GW+ E+E+SG RK++ T +D N F+A TP+RGD+TSLGSFG D V T++P NG GI G+M+ + Y +DY+I Q G+P + L++++SV + G L+TLTAQC + Y Sbjct: 64 EYVDQEYGVSFVVPSGWSPEESELSGGRKLLAATDPADTDFNLFVAFTPIRGDYTSLGSFGNIDFVGSTILPQCPNGACTLETDGIRGKMIAQSTGRGAYIFDYLIEQTGQPSRRLRTLFSVQTVEGRGQNLITLTAQCRQERY 207
BLAST of jgi.p|Trimin1|16489 vs. uniprot
Match: A0A7S2WCD2_9STRA (Hypothetical protein n=1 Tax=Rhizochromulina marina TaxID=1034831 RepID=A0A7S2WCD2_9STRA) HSP 1 Score: 105 bits (262), Expect = 2.950e-25 Identity = 61/156 (39.10%), Postives = 92/156 (58.97%), Query Frame = 1 Query: 1 AGTAALALPALAAGTT--EYVDDKFKFRFEVPAGWTQTETEISGR------RKVVIWTS--DGSANAFIAVTPVRGDFTSLGSFGTADEVSQTLIPNGKGISGEMLNVKSKNSMYYYDYIIAQE-GRPEKHLKSVWSVVSGDALVTLTAQCDEANY 435 A AAL+ P +A G Y D F+VP+ WT++++ ++ RK+V++ D NAFIA TPVRGD+T++ SFGT + V + ++P G GI +L+ K YY+DY I + P + LK+V+++V GD LVTLT+Q +A Y Sbjct: 49 ASLAALSCPPVAWGADVQSYTDKATGSEFQVPSSWTRSDSSLATDPGMGLDRKLVLFVDPDDQDTNAFIAFTPVRGDYTAISSFGTLETVGRFIVPQGPGIESALLSSKVGAGKYYFDYQIKPDPNEPMRRLKTVFALVPGDTLVTLTSQTTQARY 204
BLAST of jgi.p|Trimin1|16489 vs. uniprot
Match: A0A448ZBR8_9STRA (PsbP domain-containing protein n=1 Tax=Pseudo-nitzschia multistriata TaxID=183589 RepID=A0A448ZBR8_9STRA) HSP 1 Score: 105 bits (262), Expect = 3.090e-25 Identity = 58/153 (37.91%), Postives = 88/153 (57.52%), Query Frame = 1 Query: 28 ALAAGTTEYVDDKFKFRFEVPAGWTQTETEISGRRKVVIWTSDGSANA---FIAVTPVRGDFTSLGSFGTADEVSQ-TLIPNGK-----GISGEMLNVKSKNSMYYYDYIIAQEGRPEKHLKSVWSVVSG------DALVTLTAQCDEANYPA 441 A A Y + KF ++P+ WT TE + RRK++++ S FIA TP R DFTSLGSFG+ DEV Q T++P + GI EML+ SK Y++DY+ + +P+ H ++++S+ +G + LVT+TAQ E++Y A Sbjct: 62 AAATPLARYENSNCKFSIDLPSEWTMTEQSLPDRRKIILYIKPDSNQKTLFFIAFTPTRDDFTSLGSFGSVDEVGQATILPKAELAAKQGIESEMLSAVSKKQAYFFDYVQSVPSQPKTHFRTIFSLATGATGGAGNVLVTITAQTPESDYAA 214
BLAST of jgi.p|Trimin1|16489 vs. uniprot
Match: B7FU11_PHATC (Predicted protein n=2 Tax=Phaeodactylum tricornutum TaxID=2850 RepID=B7FU11_PHATC) HSP 1 Score: 104 bits (259), Expect = 7.520e-25 Identity = 65/173 (37.57%), Postives = 98/173 (56.65%), Query Frame = 1 Query: 1 AGTAALALPALAAGT-----TEYVDDKFKFRFEVPAGWTQTETEISGRRKVVIWT--SDGSANAFIAVTPVRGDFTSLGSFGTADEVS-QTLIPN----GKGISGEMLNVKSKNSMYYYDYIIAQEG-RPEKHLKSVWSVV------SGDALVTLTAQCDEANYPA-YASQMD 459 A AA+ P+ A T ++D + F +VP+ W++TE ++S RR +V+WT +D A+ F+A TPVR DFTSLGSFG+ D+V+ QT++P G + ML S+ Y++DY A +P H ++++++ +G LVTLTAQC E Y Y S D Sbjct: 41 ASAAAVGFPSTAVAVSVPTLTPFLDSRHGFTVDVPSQWSRTEQQLSDRRTIVVWTDPADARASVFVAYTPVRDDFTSLGSFGSVDQVAAQTILPKAQIAGVDVEATMLAAVSQKQAYFFDYRQAVPNVQPPTHFRTIFTLQQGATGGAGAVLVTLTAQCPEELYATKYQSLFD 213
BLAST of jgi.p|Trimin1|16489 vs. uniprot
Match: A0A7S4JNE5_9STRA (Hypothetical protein n=1 Tax=Odontella aurita TaxID=265563 RepID=A0A7S4JNE5_9STRA) HSP 1 Score: 102 bits (255), Expect = 5.010e-24 Identity = 64/164 (39.02%), Postives = 97/164 (59.15%), Query Frame = 1 Query: 10 AALALPALA-----AGTTEYVDDKFKFRFEVPAGWTQTETEISGRRKVVIWTSDGSAN-----AFIAVTPVRGDFTSLGSFGTADEVSQ-TLIPNGKGISGE-----MLNVKSKNSMYYYDYIIAQEGRPEKHLKSVWSVV------SGDALVTLTAQCDEANY 435 AA++LP LA A +VD + F+ VP GW +TE ++ RRK+ ++ S + FIA TPVR DFT LGSFG+ D+V+Q T++P G I+GE M+N +SK + Y +DY+ +PE+H ++++++ +G LVTLTAQ E+ Y Sbjct: 67 AAVSLPDLAIADSGAKLEPFVDKECGFQILVPVGWERTEQSLADRRKINLFVDPSSGDDDKTILFIAYTPVRDDFTQLGSFGSVDQVAQMTIMPKGN-IAGEETVSSMINAESKKNAYIFDYMSKVPKQPERHFRTIFTLAQGATGGAGSVLVTLTAQTPESRY 229
BLAST of jgi.p|Trimin1|16489 vs. uniprot
Match: A0A0M0J7U2_9EUKA (Psbp domain-containing protein chloroplastic-like protein n=1 Tax=Chrysochromulina tobinii TaxID=1460289 RepID=A0A0M0J7U2_9EUKA) HSP 1 Score: 102 bits (253), Expect = 5.010e-24 Identity = 62/160 (38.75%), Postives = 89/160 (55.62%), Query Frame = 1 Query: 25 PALAAGT--TEYVDDKFKFRFEVPAGWTQTETEISGRRKVVIWT--SDGSANAFIAVTPVRGDFTSLGSFGTADEVSQTLIP-----------NGKGISGEMLNVKSKNSMYYYDYIIAQEGRPEKHLKSVWSVVSGDA---LVTLTAQCDEANYPAYAS 450 PA AA T Y D+++ F +P G+ E++ R++V T +D + N FIA TP+R D+TSLGSFGT D + TL+P +G I G ML S + YDY I Q+G P +HL+S+ ++ + A L+TLTAQC E + A A+ Sbjct: 46 PAAAASALPTSYKDERYGVSFLLPEGYVMKPQELADGRRLVTATDPNDDTTNVFIAFTPIRPDYTSLGSFGTIDFIGSTLLPQCGSNGACAFASGDDIEGVMLEQASVKGSFVYDYTIQQQGGPMRHLRSLLAIKADGAASVLITLTAQCLEPKHAAVAA 205 The following BLAST results are available for this feature:
BLAST of jgi.p|Trimin1|16489 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90) Total hits: 23
Pagesback to topAlignments
The following features are aligned
Analyses
This mRNA is derived from or has results from the following analyses
Properties
Relationships
This mRNA is a part of the following gene feature(s):
The following polypeptide feature(s) derives from this mRNA:
The following exon feature(s) are a part of this mRNA:
The following CDS feature(s) are a part of this mRNA:
Sequences
The following sequences are available for this feature:
spliced messenger RNA >mRNA_14362 ID=mRNA_14362|Name=jgi.p|Trimin1|16489|organism=Tribonema minus UTEX_B_3156 |type=mRNA|length=460bp|location=Sequence derived from alignment at Contig_130:36734..39266- (Tribonema minus UTEX_B_3156 )|Notes=Excludes all bases but those of type(s): exon. GCCGGGACCGCGGCCCTTGCATTGCCAGCCCTAGCTGCTGGAACAACGGAback to top protein sequence of jgi.p|Trimin1|16489 >Trimin1|16489|CE16488_18 ID=Trimin1|16489|CE16488_18|Name=jgi.p|Trimin1|16489|organism=Tribonema minus UTEX_B_3156 |type=polypeptide|length=153bp AGTAALALPALAAGTTEYVDDKFKFRFEVPAGWTQTETEISGRRKVVIWTback to top mRNA from alignment at Contig_130:36734..39266- Legend: polypeptideexonCDS Hold the cursor over a type above to highlight its positions in the sequence below.>mRNA_14362 ID=mRNA_14362|Name=jgi.p|Trimin1|16489|organism=Tribonema minus UTEX_B_3156 |type=mRNA|length=2533bp|location=Sequence derived from alignment at Contig_130:36734..39266- (Tribonema minus UTEX_B_3156 )back to top Coding sequence (CDS) from alignment at Contig_130:36734..39266- >mRNA_14362 ID=mRNA_14362|Name=jgi.p|Trimin1|16489|organism=Tribonema minus UTEX_B_3156 |type=CDS|length=460bp|location=Sequence derived from alignment at Contig_130:36734..39266- (Tribonema minus UTEX_B_3156 )back to top |