mRNA_14340 (mRNA) Tribonema minus UTEX_B_3156

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
Namejgi.p|Trimin1|150292
Unique NamemRNA_14340
TypemRNA
OrganismTribonema minus UTEX_B_3156 (Tribonema minus UTEX_B_3156 )
Homology
BLAST of jgi.p|Trimin1|150292 vs. uniprot
Match: A0A836CKE0_9STRA (tRNA-dihydrouridine synthase (Fragment) n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A836CKE0_9STRA)

HSP 1 Score: 604 bits (1557), Expect = 1.980e-218
Identity = 299/299 (100.00%), Postives = 299/299 (100.00%), Query Frame = 1
Query:    1 FYKAIGSPTYVAAPMVEQSEKAFRLLCRRHGCDLAYTQMLHAQQFSMLKAAKFRCVCCGGEDPQEDRPLIAQFCGNDPELLVKAARYVEHQVEACDLNLGCPQQIAKKGNYGAYLLPQGDLCERLIDAMASQLACPVTVKIRCLSTVEETVKLALRLEGAGVQLITVHGRTVRSAKTDNGPADWSIIREVKAALRIPVVANGGIETFADAERCLALTGADAIMSSEALLEDPALFDRSLPGLHEVSGAALAQRQLALAGEYLQLVQLYPPAIGAGPVRAHLFKMLHRLLGCHTDLRGRL 897
            FYKAIGSPTYVAAPMVEQSEKAFRLLCRRHGCDLAYTQMLHAQQFSMLKAAKFRCVCCGGEDPQEDRPLIAQFCGNDPELLVKAARYVEHQVEACDLNLGCPQQIAKKGNYGAYLLPQGDLCERLIDAMASQLACPVTVKIRCLSTVEETVKLALRLEGAGVQLITVHGRTVRSAKTDNGPADWSIIREVKAALRIPVVANGGIETFADAERCLALTGADAIMSSEALLEDPALFDRSLPGLHEVSGAALAQRQLALAGEYLQLVQLYPPAIGAGPVRAHLFKMLHRLLGCHTDLRGRL
Sbjct:    1 FYKAIGSPTYVAAPMVEQSEKAFRLLCRRHGCDLAYTQMLHAQQFSMLKAAKFRCVCCGGEDPQEDRPLIAQFCGNDPELLVKAARYVEHQVEACDLNLGCPQQIAKKGNYGAYLLPQGDLCERLIDAMASQLACPVTVKIRCLSTVEETVKLALRLEGAGVQLITVHGRTVRSAKTDNGPADWSIIREVKAALRIPVVANGGIETFADAERCLALTGADAIMSSEALLEDPALFDRSLPGLHEVSGAALAQRQLALAGEYLQLVQLYPPAIGAGPVRAHLFKMLHRLLGCHTDLRGRL 299          
BLAST of jgi.p|Trimin1|150292 vs. uniprot
Match: D7G7Q4_ECTSI (Dihydrouridine synthase n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7G7Q4_ECTSI)

HSP 1 Score: 363 bits (933), Expect = 3.120e-121
Identity = 187/300 (62.33%), Postives = 224/300 (74.67%), Query Frame = 1
Query:    1 FYKAIGSPTYVAAPMVEQSEKAFRLLCRRHGCDLAYTQMLHAQQFSMLKAAKFRCVCCGGEDPQEDRPLIAQFCGNDPELLVKAARYVEHQVEACDLNLGCPQQIAKKGNYGAYLLPQGDLCERLIDAMASQLACPVTVKIRCLSTVEETVKLALRLEGAGVQLITVHGRTVRSAKTDNGPADWSIIREVKAALRIPVVANGGIETFADAERCLALTGADAIMSSEALLEDPALFDRSLPGLHEVSGAALAQRQLALAGEYLQLVQLYP-PAIGAGPVRAHLFKMLHRLLGCHTDLRGRL 897
            F++ IG P Y+AAPMVEQSE AFR L RRHGC LAYTQMLHA++F+   A KFR     G D +EDRPLI QFCGN+P+ +V+AAR+VEH+ +A DLNLGCPQ+IAKKGNYGAYLLP   LCE ++ AM+ +L+ PVTVKIR      +T+ LA RLEGAG QL+TVHGRTV S KT  G ADW IIR+VK  + IPVVANGGIET ADAER L  TGADA+MSSE LLE+PALFD  L  + E+ G  +A R L+   EY++LV+ YP P I    ++ HLFKML+RLL CH DLR RL
Sbjct:   87 FFEQIGRPKYIAAPMVEQSEAAFRYLVRRHGCGLAYTQMLHAEKFAPDNAEKFRRRRFDGVDDEEDRPLIVQFCGNNPDTVVRAARHVEHRCDAVDLNLGCPQKIAKKGNYGAYLLPNPQLCEDIVAAMSRELSVPVTVKIRAQDRESDTLDLARRLEGAGAQLLTVHGRTVSSQKTKQGAADWDIIRKVKEVVDIPVVANGGIETGADAERLLEETGADAVMSSEGLLENPALFDSDLIPMEELQGLEVAHRILSFTTEYMELVKRYPAPMIS---IKGHLFKMLYRLLECHHDLRARL 383          
BLAST of jgi.p|Trimin1|150292 vs. uniprot
Match: A0A6H5JD10_9PHAE (Reverse transcriptase domain-containing protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JD10_9PHAE)

HSP 1 Score: 348 bits (894), Expect = 2.780e-107
Identity = 188/333 (56.46%), Postives = 225/333 (67.57%), Query Frame = 1
Query:    1 FYKAIGSPTYVAAPMVEQSEKAFRLLCRRHGCDLAYTQMLHAQQFSMLKAAKFRCVCCGGEDPQEDRPLIAQFCGNDPELLVKAARYVEHQVEACDLNLGCPQQIAKKGNYGAYLLPQGDLCERLIDAMASQLACPVTVKIRCLSTVEETVKLALRLEGAGVQLITVHGRTVRSAKTDNGPADWSIIREVKAALRIPVVANGGIETFADAERCLALTGADAIMSSEALLEDPALFDRSLPGLHEVSGAAL---------------------------------AQRQLALAGEYLQLVQLYP-PAIGAGPVRAHLFKMLHRLLGCHTDLRGRL 897
            F++ IG P Y+AAPMVEQSE AFR L RRHGC LAYTQMLHA++F+   A KFR     G D +EDRPLI QFCGN+P+ +V+AAR+VEH+ +A DLNLGCPQ+IAKKGNYGAYLLP   LCE ++ AM+ +L+ PVTVKIR      +T+ LA RLEGAG QL+TVHGRTV S KT  G A+W IIR+VK    IPVVANGGIET ADAER L  TGADA+MSSE LLE+PALFDR L  + E+ G  +                                 A R L+   EY++LV+LYP P I    ++ HLFKML+RLL CH DLR RL
Sbjct:   87 FFERIGRPKYIAAPMVEQSEAAFRYLVRRHGCGLAYTQMLHAEKFAPDNAEKFRRRRFDGVDDEEDRPLIVQFCGNNPDTVVRAARHVEHRCDAVDLNLGCPQKIAKKGNYGAYLLPNPQLCEDIVAAMSRELSVPVTVKIRAQDKDSDTLDLARRLEGAGAQLLTVHGRTVSSQKTKQGAANWDIIRKVKEVAGIPVVANGGIETGADAERLLEETGADAVMSSEGLLENPALFDRDLIPIEELQGVEVRRVSSFSCYSARRTPRMFFTCLTINAGLPGPQVAHRILSFTTEYMELVKLYPAPMIS---IKGHLFKMLYRLLECHHDLRARL 416          
BLAST of jgi.p|Trimin1|150292 vs. uniprot
Match: A0A7S3UVI5_HETAK (Hypothetical protein n=2 Tax=Heterosigma akashiwo TaxID=2829 RepID=A0A7S3UVI5_HETAK)

HSP 1 Score: 298 bits (764), Expect = 3.410e-96
Identity = 164/298 (55.03%), Postives = 202/298 (67.79%), Query Frame = 1
Query:   43 MVEQSEKAFRLLCRRHGCDLAYTQMLHAQQFSMLKAAKFRCVCCGGEDPQE--DRPLIAQFCGNDPELLVKAARYVEHQVEACDLNLGCPQQIAKKGNYGAYLLPQGDLCERLIDAMASQLA---CPVTVKIRCLS------TVEETVKLALRLEGAGVQLITVHGRTVRSAKTDNGPADWSIIREVKAALRIPVVANGGIETFADAERCLALTGADAIMSSEALLEDPALFD---RSLPGLHEVSGAALAQRQLALAGEYLQLVQLYPPAIGAGPVRAHLFKMLHRLLGCHTDLRGR 894
            MV+QS+ AFRLLCR++G  LAYTQMLH+  FS    + FR     G DP+E  DRPLIAQF GN PE +VKAA+Y+EHQV+A DLN GCPQQIA+KGNYGA+LL   DLC  L+ A+AS+ A   CP TVK+RCL        +E TV  A R+   G QL+ +HGRTV  +KT+ G ADW +IR VK  + IPV+ANGGIE F D +RCL +TGADA+MSSEALLE+P LFD    S   L  + GA  A RQL LA EYL+LV  +P   G    ++H+FK L+RL     DLR +
Sbjct:    1 MVQQSDLAFRLLCRKYGTTLAYTQMLHSSHFSTPSNSFFRETNFDGLDPEETIDRPLIAQFNGNVPETVVKAAKYIEHQVDAIDLNFGCPQQIARKGNYGAFLLENEDLCAALVSALASRPAASTCPPTVKMRCLPGPDGRPDLERTVAFAQRMAAEGAQLLCLHGRTVEQSKTNAGSADWEVIRLVKQEVDIPVIANGGIENFDDVQRCLQITGADAVMSSEALLENPMLFDPARSSAAALAALDGAGWAHRQLGLALEYLELVARHPTHYGT--FKSHVFKFLYRLFEEQKDLRAK 296          
BLAST of jgi.p|Trimin1|150292 vs. uniprot
Match: A0A7S2C8F7_9STRA (Hypothetical protein n=3 Tax=Dictyocha speculum TaxID=35687 RepID=A0A7S2C8F7_9STRA)

HSP 1 Score: 294 bits (752), Expect = 4.800e-94
Identity = 164/329 (49.85%), Postives = 211/329 (64.13%), Query Frame = 1
Query:    1 FYKAIGSPTYVAAPMVEQSEKAFRLLCRRHGCDLAYTQMLHAQQFSMLKAAKFRCVCCGG--EDPQ-----EDRPLIAQFCGNDPELLVKAARYVEHQVEACDLNLGCPQQIAKKGNYGAYLLPQGDLCERLIDAMASQLACPVTVKIRCLSTVEETVKLALRLEGAGVQLITVHGRTVRSAKTDNGPADWSIIREVKAALRIPVVANGGIETFADAERCLALTGADAIMSSEALLEDPALFDRSLPGLHEVSGAA-----------------------LAQRQLALAGEYLQLVQLYPPAIGAGPVRAHLFKMLHRLLGCHTDLRGRL 897
            F + +G P +VAAPMV QS+ AFRLL RRHG DLA+TQMLHA+ F+ +   ++R     G   D Q     EDRPLIAQFCGNDP  +V+AA Y++  V+A DLNLGCPQ+IAKKG YGA+LL +  L   +++ MA+ L  P+TVKIR L T EETV+ A  L+ AG  ++TVHGRTV+  K  +  ADWS++R V+ AL IPVVANGGIET +DA RCL  TGAD +MSSEALLE+P LF ++     ++ G+                        +A RQL+   EY+ L  L+P     G  + H FKML+RLL  HTD+R RL
Sbjct:   58 FLERLGHPKFVAAPMVGQSDLAFRLLVRRHGADLAFTQMLHAKNFATVP--RYREDNFDGFLRDDQSTYAMEDRPLIAQFCGNDPGTVVEAASYIQDHVDAIDLNLGCPQKIAKKGRYGAFLLSEPVLVRSIVERMATSLDVPITVKIRMLPTKEETVQFACMLQDAGAAMVTVHGRTVKQNKNLSERADWSVVRAVREALTIPVVANGGIETTSDALRCLVETGADMVMSSEALLENPGLFQQNTDHSQDLVGSEGGALNGGTSRSEMDYSEWCEAQLVAARQLSYMREYIALSTLFPARDVIGTTKGHAFKMLYRLLEVHTDVRERL 384          
BLAST of jgi.p|Trimin1|150292 vs. uniprot
Match: W7TKF8_9STRA (Dihydrouridine synthase n=2 Tax=Nannochloropsis gaditana TaxID=72520 RepID=W7TKF8_9STRA)

HSP 1 Score: 278 bits (712), Expect = 5.050e-87
Identity = 154/314 (49.04%), Postives = 202/314 (64.33%), Query Frame = 1
Query:   13 IGSPTYVAAPMVEQSEKAFRLLCRRHGCDLAYTQMLHAQQFSMLKAAKFRCVCCGGEDPQE--DRPLIAQFCGNDPELLVKAARYVEHQVEACDLNLGCPQQIAKKGNYGAYLLPQGDLCERLIDAMASQLACPVTVKIRCLSTVEETVKLALRLEGAGVQLITVHGRTVRSAKTDNGPADWSIIREVKAALRIPVVANGGIETFADAERCLALTGADAIMSSEALLEDPALFDRSLPGL---------------HEVSGAALAQRQLALAGEYLQLVQLYPPAIGAGPVRAHLFKMLHRLLG--CHTDLRGRL 897
            +G+P ++AAPMV+QS+ AFR L RR+G DLAYTQM HA  F+ +K  +       G  P+   DRPLIAQF G+  + LV+AA  ++H+V+A DLNLGCPQ+IAK+G+YGAYLL + +L  RL+  M   LA PVT KIR L    +T++L   +E AGV L+T+HGRT    K   G ADW+ I ++K A  IPVVANGG+ET+ DA  C ++TGADA+MSSE LLE+P+LF   LPG                 EV   ALA RQL  A EYL+L + + P  G   V+ HLFKML+ +L    + DLR +L
Sbjct:  126 LGNPRWIAAPMVQQSDLAFRTLVRRYGIDLAYTQMFHATNFANVKVYREENWDGLGNAPENAFDRPLIAQFAGDSADELVRAASLIQHEVDAVDLNLGCPQRIAKRGHYGAYLLEERNLVVRLLSHMVKHLAVPVTTKIRLLPNERDTLELVKAIEDAGVALLTIHGRTREQNKMSVGKADWAAINKIKCACHIPVVANGGVETYEDALACQSVTGADAVMSSEGLLENPSLF---LPGSSLLVGGERSRMQSCEREVEAFALAHRQLNFAQEYLELAKKFWPREGVATVKGHLFKMLYHILEVPANYDLREKL 436          
BLAST of jgi.p|Trimin1|150292 vs. uniprot
Match: J9IYU7_9SPIT (tRNA-dihydrouridine synthase n=1 Tax=Oxytricha trifallax TaxID=1172189 RepID=J9IYU7_9SPIT)

HSP 1 Score: 273 bits (698), Expect = 6.230e-86
Identity = 139/299 (46.49%), Postives = 189/299 (63.21%), Query Frame = 1
Query:    1 FYKAIGSPTYVAAPMVEQSEKAFRLLCRRHGCDLAYTQMLHAQQFSMLKAAKFRCVCCGGEDPQEDRPLIAQFCGNDPELLVKAARYVEHQVEACDLNLGCPQQIAKKGNYGAYLLPQGDLCERLIDAMASQLACPVTVKIRCLSTVEETVKLALRLEGAGVQLITVHGRTVRSAKTDNGPADWSIIREVKAALRIPVVANGGIETFADAERCLALTGADAIMSSEALLEDPALFDRSLPGLHEVSGAALAQRQLALAGEYLQLVQLYPPAIGAGPVRAHLFKMLHRLLGCHTDLRGRL 897
            +Y++IGSP ++ APMV+QSE  +R+L R++   L YT M H + FS  +  +    C       EDRPL  QFC NDP++L+KAARYVE+  +A D+N GCPQ IA+KG YG++LL + ++   L+  +A  L  PVT KIRCL   EET+KLA  +E  G  ++ VHGRT    K   GPA+W II+++K +LRIPV+ANGG+ TF D   CL  TG D +MSSE++LE PALFD   P L+ +           +A EYL++V+LYP       VR+H+ K LH     HTDLR +L
Sbjct:   40 YYRSIGSPKFIVAPMVDQSELPYRMLTRKYKAQLCYTPMFHGRMFSESEGYRKEFFC----PHPEDRPLSVQFCANDPQVLLKAARYVENDCDAVDINFGCPQGIARKGKYGSFLLEKTEIIRSLVTTLAQNLKVPVTCKIRCLPNEEETMKLAKMIEECGCAMLVVHGRTREHNKQRTGPANWQIIKKIKQSLRIPVIANGGMATFEDCMACLEYTGCDGVMSSESILEYPALFDPQ-PSLYNLD---------EIAFEYLEMVKLYPGEADLKNVRSHIHKFLHTGFKQHTDLRDKL 324          
BLAST of jgi.p|Trimin1|150292 vs. uniprot
Match: A0A0P1B8E6_PLAHL (tRNA-dihydrouridine synthase n=1 Tax=Plasmopara halstedii TaxID=4781 RepID=A0A0P1B8E6_PLAHL)

HSP 1 Score: 271 bits (692), Expect = 8.000e-86
Identity = 150/301 (49.83%), Postives = 197/301 (65.45%), Query Frame = 1
Query:    1 FYKAIGSPTYVAAPMVEQSEKAFRLLCRRHGCDLAYTQMLHAQQFSMLKAAKFRCVCCGGEDPQEDRPLIAQFCGNDPELLVKAARYVEHQVEACDLNLGCPQQIAKKGNYGAYLLPQGDLCERLIDAMASQLACPVTVKIRCLSTVEETVKLALRLEGAGVQLITVHGRTVRSAKTDNGPADWSIIREVKAALRIPVVANGGIETFADAERCLALTGADAIMSSEALLEDPALFDRSL--PGLHEVSGAALAQRQLALAGEYLQLVQLYPPAIGAGPVRAHLFKMLHRLLGCHTDLRGRL 897
            FY+AIGSP  + APMV+QSE AFR+LCR+ G D  YT MLH++ F  +++A++R      E   EDRPLI QFCGNDP+ ++KAA+ VE+  +A DLNLGCPQ IA+KG+YG++L+   D  + +I+ ++++L  PVTVKIR      ET++    L+ AG  L+TVHGRT    KT     DW IIR +K  L IPV+ANGGIET++D  RCL  TG D +MSSEA+LE+PALF  S     +H           + LA  YL+ V LYPPA     VRAHLFK+L + L  H+DLR  L
Sbjct:   19 FYRAIGSPKRIVAPMVDQSELAFRMLCRKLGADCCYTPMLHSRLF--VESAEYREKMF--EHHIEDRPLIVQFCGNDPKTVLKAAKLVENYCDAVDLNLGCPQGIARKGHYGSFLMHDKDTVQAIIETLSAELCIPVTVKIRVFPDNNETLEFVDMLQKAGCDLLTVHGRTKEMNKTSVREVDWDIIRRIKERLTIPVIANGGIETYSDIARCLEATGCDGVMSSEAILENPALFADSYNKEDVHPFF--------VQLARRYLECVTLYPPASDK-IVRAHLFKILFQDLCVHSDLREAL 306          
BLAST of jgi.p|Trimin1|150292 vs. uniprot
Match: A0A484EGW3_BRELC (tRNA-dihydrouridine synthase n=1 Tax=Bremia lactucae TaxID=4779 RepID=A0A484EGW3_BRELC)

HSP 1 Score: 269 bits (687), Expect = 3.250e-85
Identity = 146/301 (48.50%), Postives = 199/301 (66.11%), Query Frame = 1
Query:    1 FYKAIGSPTYVAAPMVEQSEKAFRLLCRRHGCDLAYTQMLHAQQFSMLKAAKFRCVCCGGEDPQEDRPLIAQFCGNDPELLVKAARYVEHQVEACDLNLGCPQQIAKKGNYGAYLLPQGDLCERLIDAMASQLACPVTVKIRCLSTVEETVKLALRLEGAGVQLITVHGRTVRSAKTDNGPADWSIIREVKAALRIPVVANGGIETFADAERCLALTGADAIMSSEALLEDPALFD--RSLPGLHEVSGAALAQRQLALAGEYLQLVQLYPPAIGAGPVRAHLFKMLHRLLGCHTDLRGRL 897
            FY+AIGSP  + APMV+QSE AFR+LCR+ G D  YT MLH++ F+  + A++R      E   +DRPL+ QFCGNDP+ +++AA+ VE+  +A DLNLGCPQ IA+KG+YG++L+   DL + +++ ++++L   VTVKIR  S   ET++ A  L+ AG  ++TVHGRT    KT     +W IIR +K  L IPV+ANGGIET  D  RC+  TG D +MSSE LLE+PALF   R+ PG++           + LA +YL   +LYPPA G   VRAHLFK+L + L  H+DLR  L
Sbjct:    9 FYRAIGSPKRIVAPMVDQSELAFRMLCRKFGADCCYTPMLHSRLFA--ENAEYREKMF--ERHMQDRPLVVQFCGNDPKTVLQAAKMVENHCDAVDLNLGCPQGIARKGHYGSFLMHDKDLVKSIVETLSAELNIAVTVKIRVFSDDNETLEFAAMLQKAGCDMLTVHGRTKEMNKTAVREVNWDIIRRIKEQLTIPVIANGGIETHEDIARCVNATGCDGVMSSEGLLENPALFATARNAPGVNTSF--------MELARQYLTYAKLYPPATGK-IVRAHLFKILFQDLCVHSDLRDAL 296          
BLAST of jgi.p|Trimin1|150292 vs. uniprot
Match: A0A5D6XL89_9STRA (tRNA-dihydrouridine synthase n=1 Tax=Pythium brassicum TaxID=1485010 RepID=A0A5D6XL89_9STRA)

HSP 1 Score: 268 bits (684), Expect = 1.040e-84
Identity = 145/299 (48.49%), Postives = 191/299 (63.88%), Query Frame = 1
Query:    1 FYKAIGSPTYVAAPMVEQSEKAFRLLCRRHGCDLAYTQMLHAQQFSMLKAAKFRCVCCGGEDPQEDRPLIAQFCGNDPELLVKAARYVEHQVEACDLNLGCPQQIAKKGNYGAYLLPQGDLCERLIDAMASQLACPVTVKIRCLSTVEETVKLALRLEGAGVQLITVHGRTVRSAKTDNGPADWSIIREVKAALRIPVVANGGIETFADAERCLALTGADAIMSSEALLEDPALFDRSLPGLHEVSGAALAQRQLALAGEYLQLVQLYPPAIGAGPVRAHLFKMLHRLLGCHTDLRGRL 897
            F+ AIG+P  + APMV+QSE AFR+LCRRHG +L YT M H++ F+   A + +      E    DRPLI QFCGNDP+ ++ AA+ VE   +A DLNLGCPQ IA+KG YG++L+        +++ +++ LA PVTVKIR     +ET++    L+ AG  L+ VHGRT    KT    ADW I++ +KA L IPVVANGGIE   D +RCL  T AD +MSSEA+LE+PALF R        +  +L+   +ALA EYL L + +PPA     VRAHLFK+L + L  HTDLR  L
Sbjct:    8 FFNAIGAPKRIVAPMVDQSELAFRMLCRRHGAELCYTPMFHSRLFAESPAYREKMF----EQHVHDRPLIVQFCGNDPQTMLAAAKLVEGHCDAVDLNLGCPQGIARKGRYGSFLMQDKAAVRAIVETLSAHLAVPVTVKIRVFPDEQETLEFCDMLQAAGCDLLVVHGRTKEMNKTAVRAADWGIVQRIKARLTIPVVANGGIEAPGDVQRCLDATHADGVMSSEAILENPALFSRRDRTTTATATPSLSY--VALATEYLALAEDFPPASDK-IVRAHLFKLLFQDLRVHTDLRDAL 299          
The following BLAST results are available for this feature:
BLAST of jgi.p|Trimin1|150292 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
A0A836CKE0_9STRA1.980e-218100.00tRNA-dihydrouridine synthase (Fragment) n=1 Tax=Tr... [more]
D7G7Q4_ECTSI3.120e-12162.33Dihydrouridine synthase n=1 Tax=Ectocarpus silicul... [more]
A0A6H5JD10_9PHAE2.780e-10756.46Reverse transcriptase domain-containing protein n=... [more]
A0A7S3UVI5_HETAK3.410e-9655.03Hypothetical protein n=2 Tax=Heterosigma akashiwo ... [more]
A0A7S2C8F7_9STRA4.800e-9449.85Hypothetical protein n=3 Tax=Dictyocha speculum Ta... [more]
W7TKF8_9STRA5.050e-8749.04Dihydrouridine synthase n=2 Tax=Nannochloropsis ga... [more]
J9IYU7_9SPIT6.230e-8646.49tRNA-dihydrouridine synthase n=1 Tax=Oxytricha tri... [more]
A0A0P1B8E6_PLAHL8.000e-8649.83tRNA-dihydrouridine synthase n=1 Tax=Plasmopara ha... [more]
A0A484EGW3_BRELC3.250e-8548.50tRNA-dihydrouridine synthase n=1 Tax=Bremia lactuc... [more]
A0A5D6XL89_9STRA1.040e-8448.49tRNA-dihydrouridine synthase n=1 Tax=Pythium brass... [more]

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
Contig_143contigContig_143:288612..291501 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Tribonema minus UTEX_B_31562021-06-17
Properties
Property NameValue
ProteomeIdTrimin1|150292|gw1.143.71.1
BRITEko00000,ko01000,ko03016
KEGG koko:K05542
EC1.3.1.88
DescriptiontRNA dihydrouridine synthase activity
COG categoryJ
Max annot lvl2759|Eukaryota
EggNOG OGsCOG0042@1|root,KOG2335@2759|Eukaryota
Evalue5.11e-122
Seed ortholog2880.D7G7Q4
Hectar predicted targeting categoryother localisation
Ec32 ortholog descriptionAldolase-type TIM barrel
Ec32 orthologEc-06_000770.1
TranscriptId150614
TrackFilteredModels1
ProteinId150292
Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesTypePosition
jgi.p|Trimin1|150292gene_14340Tribonema minus UTEX_B_3156 geneContig_143 288612..291501 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
jgi.p|Trimin1|150292Trimin1|150292|gw1.143.71.1Tribonema minus UTEX_B_3156 polypeptideContig_143 288612..291501 +


The following exon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
exon_14340_1exon_14340_1Tribonema minus UTEX_B_3156 exonContig_143 288612..288689 +
exon_14340_2exon_14340_2Tribonema minus UTEX_B_3156 exonContig_143 288802..288900 +
exon_14340_3exon_14340_3Tribonema minus UTEX_B_3156 exonContig_143 289061..289094 +
exon_14340_4exon_14340_4Tribonema minus UTEX_B_3156 exonContig_143 289491..289591 +
exon_14340_5exon_14340_5Tribonema minus UTEX_B_3156 exonContig_143 290193..290447 +
exon_14340_6exon_14340_6Tribonema minus UTEX_B_3156 exonContig_143 291172..291501 +


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
CDS_14340CDS_14340Tribonema minus UTEX_B_3156 CDSContig_143 288612..288689 +


Sequences
The following sequences are available for this feature:

spliced messenger RNA

>mRNA_14340 ID=mRNA_14340|Name=jgi.p|Trimin1|150292|organism=Tribonema minus UTEX_B_3156 |type=mRNA|length=897bp|location=Sequence derived from alignment at Contig_143:288612..291501+ (Tribonema minus UTEX_B_3156 )|Notes=Excludes all bases but those of type(s): exon.  
TTCTACAAAGCCATCGGGTCTCCAACGTACGTGGCTGCACCGATGGTGGA
GCAGAGCGAGAAGGCCTTTCGATTATTGTGTCGGCGACATGGATGCGACT
TGGCTTATACTCAGATGCTACATGCTCAGCAGTTCAGCATGCTCAAGGCA
GCAAAGTTCAGGTGTGTGTGTTGTGGCGGAGAGGACCCACAGGAGGATCG
CCCGTTGATCGCACAGTTTTGTGGAAACGACCCGGAGCTACTGGTGAAAG
CGGCTAGGTATGTGGAGCACCAGGTGGAGGCCTGTGACCTCAACTTGGGA
TGTCCGCAGCAGATCGCCAAGAAGGGCAACTACGGCGCGTACCTGCTACC
TCAGGGCGACCTCTGCGAGCGGCTGATTGATGCCATGGCATCGCAGCTCG
CATGCCCTGTAACTGTCAAGATCCGGTGCCTGAGCACCGTGGAGGAGACG
GTGAAGCTGGCGCTGCGACTGGAGGGCGCGGGGGTGCAGCTGATCACTGT
GCACGGGCGCACCGTGAGGTCTGCCAAGACGGACAACGGGCCCGCTGACT
GGTCCATCATCAGAGAGGTCAAGGCCGCGCTGCGCATACCCGTGGTCGCC
AACGGCGGCATCGAGACCTTCGCTGATGCTGAGCGCTGCCTCGCGCTCAC
AGGCGCGGACGCCATCATGTCCAGCGAAGCCCTGCTAGAAGACCCCGCCC
TCTTCGATCGTTCGTTGCCAGGGCTGCACGAAGTGTCCGGCGCAGCGCTG
GCGCAGCGGCAGCTGGCGCTGGCCGGCGAGTACCTGCAGCTCGTGCAGCT
GTACCCCCCAGCCATAGGGGCGGGGCCGGTGCGCGCGCACCTGTTCAAGA
TGCTGCACCGCCTGCTCGGCTGCCACACGGATCTGCGCGGCAGGCTC
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protein sequence of jgi.p|Trimin1|150292

>Trimin1|150292|gw1.143.71.1 ID=Trimin1|150292|gw1.143.71.1|Name=jgi.p|Trimin1|150292|organism=Tribonema minus UTEX_B_3156 |type=polypeptide|length=299bp
FYKAIGSPTYVAAPMVEQSEKAFRLLCRRHGCDLAYTQMLHAQQFSMLKA
AKFRCVCCGGEDPQEDRPLIAQFCGNDPELLVKAARYVEHQVEACDLNLG
CPQQIAKKGNYGAYLLPQGDLCERLIDAMASQLACPVTVKIRCLSTVEET
VKLALRLEGAGVQLITVHGRTVRSAKTDNGPADWSIIREVKAALRIPVVA
NGGIETFADAERCLALTGADAIMSSEALLEDPALFDRSLPGLHEVSGAAL
AQRQLALAGEYLQLVQLYPPAIGAGPVRAHLFKMLHRLLGCHTDLRGRL
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mRNA from alignment at Contig_143:288612..291501+

Legend: polypeptideexonCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_14340 ID=mRNA_14340|Name=jgi.p|Trimin1|150292|organism=Tribonema minus UTEX_B_3156 |type=mRNA|length=2890bp|location=Sequence derived from alignment at Contig_143:288612..291501+ (Tribonema minus UTEX_B_3156 )
TTCTACAAAGCCATCGGGTCTCCAACGTACGTGGCTGCACCGATGGTGGA GCAGAGCGAGAAGGCCTTTCGATTATTGGTGAGTTGCAAGCTCAAAGACG TTGACTATTGGCCGTGACTGCATTCATGGCTGATTCACTTATTACTGCTG TTGTGCTTGCTGCTGCTGTCTTGCCGCTCCTGCTTTCCAGTGTCGGCGAC ATGGATGCGACTTGGCTTATACTCAGATGCTACATGCTCAGCAGTTCAGC ATGCTCAAGGCAGCAAAGTTCAGGTGTGTGTGTTGTGGCGTTTGGTGTAT GTAGGTAGCAGCAGCAGTGCAGCATGTTCAAACCGTTTGCTACCATGAAA TGTCTTCTTGCCTGCCCTGTATGCTTTGCAGGGTTCTCATTTAGCTCTGC TGTGCCCCCCTGCAGACATCAGCACTTTGATGGTGACCAGGTGTTGGAGG GAGAGGACCCACAGGAGGATCGCCCGTTGATCGGTGAGCTTTTGAGCTTC CTACATGTGCCCTGAGACATGGCGTGACCACCGCTCTGCTCACCATGATG TGTCTTCTCCACTTGTTGAAGCAGTTCAGGCAAGAAGCAGCATCTTCTGA GTTTGTGTATTGGCGTCATTGCAAATTTACCCCTCTACTGGTCTGATGCG GACGCAACGGCAGTGTTCATTGTGTTCAAATAGACTCTGCCGCTGCAGAT GTCACTGTGATTGACAAGCTGCTTCGCCCTTCAGCTACGCCAGCCAATAA AAGCCAAGCCATCATCTGTACATGATTGCCTCAAGCGTGTGCCAATGCAG CAACAGCTCATAGCATCTTCACCCCATAGCGTATTCAGTTCATGAGACAG TTCCGCATGATTCTGCCGCCGCCACGCAGCACAGTTTTGTGGAAACGACC CGGAGCTACTGGTGAAAGCGGCTAGGTATGTGGAGCACCAGGTGGAGGCC TGTGACCTCAACTTGGGATGTCCGCAGCAGGTGAGCATAGTAACATATGG GAGTTGGAACATGCGACATCAGTTGGTCACAGGCACGATGGCGGAATTAC GATCTGATCAACGCGGCAGTGAAATGCACAGACTCTTGCTTGATGAACAG CTTCAAGACCCCCCCGTGTGACCTCAACTTGGGATGTCCGCAGCAGGTGA GCCGCGGCAGGCTCAATTCACTAGCACGAAGTAATACTACGCTAATGTAT ACACGTGCTTCTTGTTGACACGTATTTCTTGTTGAAGTATGTACATGTCA GTACATGCTGTTTCTTCACGAAGGAGTTAGTACACCCATACAGACTCACA TGCATACCAGTAAGTATGTTCCCCCCCCCCTCCCCTCCCCCGGTGGCAGG CAGTATGTAGGTCACTCCTGCCTGCAACACGCTTGCTGTCGAATGACACA TACATGGCGGTCCCCCCAAGCATTACCGCTGACGCTATGTATACCTACCC ATGAAGCACGACTACGATGCACTTTGCAGAGACTGACTCCCCCGCTGGCT CTCCCTCGTTTTCACTCGCATGGCCAAGTGCTACACACTCTGAATCTCCG CACCACACCTGTGCCCGCCGCCTGCGCACAGATCGCCAAGAAGGGCAACT ACGGCGCGTACCTGCTACCTCAGGGCGACCTCTGCGAGCGGCTGATTGAT GCCATGGCATCGCAGCTCGCATGCCCTGTAACTGTCAAGATCCGGTGCCT GAGCACCGTGGAGGAGACGGTGAAGCTGGCGCTGCGACTGGAGGGCGCGG GGGTGCAGCTGATCACTGTGCACGGGCGCACCGTGAGGTCTGCCAAGACG GACAACGGGCCCGCTGACTGGTCCATCATCAGAGAGGTGGGGCGGCGTGT TGTGCGGGTCGTGGTGATGGTGTGCCGCTACCCATACTTAGGTTGTGTTG AGCCAACGGATGCACAGAAGGAGTCAATGCTGAATTGTTGGGTCACTGAG ACTGACTCATGGTCAAAGCAAACTGGTGGAGAGCCTGGCATGTCCTTTTG CTCAAGTTTTTGCCACATGGCAAGCCATTGTCACATACCAGTCAGCCTCT CAGCCTGTCAGGCAGTACTGCATTGTGTCGAGGCATGGGACATGGTACCT GCTGAATGCGGGCAACACTACTTGACTGACATGAAGGCCCCAATTGCAAG TGCACCATGTCCACTGGTGGTCTCATGCAAGATCGCGTATAGCGTCAAAT TGGAGCAGCAAGTGTAGAGCTAGGTGTGTTGTCAGTTTTTGTATCGCACA TGTGTCGTGGTGCTAGGATCTGCAGAAATTGGCAGATGTACATCTGATTA TACACAAGCATACTGCAGCAGCACTAATATTCTAGTGGCTCCTGCTGATC CACAGCACCAAATGTGTGAATGGTGCAACTTTTTCACATGCGCACACCGC CTTGAGCAATAAGCGCAAGACTCTACAGCAGTATAGCACTTGTGTGACGT CACCACTGCCAACAAAGCTCCATCAAGGAAAGCATTGCGCACATGCACAA TGTGCAACCCTAATCCCATCCCTGCTGCTGCTGCTGCTGCTGCTGCTGCT GCTCTGACAGGTCAAGGCCGCGCTGCGCATACCCGTGGTCGCCAACGGCG GCATCGAGACCTTCGCTGATGCTGAGCGCTGCCTCGCGCTCACAGGCGCG GACGCCATCATGTCCAGCGAAGCCCTGCTAGAAGACCCCGCCCTCTTCGA TCGTTCGTTGCCAGGGCTGCACGAAGTGTCCGGCGCAGCGCTGGCGCAGC GGCAGCTGGCGCTGGCCGGCGAGTACCTGCAGCTCGTGCAGCTGTACCCC CCAGCCATAGGGGCGGGGCCGGTGCGCGCGCACCTGTTCAAGATGCTGCA CCGCCTGCTCGGCTGCCACACGGATCTGCGCGGCAGGCTC
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Coding sequence (CDS) from alignment at Contig_143:288612..291501+

>mRNA_14340 ID=mRNA_14340|Name=jgi.p|Trimin1|150292|organism=Tribonema minus UTEX_B_3156 |type=CDS|length=897bp|location=Sequence derived from alignment at Contig_143:288612..291501+ (Tribonema minus UTEX_B_3156 )
TTCTACAAAGCCATCGGGTCTCCAACGTACGTGGCTGCACCGATGGTGGA
GCAGAGCGAGAAGGCCTTTCGATTATTGTGTCGGCGACATGGATGCGACT
TGGCTTATACTCAGATGCTACATGCTCAGCAGTTCAGCATGCTCAAGGCA
GCAAAGTTCAGGTGTGTGTGTTGTGGCGGAGAGGACCCACAGGAGGATCG
CCCGTTGATCGCACAGTTTTGTGGAAACGACCCGGAGCTACTGGTGAAAG
CGGCTAGGTATGTGGAGCACCAGGTGGAGGCCTGTGACCTCAACTTGGGA
TGTCCGCAGCAGATCGCCAAGAAGGGCAACTACGGCGCGTACCTGCTACC
TCAGGGCGACCTCTGCGAGCGGCTGATTGATGCCATGGCATCGCAGCTCG
CATGCCCTGTAACTGTCAAGATCCGGTGCCTGAGCACCGTGGAGGAGACG
GTGAAGCTGGCGCTGCGACTGGAGGGCGCGGGGGTGCAGCTGATCACTGT
GCACGGGCGCACCGTGAGGTCTGCCAAGACGGACAACGGGCCCGCTGACT
GGTCCATCATCAGAGAGGTCAAGGCCGCGCTGCGCATACCCGTGGTCGCC
AACGGCGGCATCGAGACCTTCGCTGATGCTGAGCGCTGCCTCGCGCTCAC
AGGCGCGGACGCCATCATGTCCAGCGAAGCCCTGCTAGAAGACCCCGCCC
TCTTCGATCGTTCGTTGCCAGGGCTGCACGAAGTGTCCGGCGCAGCGCTG
GCGCAGCGGCAGCTGGCGCTGGCCGGCGAGTACCTGCAGCTCGTGCAGCT
GTACCCCCCAGCCATAGGGGCGGGGCCGGTGCGCGCGCACCTGTTCAAGA
TGCTGCACCGCCTGCTCGGCTGCCACACGGATCTGCGCGGCAGGCTC
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