mRNA_14295 (mRNA) Tribonema minus UTEX_B_3156
Overview
Homology
BLAST of jgi.p|Trimin1|149175 vs. uniprot
Match: A0A835Z8H4_9STRA (START domain-containing protein (Fragment) n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A835Z8H4_9STRA) HSP 1 Score: 346 bits (888), Expect = 7.690e-121 Identity = 167/167 (100.00%), Postives = 167/167 (100.00%), Query Frame = 1 Query: 1 RYFDELEAARRMAEAIMPDPGWVEVHQKDGVTVWKKWLPKGVYGSQYPCVKATAVVEVNAEAFVDLILDSSRVLEYNRYSRGRDDVARLGPHTKIVWNRTQPPLTGKVHDFCTLMHVDRRDGGGATVTTRATDHERAPRLRGAVRSEIVLGVTVVEPLAPGRATVTT 501 RYFDELEAARRMAEAIMPDPGWVEVHQKDGVTVWKKWLPKGVYGSQYPCVKATAVVEVNAEAFVDLILDSSRVLEYNRYSRGRDDVARLGPHTKIVWNRTQPPLTGKVHDFCTLMHVDRRDGGGATVTTRATDHERAPRLRGAVRSEIVLGVTVVEPLAPGRATVTT Sbjct: 1 RYFDELEAARRMAEAIMPDPGWVEVHQKDGVTVWKKWLPKGVYGSQYPCVKATAVVEVNAEAFVDLILDSSRVLEYNRYSRGRDDVARLGPHTKIVWNRTQPPLTGKVHDFCTLMHVDRRDGGGATVTTRATDHERAPRLRGAVRSEIVLGVTVVEPLAPGRATVTT 167
BLAST of jgi.p|Trimin1|149175 vs. uniprot
Match: D7FK14_ECTSI (Uncharacterized protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7FK14_ECTSI) HSP 1 Score: 193 bits (490), Expect = 2.140e-59 Identity = 89/159 (55.97%), Postives = 115/159 (72.33%), Query Frame = 1 Query: 1 RYFDELEAARRMAEAIMPDPGWVEVHQKDGVTVWKKWLPKGVYGSQYPCVKATAVVEVNAEAFVDLILDSSRVLEYNRYSRGRDDVARLGPHTKIVWNRTQPPLTGKVHDFCTLMHVDRRDG--GGATVTTRATDHERAPRLRGAVRSEIVLGVTVVEP 471 +Y EL+ A+ AE + PGW EV + GVTVWKK+ PK YG +YPCVKA ++E +A + +I+DS+RVLEYNRYS+GR D+ LGPHTKIVWN+ QPPL+ K+HDFCTLMH+ D G + TRAT+H +AP L G VRSEI+LGVT++ P Sbjct: 38 KYLAELQLAQESAERALGTPGWEEVAHRGGVTVWKKYFPKDEYGYKYPCVKARGIIEGSAAEVMSMIVDSTRVLEYNRYSKGRTDIEHLGPHTKIVWNKAQPPLSKKLHDFCTLMHMQPLDDEEGSFMLITRATEHPKAPLLDGHVRSEILLGVTILRP 196
BLAST of jgi.p|Trimin1|149175 vs. uniprot
Match: A0A4D9DEU8_9STRA (START domain-containing protein n=2 Tax=Monodopsidaceae TaxID=425072 RepID=A0A4D9DEU8_9STRA) HSP 1 Score: 168 bits (425), Expect = 3.450e-47 Identity = 82/171 (47.95%), Postives = 108/171 (63.16%), Query Frame = 1 Query: 1 RYFDELEAARRMAEAIMPDPG--WVEVHQKDGVTVWKKWLPKGVYGSQYPCVKATAVVEVNAEAFVDLILDSSRVLEYNRYSRGRDDVARLGPHTKIVWNRTQPPLTGKVHDFCTLMHVDRRDGGGATVTTRATDHERAPRLRGAVRSEIVLGVTVVEP--LAPGRATVTT 501 RY L + + D G W V +K+ +W++ L + YG +YPC+K + ++ + EA +DL++DS RV EYN+YS+GRDDVAR+GPHTKIVWNRT PPL K H+FCT+MHV RR G + T+ TDH PR RSEI+LGVT V P P RA +TT Sbjct: 203 RYLSLLRSLEEEGHQALGDEGGGWHPVSEKEDTKIWRRNLAEDAYGREYPCLKLSTMLHASPEAVMDLLVDSERVGEYNKYSKGRDDVARVGPHTKIVWNRTLPPLQKKAHEFCTIMHVVRRPDGSQVMLTKFTDHPEVPRSSRFARSEIILGVTEVRPHPTDPNRAHLTT 373
BLAST of jgi.p|Trimin1|149175 vs. uniprot
Match: A0A7S2Y106_9STRA (Hypothetical protein (Fragment) n=1 Tax=Fibrocapsa japonica TaxID=94617 RepID=A0A7S2Y106_9STRA) HSP 1 Score: 138 bits (347), Expect = 2.410e-36 Identity = 64/148 (43.24%), Postives = 93/148 (62.84%), Query Frame = 1 Query: 46 IMPDPGW-VEVHQKDGVTVWKKWLPKGVYGSQYPCVKATAVVEVNAEAFVDLILDSSRVLEYNRYSRGRDDVARLGPHTKIVWNRTQPPLTGKVHDFCTLMHVDRRDGGGA-TVTTRATDHERAPRLRGAVRSEIVLGVTVVEPLAPG 483 + P W + + ++DG VWK + PK G+ YP +K+ +V A V++++DS RV EYNR+S+GR DV +G TK+VWNRT PP+T K HDFCTLMHV + G+ + T+A H + P+ +G +RS IV G +P+ PG Sbjct: 218 LNPSYNWKLVIEKEDGTKVWKAYAPKDADGADYPIIKSHGIVNAPAADLVEMMIDSERVQEYNRFSKGRTDVQTMGEDTKVVWNRTWPPMTPKPHDFCTLMHVTKNPKDGSYAMLTKAIQHPKVPKTKGFIRSRIVCGAMFFKPV-PG 364
BLAST of jgi.p|Trimin1|149175 vs. uniprot
Match: A0A7S2DLP4_9STRA (Hypothetical protein n=1 Tax=Dictyocha speculum TaxID=35687 RepID=A0A7S2DLP4_9STRA) HSP 1 Score: 119 bits (299), Expect = 3.220e-31 Identity = 59/130 (45.38%), Postives = 80/130 (61.54%), Query Frame = 1 Query: 109 WLPKGVYGSQYPCVKATAVVEVNAEAFVDLILDSSRVLEYNRYSRGRDDVARLGPHTKIVWNRTQPPLTGKVHDFCTLMHVDRRDGGGATVTTRATDHERAPRLRGAVRSEIVLGVTVVEPLAPGRATVT 498 W PK YGS+ VK+ ++V + D+I DSSR EYN+YS GR D LG TKIVWNRT PP T + HDFCTLMH + G + T AT+H + + +RSEI+LGV ++ P++ G+ +T Sbjct: 1 WPPKDTYGSENSFVKSRSLVSASPGDIFDMIYDSSRTKEYNKYSVGRTDAVELGKTTKIVWNRTAPPGTKRPHDFCTLMHGETFTNGTQLLMTCATEHPKVKPSKEYLRSEILLGVNLMVPISEGQTELT 130
BLAST of jgi.p|Trimin1|149175 vs. uniprot
Match: A0A6U6KS53_9STRA (Hypothetical protein n=2 Tax=Odontella aurita TaxID=265563 RepID=A0A6U6KS53_9STRA) HSP 1 Score: 97.1 bits (240), Expect = 1.770e-20 Identity = 62/142 (43.66%), Postives = 82/142 (57.75%), Query Frame = 1 Query: 82 KDGVTVWKKWLPKGVYGSQYPCVKATAVVEVNAEAFVDLILDSSRVLEYNRYSRGRDDVARL-------GPH----TKIVWNRTQPPLTGKVHDFCTLMHVDR-RDGGGATVTTRA-TDHERAPRLRGAV-RSEIVLGVTVV 465 ++ V VW G+YGS P V+A VV + A VDL+LD+SRV EYN+ S GRDDV L GP TK+V + ++PPL K +F TLMHV + DG G + +RA T E A G V RSEI++GV ++ Sbjct: 281 ENDVLVWSGNFTHGLYGSDLPTVRAEGVVNMAPSALVDLLLDNSRVYEYNKMSLGRDDVLVLQDDLENDGPFGQSITKVVRSASKPPLVRKSLEFVTLMHVRKLEDGNGYLIVSRAVTQAEEAINSDGKVMRSEILMGVNII 422
BLAST of jgi.p|Trimin1|149175 vs. uniprot
Match: A0A7R9VKG4_9STRA (Hypothetical protein n=1 Tax=Pseudictyota dubia TaxID=2749911 RepID=A0A7R9VKG4_9STRA) HSP 1 Score: 88.6 bits (218), Expect = 3.500e-18 Identity = 63/168 (37.50%), Postives = 88/168 (52.38%), Query Frame = 1 Query: 16 LEAARRMAEAIMPDPGWVEVHQKDG-----VTVWKKWLPKGVYGSQYPCVKATAVVEVNAEAFVDLILDSSRVLEYNRYSRGRDDVARL-------GPH----TKIVWNRTQPPLTGKVHDFCTLMHVDR-RDGGGATVTTRA-TDHERAPRLRGAV-RSEIVLGVTV 462 L ++ ++A+ G V V + V VW G+YGS P V+A V+ + V++++DSSRV EYN+ S GRDDV L GP TK+V + ++PPL K +F TLMH + DG G + +RA T E A G V RSEI++GV V Sbjct: 60 LARSQAWSDAVWQRSGVVNVPPRGSADENEVLVWSGNFTHGLYGSDLPTVRAEGVINMAPIKIVEMLMDSSRVHEYNKMSLGRDDVLVLQDDLENDGPFGQSITKVVRSASKPPLVRKPIEFVTLMHARKLEDGNGYLIVSRAVTQAEEAINSDGKVMRSEILMGVNV 227
BLAST of jgi.p|Trimin1|149175 vs. uniprot
Match: A0A7S1VKR8_9STRA (Hypothetical protein n=1 Tax=Grammatophora oceanica TaxID=210454 RepID=A0A7S1VKR8_9STRA) HSP 1 Score: 85.9 bits (211), Expect = 3.650e-17 Identity = 49/144 (34.03%), Postives = 75/144 (52.08%), Query Frame = 1 Query: 79 QKDGVTVWKKWLPKGVYGSQYPCVKATAVVEVNAEAFVDLILDSSRVLEYNRYSRGRDDVARL-------GPH---TKIVWNRTQPPLTGKVHDFCTLMHVDRRDGGGATVTTRATDHERAPRLRGA--VRSEIVLGVTVVEPL 474 + + V VW G YGS P ++A +V ++ A VD+++DS+RV EYN S GR D+ L GP TKIV + TQPP+ K F T++H + G + H AP + + +RSEI++G+ V+ + Sbjct: 82 EPETVLVWSGNFMHGYYGSDLPAIRAAGLVNMSPGALVDMLMDSTRVKEYNTMSLGRKDMLVLQEDMDPDGPFRGITKIVQSETQPPMIRKTVQFTTILHARKLPNDGGYLLISRAVHHGAPSILDSNIIRSEILMGLNVIRSI 225
BLAST of jgi.p|Trimin1|149175 vs. uniprot
Match: A0A7S1Y726_9STRA (Hypothetical protein n=1 Tax=Grammatophora oceanica TaxID=210454 RepID=A0A7S1Y726_9STRA) HSP 1 Score: 84.7 bits (208), Expect = 1.690e-16 Identity = 51/123 (41.46%), Postives = 75/123 (60.98%), Query Frame = 1 Query: 124 VYGSQYPCVKATAVVEVNAEAFVDLILDSSRVLEYNRYSRGRDDVARL-GPH--TKIVWNRTQPPLTGKVHDFCTLMHVDRRDGGGATVTTRAT----DHERAPRLRGAVRSEIVLGVTVVEP 471 +YGS P VK+ +++++ E DL+LDSS+V YN+YS GR DV R+ GP TKIV N T+PP++ K T++H + + G V +RA D + + G RSEI+LGV ++EP Sbjct: 149 LYGSNLPVVKSESIIDMTPEQMSDLLLDSSKVKTYNKYSVGRTDVRRIEGPTGTTKIVRNITKPPVSQKKVMVTTMLHSRQLENGSYIVVSRAVPPVADEDTSNEEYG--RSEILLGVNLLEP 269
BLAST of jgi.p|Trimin1|149175 vs. uniprot
Match: B7G311_PHATC (Predicted protein n=1 Tax=Phaeodactylum tricornutum (strain CCAP 1055/1) TaxID=556484 RepID=B7G311_PHATC) HSP 1 Score: 84.3 bits (207), Expect = 4.670e-16 Identity = 50/132 (37.88%), Postives = 74/132 (56.06%), Query Frame = 1 Query: 91 VTVWKKWLPKGVYGSQYPCVKATAVVEVNAEAFVDLILDSSRVLEYNRYSRGRDDV-ARLGPHTKIVWNRTQPPLTGKVHDFCTLMHVDRRDGGGATVTTRATD----HERAPRLRGAVRSEIVLGVTVVEP 471 + W + YGS P +K +VV + VDL++DSSRV YN +S GR+D+ ++KIV NRTQPPL KV TL+H + D G + +RA H+ + + A +S+I+LGV ++EP Sbjct: 232 IQTWTGKSKRDGYGSNLPWIKTRSVVPMTPVEMVDLLMDSSRVTTYNPWSIGREDLWVSEDNNSKIVRNRTQPPLGSKVMVATTLLHAQQLDDGAWMLVSRAVGGDVYHDSSDK--NASKSDILLGVNLLEP 361 The following BLAST results are available for this feature:
BLAST of jgi.p|Trimin1|149175 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90) Total hits: 22
Pagesback to topAlignments
The following features are aligned
Analyses
This mRNA is derived from or has results from the following analyses
Properties
Relationships
This mRNA is a part of the following gene feature(s):
The following exon feature(s) are a part of this mRNA:
The following CDS feature(s) are a part of this mRNA:
The following polypeptide feature(s) derives from this mRNA:
Sequences
The following sequences are available for this feature:
spliced messenger RNA >mRNA_14295 ID=mRNA_14295|Name=jgi.p|Trimin1|149175|organism=Tribonema minus UTEX_B_3156 |type=mRNA|length=501bp|location=Sequence derived from alignment at Contig_178:272578..274265+ (Tribonema minus UTEX_B_3156 )|Notes=Excludes all bases but those of type(s): exon. CGCTACTTTGACGAGCTGGAGGCAGCTCGGAGGATGGCGGAGGCGATAATback to top protein sequence of jgi.p|Trimin1|149175 >Trimin1|149175|gw1.178.56.1 ID=Trimin1|149175|gw1.178.56.1|Name=jgi.p|Trimin1|149175|organism=Tribonema minus UTEX_B_3156 |type=polypeptide|length=167bp RYFDELEAARRMAEAIMPDPGWVEVHQKDGVTVWKKWLPKGVYGSQYPCVback to top mRNA from alignment at Contig_178:272578..274265+ Legend: exonpolypeptideCDS Hold the cursor over a type above to highlight its positions in the sequence below.>mRNA_14295 ID=mRNA_14295|Name=jgi.p|Trimin1|149175|organism=Tribonema minus UTEX_B_3156 |type=mRNA|length=1688bp|location=Sequence derived from alignment at Contig_178:272578..274265+ (Tribonema minus UTEX_B_3156 )back to top Coding sequence (CDS) from alignment at Contig_178:272578..274265+ >mRNA_14295 ID=mRNA_14295|Name=jgi.p|Trimin1|149175|organism=Tribonema minus UTEX_B_3156 |type=CDS|length=501bp|location=Sequence derived from alignment at Contig_178:272578..274265+ (Tribonema minus UTEX_B_3156 )back to top |