mRNA_14160 (mRNA) Tribonema minus UTEX_B_3156

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
Namejgi.p|Trimin1|14021
Unique NamemRNA_14160
TypemRNA
OrganismTribonema minus UTEX_B_3156 (Tribonema minus UTEX_B_3156 )
Homology
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BLAST of jgi.p|Trimin1|14021 vs. uniprot
Match: A0A836CMH2_9STRA (Uncharacterized protein n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A836CMH2_9STRA)

HSP 1 Score: 293 bits (749), Expect = 5.700e-99
Identity = 159/159 (100.00%), Postives = 159/159 (100.00%), Query Frame = 3 
Query:   27 MAPKTTIVLALVAALACTCNGFVAPVMSAQGASSRQVFVKQSLAAGAAVLGGVAAASALPEGSPLEQVTKPLSDVSKQAASVLPDDPDKLPDEFAKNGPGLIQGKPLSPKNRGIAKKLEFKAEDNIAERNKTQPQSGNADVARRIEKGIDNASSKPLTL 503
            MAPKTTIVLALVAALACTCNGFVAPVMSAQGASSRQVFVKQSLAAGAAVLGGVAAASALPEGSPLEQVTKPLSDVSKQAASVLPDDPDKLPDEFAKNGPGLIQGKPLSPKNRGIAKKLEFKAEDNIAERNKTQPQSGNADVARRIEKGIDNASSKPLTL
Sbjct:    1 MAPKTTIVLALVAALACTCNGFVAPVMSAQGASSRQVFVKQSLAAGAAVLGGVAAASALPEGSPLEQVTKPLSDVSKQAASVLPDDPDKLPDEFAKNGPGLIQGKPLSPKNRGIAKKLEFKAEDNIAERNKTQPQSGNADVARRIEKGIDNASSKPLTL 159
The following BLAST results are available for this feature:
BLAST of jgi.p|Trimin1|14021 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 1
Match NameE-valueIdentityDescription
A0A836CMH2_9STRA5.700e-99100.00Uncharacterized protein n=1 Tax=Tribonema minus Ta... [more]
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
Contig_125contigContig_125:301373..303061 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Tribonema minus UTEX_B_31562021-06-17
Properties
Property NameValue
ProteomeIdTrimin1|14021|CE14020_95
Hectar predicted targeting categorysignal peptide
TranscriptId14343
TrackFilteredModels1
ProteinId14021
Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesTypePosition
jgi.p|Trimin1|14021gene_14160Tribonema minus UTEX_B_3156 geneContig_125 301373..303061 +


The following exon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
exon_14160_1exon_14160_1Tribonema minus UTEX_B_3156 exonContig_125 301373..301707 +
exon_14160_2exon_14160_2Tribonema minus UTEX_B_3156 exonContig_125 302756..303061 +


The following five_prime_UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
UTR5_14160UTR5_14160Tribonema minus UTEX_B_3156 five_prime_UTRContig_125 301373..301398 +


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
CDS_14160CDS_14160Tribonema minus UTEX_B_3156 CDSContig_125 301399..301707 +


The following three_prime_UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
UTR3_14160UTR3_14160Tribonema minus UTEX_B_3156 three_prime_UTRContig_125 302927..303061 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
jgi.p|Trimin1|14021Trimin1|14021|CE14020_95Tribonema minus UTEX_B_3156 polypeptideContig_125 301399..302926 +


Sequences
The following sequences are available for this feature:

spliced messenger RNA

>mRNA_14160 ID=mRNA_14160|Name=jgi.p|Trimin1|14021|organism=Tribonema minus UTEX_B_3156 |type=mRNA|length=641bp|location=Sequence derived from alignment at Contig_125:301373..303061+ (Tribonema minus UTEX_B_3156 )|Notes=Excludes all bases but those of type(s): exon.  
CAACAACTGAGGTGTACTTGACGATCATGGCTCCCAAGACCACCATCGTG
CTCGCCCTCGTGGCCGCGTTGGCCTGCACCTGCAATGGATTCGTCGCGCC
AGTCATGTCCGCTCAGGGCGCCAGCAGCAGGCAAGTGTTCGTGAAGCAGA
GCCTGGCGGCGGGCGCAGCGGTACTCGGGGGTGTGGCAGCTGCCTCTGCG
CTTCCGGAGGGCTCTCCTCTGGAGCAAGTGACCAAGCCTTTGTCGGATGT
GTCCAAGCAGGCAGCCAGCGTGCTGCCCGATGACCCCGACAAGCTCCCGG
ATGAGTTTGCCAAGAACGGGCCCGGCTTGATCCAGGGCAAGCCCCTGAGC
CCCAAGAACCGCGGCATCGCCAAGAAGCTGGAGTTCAAGGCGGAGGACAA
CATCGCCGAGAGAAACAAGACGCAGCCCCAGAGCGGCAACGCCGACGTGG
CCCGGCGCATTGAGAAGGGCATCGACAACGCCTCTTCCAAGCCCCTCACC
CTGTGATTCCATCCTGTGTTGGGGCCTGGCCCGGGGGGTGGGGGTGCGGT
ATGGTAGCTGGCCGGCCTGTTAGTTTTGCCCTCTTCATCAATGTGTTGTG
AGACCCACTGCAACAGGCCAGGGCTTGGTGGCAGAAGGAGG
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protein sequence of jgi.p|Trimin1|14021

>Trimin1|14021|CE14020_95 ID=Trimin1|14021|CE14020_95|Name=jgi.p|Trimin1|14021|organism=Tribonema minus UTEX_B_3156 |type=polypeptide|length=160bp
MAPKTTIVLALVAALACTCNGFVAPVMSAQGASSRQVFVKQSLAAGAAVL
GGVAAASALPEGSPLEQVTKPLSDVSKQAASVLPDDPDKLPDEFAKNGPG
LIQGKPLSPKNRGIAKKLEFKAEDNIAERNKTQPQSGNADVARRIEKGID
NASSKPLTL*
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mRNA from alignment at Contig_125:301373..303061+

Legend: exonfive_prime_UTRpolypeptideCDSthree_prime_UTR
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_14160 ID=mRNA_14160|Name=jgi.p|Trimin1|14021|organism=Tribonema minus UTEX_B_3156 |type=mRNA|length=1689bp|location=Sequence derived from alignment at Contig_125:301373..303061+ (Tribonema minus UTEX_B_3156 )
CAACAACTGAGGTGTACTTGACGATCATGGCTCCCAAGACCACCATCGTG
CTCGCCCTCGTGGCCGCGTTGGCCTGCACCTGCAATGGATTCGTCGCGCC
AGTCATGTCCGCTCAGGGCGCCAGCAGCAGGCAAGTGTTCGTGAAGCAGA
GCCTGGCGGCGGGCGCAGCGGTACTCGGGGGTGTGGCAGCTGCCTCTGCG
CTTCCGGAGGGCTCTCCTCTGGAGCAAGTGACCAAGCCTTTGTCGGATGT
GTCCAAGCAGGCAGCCAGCGTGCTGCCCGATGACCCCGACAAGCTCCCGG
ATGAGTTTGCCAAGAACGGGCCCGGCTTGATCCAGGTGAGCGATGTGATG
CTCCCCGTGAATGCCCTACGCTGCAGCAATGATATTCACAAACAACAGGC
TAATCTGCTTGCGCTACAAGTAAGACTGCATCGAGTGTTTGTCGCACGGT
CTTGCATCCCGATCTTTCGCTGGGAGCACACTGCCCTCGGTCATGCGCAC
TGGCATCTCTGTACGATGGGCATAGAAGTGCAGGTTGCTTCTTTTGTACG
CAGTTAACAAGCTGCGGTCTTGAGTGAAGTGGTTTGTTGAACTGTGGATT
GTGCTGCACAATGACTATCTGTCAGAACCCACAGACTGCAGTCCTCAGCA
TAACGAGTACATGCTCAACAGCAAGCAACCTTGCGGAAGCAACCACTCCC
GTACCATCCTGTCTCGATGAAGTTTTTCTTCTGCATTGTCACCGTTATCT
GAAATCCAAGTTTACAAGACGAGGCTACGTGGAAGCCAGCATTATTGACT
GTGGAATTGCATGGGGCAACATCCGCATTCAAAACCTGAGCGAGGTCACA
AAATGAGACAGAAATGCTGTACCGGCAGTTGGCGAATGGATGGTATTTCT
GAAGTTAGTTTGTTTGCTATCCTCACATCAAAAGTGGCTTTAGAAATATG
TGCTTTGCGCTCATGTCTCTTGTGAGCCCATAATTTATTTCGGCTAATCA
GCTCATGGACATTGAGTCTCGATTATGTGCAGTCTGTTATTCTGCACAGT
TTGAATTGTCGGCGCTTTTTGCCCTCAGGTCCTGCTGCATCAGTCTCTCA
CAGGCATTTTTCTTGAGTTTAATTGCATGCATGCCAGATTTGCCCCTAGT
ATCATCATAGTGCTGGCCCCTTGATAATTGGAAAGTAACCCAAGCCGCTC
AGCAATCACCCCACATGTGTGATGAGCAACATCATCGAGCTTGTGCCCAC
TCATCCCCGTTAGTACAGCTCAAGTGAGTTGACAGCACGTGAAGCTGACC
GTTGCACACTTATGGTGAGTTGACAATATCAGATTGAAAGTCGACTTGAA
GCTGACCATTTACCCCTACCATCACCATTTCAGGGCAAGCCCCTGAGCCC
CAAGAACCGCGGCATCGCCAAGAAGCTGGAGTTCAAGGCGGAGGACAACA
TCGCCGAGAGAAACAAGACGCAGCCCCAGAGCGGCAACGCCGACGTGGCC
CGGCGCATTGAGAAGGGCATCGACAACGCCTCTTCCAAGCCCCTCACCCT
GTGATTCCATCCTGTGTTGGGGCCTGGCCCGGGGGGTGGGGGTGCGGTAT
GGTAGCTGGCCGGCCTGTTAGTTTTGCCCTCTTCATCAATGTGTTGTGAG
ACCCACTGCAACAGGCCAGGGCTTGGTGGCAGAAGGAGG
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Coding sequence (CDS) from alignment at Contig_125:301373..303061+

>mRNA_14160 ID=mRNA_14160|Name=jgi.p|Trimin1|14021|organism=Tribonema minus UTEX_B_3156 |type=CDS|length=480bp|location=Sequence derived from alignment at Contig_125:301373..303061+ (Tribonema minus UTEX_B_3156 )
ATGGCTCCCAAGACCACCATCGTGCTCGCCCTCGTGGCCGCGTTGGCCTG
CACCTGCAATGGATTCGTCGCGCCAGTCATGTCCGCTCAGGGCGCCAGCA
GCAGGCAAGTGTTCGTGAAGCAGAGCCTGGCGGCGGGCGCAGCGGTACTC
GGGGGTGTGGCAGCTGCCTCTGCGCTTCCGGAGGGCTCTCCTCTGGAGCA
AGTGACCAAGCCTTTGTCGGATGTGTCCAAGCAGGCAGCCAGCGTGCTGC
CCGATGACCCCGACAAGCTCCCGGATGAGTTTGCCAAGAACGGGCCCGGC
TTGATCCAGGGCAAGCCCCTGAGCCCCAAGAACCGCGGCATCGCCAAGAA
GCTGGAGTTCAAGGCGGAGGACAACATCGCCGAGAGAAACAAGACGCAGC
CCCAGAGCGGCAACGCCGACGTGGCCCGGCGCATTGAGAAGGGCATCGAC
AACGCCTCTTCCAAGCCCCTCACCCTGTGA
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