mRNA_14134 (mRNA) Tribonema minus UTEX_B_3156

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
Namejgi.p|Trimin1|13927
Unique NamemRNA_14134
TypemRNA
OrganismTribonema minus UTEX_B_3156 (Tribonema minus UTEX_B_3156 )
Homology
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BLAST of jgi.p|Trimin1|13927 vs. uniprot
Match: A0A835ZBL5_9STRA (Signal peptidase complex subunit 2 (Fragment) n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A835ZBL5_9STRA)

HSP 1 Score: 499 bits (1284), Expect = 1.100e-177
Identity = 258/258 (100.00%), Postives = 258/258 (100.00%), Query Frame = 1 
Query:    1 AWYYSCTGSLLRQAEEGGGSEGGAATCDIGDGGAPASTTIMTKTIAHEEEREPSKVDTGDSLKVKQAMDEAVVRAVMDMGFEEDHKWSNVKLLLMVVACAFAGLAQLYPKPFPESRPVLAVCCISYFACSALLQVVMSCIEQDVILITKPNNKGVALRIRTAFPRFQEIYTTEIEVLAGAASKHATKLQLELMPLITSFLPISIGRKQPGDAATKDGAVKMNVGNYFDVEGYXXEEGVVEDMAKAVASAISAETKKRK 774
            AWYYSCTGSLLRQAEEGGGSEGGAATCDIGDGGAPASTTIMTKTIAHEEEREPSKVDTGDSLKVKQAMDEAVVRAVMDMGFEEDHKWSNVKLLLMVVACAFAGLAQLYPKPFPESRPVLAVCCISYFACSALLQVVMSCIEQDVILITKPNNKGVALRIRTAFPRFQEIYTTEIEVLAGAASKHATKLQLELMPLITSFLPISIGRKQPGDAATKDGAVKMNVGNYFDVEGYXXEEGVVEDMAKAVASAISAETKKRK
Sbjct:    1 AWYYSCTGSLLRQAEEGGGSEGGAATCDIGDGGAPASTTIMTKTIAHEEEREPSKVDTGDSLKVKQAMDEAVVRAVMDMGFEEDHKWSNVKLLLMVVACAFAGLAQLYPKPFPESRPVLAVCCISYFACSALLQVVMSCIEQDVILITKPNNKGVALRIRTAFPRFQEIYTTEIEVLAGAASKHATKLQLELMPLITSFLPISIGRKQPGDAATKDGAVKMNVGNYFDVEGYXXEEGVVEDMAKAVASAISAETKKRK 258
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BLAST of jgi.p|Trimin1|13927 vs. uniprot
Match: K8YV93_NANGC (Signal peptidase complex subunit 2 n=2 Tax=Monodopsidaceae TaxID=425072 RepID=K8YV93_NANGC)

HSP 1 Score: 159 bits (401), Expect = 2.140e-44
Identity = 92/234 (39.32%), Postives = 131/234 (55.98%), Query Frame = 1 
Query:  106 ASTTIMTKTIAHEEEREPSKVDTGDSLKVKQAMDEAVVRAVMDMGFEEDHKWSNVKLLLMVVACAFAGLAQLYPKPFPESRPVLAVCCISYFACSALLQVVMSCIEQDVILITKP----NNKGVALRIRTAFPRFQEIYTTEIEVLAGAASKHATKLQLELMPLITSFLPISIGRKQPGDAATKDGAVKMNVGNYFDVEGYXXEEGVVEDMA-------KAVASAISAETKKRK 774
            A+  + + T A EEE EP  +DTGD +KVKQ +DEAVV+A++D G+EE+  + N+KL LMV+AC FA +AQ YP PFPESRP+L VCC++YF  S ++Q+++S +EQD IL T+P       G AL++RT FPRFQ+ YT  +E                             G + P   ++K      ++G  FD EG   EEG+  ++        K +      E +KRK
Sbjct:    2 AAPQVASSTPADEEE-EPLHIDTGDQMKVKQVLDEAVVKAIVDAGYEENFFYDNIKLALMVIACVFALIAQFYPMPFPESRPLLGVCCLAYFLASTIIQLIVSYVEQDTILTTQPLRSGGKAGEALKVRTQFPRFQDEYTVFVE---------------------------EAGMQDPPTVSSK-----FSIGKVFDEEGNFYEEGLAREVQRLLDRYKKQMWDVAEKEERKRK 202
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BLAST of jgi.p|Trimin1|13927 vs. uniprot
Match: W7TQC5_9STRA (Signal peptidase complex subunit 2 n=1 Tax=Nannochloropsis gaditana TaxID=72520 RepID=W7TQC5_9STRA)

HSP 1 Score: 156 bits (395), Expect = 3.410e-44
Identity = 76/144 (52.78%), Postives = 105/144 (72.92%), Query Frame = 1 
Query:  106 ASTTIMTKTIAHEEEREPSKVDTGDSLKVKQAMDEAVVRAVMDMGFEEDHKWSNVKLLLMVVACAFAGLAQLYPKPFPESRPVLAVCCISYFACSALLQVVMSCIEQDVILITKP----NNKGVALRIRTAFPRFQEIYTTEIE 525
            A+  + + T A EEE EP  +DTGD +KVKQ +DEAVV+A++D G+EE+  + N+KL LMV+AC FA +AQ YP PFPESRP+L VCC++YF  S ++Q+++S +EQD IL T+P       G AL++RT FPRFQ+ YT  +E
Sbjct:    2 AAPQVASSTPADEEE-EPLHIDTGDQMKVKQVLDEAVVKAIVDAGYEENFFYDNIKLALMVIACVFALIAQFYPMPFPESRPLLGVCCLAYFLASTIIQLIVSYVEQDTILTTQPLRSGGKAGEALKVRTQFPRFQDEYTVFVE 144
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BLAST of jgi.p|Trimin1|13927 vs. uniprot
Match: A0A6H5K7Y7_9PHAE (Signal peptidase complex subunit 2 n=2 Tax=Ectocarpus TaxID=2879 RepID=A0A6H5K7Y7_9PHAE)

HSP 1 Score: 142 bits (359), Expect = 2.770e-38
Identity = 80/209 (38.28%), Postives = 119/209 (56.94%), Query Frame = 1 
Query:  157 PSKVDTGDSLKVKQAMDEAVVRAVMDMGFEEDHKWSNVKLLLMVVACAFAGLAQLYPKPFPESRPVLAVCCISYFACSALLQVVMSCIEQDVILITKPNNK---GVALRIRTAFPRFQEIYTTEIEVLAGAASKHATKLQLELMPLITSFLPISIGRKQPGDAATKDGAVKMNVGNYFDVEGYXXEEGVVEDMAKAVASAISAETKKRK 774
            P  V+TGD++K+KQ MD+AV++AV++MG+EEDH  +N KL +M +AC FA  AQ +P+PFPESR +LAVCC SYF CS  L ++++  E+D+IL TK ++    G  + +RT FPRF EIYT  +E                               ++PG    ++   + +VG YFD EG   E G+  D  K + + +    + +K
Sbjct:    9 PQSVETGDTVKMKQIMDDAVIKAVLEMGYEEDHTLNNAKLAVMALACVFAVTAQFWPQPFPESRALLAVCCFSYFTCSFGLHLIVTYWEKDLILATKRSSSRSLGKGIFVRTDFPRFDEIYTVSVE------------------------------ERKPGSKPIEE---QWHVGKYFDYEGNFDEWGMG-DAVKNLVTRLEKRARDKK 183
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BLAST of jgi.p|Trimin1|13927 vs. uniprot
Match: A0A7S2CUY6_9STRA (Signal peptidase complex subunit 2 n=2 Tax=Florenciella parvula TaxID=236787 RepID=A0A7S2CUY6_9STRA)

HSP 1 Score: 142 bits (359), Expect = 7.020e-38
Identity = 73/140 (52.14%), Postives = 95/140 (67.86%), Query Frame = 1 
Query:  151 REPSKVDTGDSLKVKQAMDEAVVRAVMDMG-----------FEEDHKWSNVKLLLMVVACAFAGLAQLYPKPFPESRPVLAVCCISYFACSALLQVVMSCIEQDVILITKPNNKGVA----LRIRTAFPRFQEIYTTEIE 525
            REP +V+ GD +KVKQ +DE+ V AV+ +G           ++E+H W NVKLLLMVVACAFA +AQ YP PFPESRP+L +CC +YF  S +LQ +++ IEQD I++T   N+  A    LRIRT FPRFQ  YT  +E
Sbjct:   40 REPMQVEIGDFVKVKQMLDESTVSAVLTLGALKVEDGYTYDYDENHYWDNVKLLLMVVACAFAMVAQFYPMPFPESRPLLGICCAAYFVASTVLQGIVTYIEQDTIMLTHAKNRQTAEKEGLRIRTTFPRFQYDYTVVVE 179
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BLAST of jgi.p|Trimin1|13927 vs. uniprot
Match: A0A7S3M684_9STRA (Signal peptidase complex subunit 2 n=1 Tax=Spumella elongata TaxID=89044 RepID=A0A7S3M684_9STRA)

HSP 1 Score: 140 bits (354), Expect = 2.300e-37
Identity = 76/199 (38.19%), Postives = 116/199 (58.29%), Query Frame = 1 
Query:  145 EEREPSKVDTGDSLKVKQAMDEAVVRAVMDMGFEEDHKWSNVKLLLMVVACAFAGLAQLYPKPFPESRPVLAVCCISYFACSALLQVVMSCIEQDVILITKPNNKGVA-LRIRTAFPRFQEIYTTEIEVLAGAASKHATKLQLELMPLITSFLPISIGRKQPGDAATKDGAVKMNVGNYFDVEGYXXEEGVVEDMAKAV 738
            EE+EP  ++TGDS+KVKQ +D+A ++A+ + G++ ++ W N+KLLLM ++C FA +AQ +P PFP SRP+LAVCC +YF  S++LQ +++ +++D IL  KP+ +    + IRT+FPRFQE +T                       LI  F      +  P D  T     KM VG YF  +G   E+  + D+ + V
Sbjct:   27 EEKEPFTIETGDSVKVKQVLDDAAIKAITEGGYDANYSWDNMKLLLMALSCVFAMVAQFFPIPFPASRPLLAVCCAAYFIISSVLQYIITFVDKDTILFVKPSKECAHDMEIRTSFPRFQEYFT-----------------------LIVQF------KGNPNDKKT---TAKMYVGRYFTEKGAFDEDAFINDVRRHV 193
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BLAST of jgi.p|Trimin1|13927 vs. uniprot
Match: A0A8J2SMV2_9STRA (Signal peptidase complex subunit 2 n=1 Tax=Pelagomonas calceolata TaxID=35677 RepID=A0A8J2SMV2_9STRA)

HSP 1 Score: 137 bits (345), Expect = 2.470e-36
Identity = 82/216 (37.96%), Postives = 115/216 (53.24%), Query Frame = 1 
Query:  127 KTIAHEEEREPSKVDTGDSLKVKQAMDEAVVRAVMDMGFEEDHKWSNVKLLLMVVACAFAGLAQLYPKPFPESRPVLAVCCISYFACSALLQVVMSCIEQDVILITKPNNKGVALRIRTAFPRFQEIYTTEIEVLAGAASKHATKLQLELMPLITSFLPISIGRKQPGDAATKDGAVKMNVGNYFDVEGYXXEEGVVEDMAKAVASAISAETKKRK 774
            K  A E E +   +DTGDSLKVKQ +DEA V+AV+  G++E H   N+K+ LM++AC FA  AQ  P PFP+ RP+L VCC  YF  S + Q+V+  +E+D++LITKP N    LR+RT FP+FQ+++T  +E     A  +  K                                   VG +FD  GY  E G  + + K VA     E+KK++
Sbjct:    7 KPEAAEGEDDYQHIDTGDSLKVKQILDEATVKAVLAKGYDEVHFIDNLKISLMIIACLFACAAQFNPIPFPKVRPILGVCCGGYFVFSGIHQLVVKYVERDIVLITKPKNAEHGLRVRTDFPKFQDLFTIIVEYDTPDAPPYEEK---------------------------------HCVGKFFDTGGYFWEAGFADTVQKMVAKF---ESKKKQ 186
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BLAST of jgi.p|Trimin1|13927 vs. uniprot
Match: A0A7S2GQY7_9STRA (Signal peptidase complex subunit 2 n=1 Tax=Dictyocha speculum TaxID=35687 RepID=A0A7S2GQY7_9STRA)

HSP 1 Score: 135 bits (341), Expect = 2.080e-35
Identity = 81/199 (40.70%), Postives = 114/199 (57.29%), Query Frame = 1 
Query:  145 EEREPSKVDTGDSLKVKQAMDEAVVRAVMDMGFEEDHKWSNVKLLLMVVACAFAGLAQLYPKPFPESRPVLAVCCISYFACSALLQVVMSCIEQDVILITKPNNKGVA-LRIRTAFPRFQEIYTTEIEVLAGAASKHATKLQLELMPLITSFLPISIGRKQPGDAATKDGAVKMNVGNYFDVEGYXXEEGVVEDMAKAV 738
            +ER+P + + GD +KVKQ +DEAVV+AV D+ + E++ W NVKLLLMV+ACAFA +AQ +P  FP SRP+L VCC +YF  S++LQ++++ IEQD I+ T+      A LRIRT FPRF   Y  ++ V          +  L   P  T+ L +                       YF  +G+  E+   ED+AKAV
Sbjct:   39 DERQPFQCEIGDFVKVKQTLDEAVVKAVQDLDYNENYYWDNVKLLLMVIACAFAMVAQFFPMEFPGSRPLLGVCCAAYFVASSVLQLIVTYIEQDCIMTTEAKGPATAGLRIRTDFPRFS--YDFQLIV----------QRNLPESPTSTTILKVF---------------------KYFTEDGWFDEDSFEEDVAKAV 204
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BLAST of jgi.p|Trimin1|13927 vs. uniprot
Match: A0A7S2GM61_9STRA (Signal peptidase complex subunit 2 n=1 Tax=Dictyocha speculum TaxID=35687 RepID=A0A7S2GM61_9STRA)

HSP 1 Score: 129 bits (323), Expect = 7.840e-33
Identity = 65/127 (51.18%), Postives = 91/127 (71.65%), Query Frame = 1 
Query:  145 EEREPSKVDTGDSLKVKQAMDEAVVRAVMDMGFEEDHKWSNVKLLLMVVACAFAGLAQLYPKPFPESRPVLAVCCISYFACSALLQVVMSCIEQDVILITKPNNKGV-----ALRIRTAFPRFQEIY 510
            EER+P + + GD +KVKQ +DEAVV+A+  + + E++ W NVK+LLMVVACAFA +AQ +P  FP+SRP+L VCC +YF  S++LQ++ + IE+D I+ T+P   GV      LRIR+ F RFQ  Y
Sbjct:   28 EERQPLQCEVGDFIKVKQTLDEAVVKAIQGIDYNENYYWDNVKILLMVVACAFAMVAQFFPMEFPQSRPLLGVCCAAYFVASSILQLIDTYIEKDCIMTTEPK-AGVDAASSGLRIRSNFARFQYEY 153
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BLAST of jgi.p|Trimin1|13927 vs. uniprot
Match: A0A7S3V7R4_9STRA (Signal peptidase complex subunit 2 n=1 Tax=Chaetoceros debilis TaxID=122233 RepID=A0A7S3V7R4_9STRA)

HSP 1 Score: 127 bits (319), Expect = 4.580e-32
Identity = 91/247 (36.84%), Postives = 119/247 (48.18%), Query Frame = 1 
Query:  127 KTIAHEEEREPSKVDTGDSLKVKQAMDEAVVRAVMD-------------MGFEEDHKWSNVKLLLMVVACAFAGLAQLYPKPFPESRPVLAVCCISYFACSALLQVVMSCIEQDVILITK------------PNNKGVALRIRTAFPRFQEIYTTEIEVLAGAASKHATKLQLELMPLITSFLPISIGRKQPGDAATKDGAVKMNVGNYFDVEGYXXEEGV---VEDMAKAVASA-ISAETKKRK*N 780
            K +  EEE    +VDTGD +K+KQ +DE V    ++             +G  EDH+ SN+KL+LM VACAFA +AQ  P PFP  RP+L VCC  YF+ S +LQ++ + +++D ILITK            PN     LR+RT FPRF E YT  IE              LE  P +                  KD     +VG +FD EG   E G+   VE + +   SA    E KK K N
Sbjct:    6 KVVEEEEEVVLLQVDTGDIIKLKQILDETVANTFLEENTLEGHDSRAKNIGLHEDHRLSNIKLILMAVACAFAMVAQFSPLPFPNCRPILGVCCAVYFSLSGVLQLITTFLDKDCILITKALEGKPAVVKNNPNLAKYGLRVRTIFPRFSEFYTVRIEFEG-----------LENSPFV------------------KD---TWSVGEFFDKEGMFDEYGLQYAVEKLYRKFESAKFEKEEKKEKTN 220
The following BLAST results are available for this feature:
BLAST of jgi.p|Trimin1|13927 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
A0A835ZBL5_9STRA1.100e-177100.00Signal peptidase complex subunit 2 (Fragment) n=1 ... [more]
K8YV93_NANGC2.140e-4439.32Signal peptidase complex subunit 2 n=2 Tax=Monodop... [more]
W7TQC5_9STRA3.410e-4452.78Signal peptidase complex subunit 2 n=1 Tax=Nannoch... [more]
A0A6H5K7Y7_9PHAE2.770e-3838.28Signal peptidase complex subunit 2 n=2 Tax=Ectocar... [more]
A0A7S2CUY6_9STRA7.020e-3852.14Signal peptidase complex subunit 2 n=2 Tax=Florenc... [more]
A0A7S3M684_9STRA2.300e-3738.19Signal peptidase complex subunit 2 n=1 Tax=Spumell... [more]
A0A8J2SMV2_9STRA2.470e-3637.96Signal peptidase complex subunit 2 n=1 Tax=Pelagom... [more]
A0A7S2GQY7_9STRA2.080e-3540.70Signal peptidase complex subunit 2 n=1 Tax=Dictyoc... [more]
A0A7S2GM61_9STRA7.840e-3351.18Signal peptidase complex subunit 2 n=1 Tax=Dictyoc... [more]
A0A7S3V7R4_9STRA4.580e-3236.84Signal peptidase complex subunit 2 n=1 Tax=Chaetoc... [more]

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
Contig_125contigContig_125:56174..60095 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Tribonema minus UTEX_B_31562021-06-17
Properties
Property NameValue
ProteomeIdTrimin1|13927|CE13926_182
BRITEko00000,ko00001,ko01000
KEGG Pathwayko03060,map03060
KEGG koko:K12947
GOsGO:0005575,GO:0005622,GO:0005623,GO:0005737,GO:0005783,GO:0005787,GO:0005789,GO:0006465,GO:0006508,GO:0006518,GO:0006605,GO:0006807,GO:0006810,GO:0006886,GO:0008104,GO:0008150,GO:0008152,GO:0009987,GO:0010467,GO:0012505,GO:0015031,GO:0015833,GO:0016020,GO:0016485,GO:0019538,GO:0031984,GO:0032991,GO:0033036,GO:0033365,GO:0034613,GO:0034641,GO:0042175,GO:0042886,GO:0043170,GO:0043226,GO:0043227,GO:0043229,GO:0043231,GO:0043603,GO:0044237,GO:0044238,GO:0044260,GO:0044267,GO:0044422,GO:0044424,GO:0044425,GO:0044432,GO:0044444,GO:0044446,GO:0044464,GO:0045047,GO:0045184,GO:0046907,GO:0051179,GO:0051234,GO:0051604,GO:0051641,GO:0051649,GO:0070727,GO:0070972,GO:0071702,GO:0071704,GO:0071705,GO:0072594,GO:0072599,GO:0098796,GO:0098827,GO:1901564,GO:1902494,GO:1905368
Preferred nameSPCS2
Descriptionsignal peptide processing
COG categoryK
Max annot lvl2759|Eukaryota
EggNOG OGsKOG4072@1|root,KOG4072@2759|Eukaryota
Evalue2.02e-39
Seed ortholog2880.D8LDY7
Hectar predicted targeting categoryother localisation
Ec32 ortholog descriptionProbable Spc2 homolog, Subunit of Signal Peptidase Complex
Ec32 orthologEc-23_003280.1
TranscriptId14249
TrackFilteredModels1
ProteinId13927
Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesTypePosition
jgi.p|Trimin1|13927gene_14134Tribonema minus UTEX_B_3156 geneContig_125 56174..60095 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
jgi.p|Trimin1|13927Trimin1|13927|CE13926_182Tribonema minus UTEX_B_3156 polypeptideContig_125 56259..60095 -


The following exon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
exon_14134_4exon_14134_4Tribonema minus UTEX_B_3156 exonContig_125 56174..56633 -
exon_14134_3exon_14134_3Tribonema minus UTEX_B_3156 exonContig_125 57472..57627 -
exon_14134_2exon_14134_2Tribonema minus UTEX_B_3156 exonContig_125 58890..58946 -
exon_14134_1exon_14134_1Tribonema minus UTEX_B_3156 exonContig_125 59907..60095 -


The following three_prime_UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
UTR3_14134UTR3_14134Tribonema minus UTEX_B_3156 three_prime_UTRContig_125 56174..56258 -


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
CDS_14134CDS_14134Tribonema minus UTEX_B_3156 CDSContig_125 59907..60095 -


Sequences
The following sequences are available for this feature:

spliced messenger RNA

>mRNA_14134 ID=mRNA_14134|Name=jgi.p|Trimin1|13927|organism=Tribonema minus UTEX_B_3156 |type=mRNA|length=862bp|location=Sequence derived from alignment at Contig_125:56174..60095- (Tribonema minus UTEX_B_3156 )|Notes=Excludes all bases but those of type(s): exon.  
GCGTGGTATTACAGCTGCACCGGCTCGCTTCTTCGCCAGGCAGAGGAAGG
TGGTGGAAGTGAGGGAGGTGCAGCAACTTGCGACATTGGAGACGGCGGCG
CACCAGCGAGCACGACAATCATGACTAAAACTATCGCCCACGAGGAGGAA
CGAGAGCCTTCTAAGGTGGACACTGGAGACAGCCTAAAGGTCAAGCAGGC
GATGGATGAGGCGGTGGTGAGGGCTGTCATGGACATGGGGTTTGAGGAGG
ACCACAAGTGGAGCAACGTAAAGCTGCTGCTGATGGTGGTCGCGTGTGCT
TTTGCTGGCCTGGCTCAGCTCTACCCCAAGCCTTTTCCAGAAAGCCGCCC
TGTGCTGGCGGTCTGCTGCATCAGCTACTTTGCATGCAGTGCGCTGCTTC
AGGTGGTGATGAGCTGCATTGAACAAGACGTCATACTCATCACAAAACCC
AACAACAAGGGTGTTGCACTGCGCATTCGCACCGCCTTCCCTCGCTTCCA
AGAGATCTACACAACAGAAATTGAAGTTCTTGCAGGGGCCGCATCGAAGC
ATGCCACAAAACTCCAACTTGAACTTATGCCGCTCATCACCAGCTTCCTG
CCAATATCGATTGGGCGGAAGCAGCCCGGTGATGCTGCAACGAAGGATGG
GGCTGTGAAGATGAATGTGGGAAATTACTTTGATGTCGAAGGGTACTTTG
ATGAAGAGGGCGTAGTTGAAGACATGGCCAAGGCCGTTGCATCTGCCATT
TCGGCAGAGACAAAGAAGCGGAAGTAGAATGTTGTGTAGTAGGGGTTGTG
TTTGTGGGTTCATTGACCAACCCCACACTGCTGTACATGCACTGGTCATA
CGCAGTATCTTC
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protein sequence of jgi.p|Trimin1|13927

>Trimin1|13927|CE13926_182 ID=Trimin1|13927|CE13926_182|Name=jgi.p|Trimin1|13927|organism=Tribonema minus UTEX_B_3156 |type=polypeptide|length=259bp
AWYYSCTGSLLRQAEEGGGSEGGAATCDIGDGGAPASTTIMTKTIAHEEE
REPSKVDTGDSLKVKQAMDEAVVRAVMDMGFEEDHKWSNVKLLLMVVACA
FAGLAQLYPKPFPESRPVLAVCCISYFACSALLQVVMSCIEQDVILITKP
NNKGVALRIRTAFPRFQEIYTTEIEVLAGAASKHATKLQLELMPLITSFL
PISIGRKQPGDAATKDGAVKMNVGNYFDVEGYFDEEGVVEDMAKAVASAI
SAETKKRK*
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mRNA from alignment at Contig_125:56174..60095-

Legend: polypeptideexonCDSthree_prime_UTR
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_14134 ID=mRNA_14134|Name=jgi.p|Trimin1|13927|organism=Tribonema minus UTEX_B_3156 |type=mRNA|length=3922bp|location=Sequence derived from alignment at Contig_125:56174..60095- (Tribonema minus UTEX_B_3156 )
GCGTGGTATTACAGCTGCACCGGCTCGCTTCTTCGCCAGGCAGAGGAAGG
TGGTGGAAGTGAGGGAGGTGCAGCAACTTGCGACATTGGAGACGGCGGCG
CACCAGCGAGCACGACAATCATGACTAAAACTATCGCCCACGAGGAGGAA
CGAGAGCCTTCTAAGGTGGACACTGGAGACAGCCTAAAGGTAATAGATGA
ACTCGTTGCTCAGAGTATCGCTTCCGTAGGAGGCTTGTGTGCCCACTGCA
AAGATTGCTCGCTTTTCAAACTTCACCTATCATGATTTTTTGCCAACTCT
TCAACTACGCGAACCTGTGACAGGATTGCCCACCAGGGCGTACATGCTAC
ATGTAATTTGCGTGTATGCTATATGTCGTTTCTTGGACCAGCAGCTTTTC
AATTCCTCGCAGCATTAGTGACATATTGAGTTTGCGGAGGTCTAGTCACT
TCAACCTCAGTCGCACGTGGCACAGCGAGTGCTGAACTGTACTGGTACCA
GCAATCCGACAGACTGGCATTATGTAAAAGAAAAATCGTGGTGCTGGTTG
ATGATTTCTGTTCTTGCGTGTAGCTGCTGTTGGTAGGAGCACAGTAAGTG
TTGGCTTGTGTGATACCAGGAAGCACTGCTACTTCAAACAAACATTCAGC
GTCAGCACACATGCAGTTGCGGTTCAGCGCTGGCTTGTATCAAGCTCTTG
CTGCCATGCATCATGCCATATATGTACTTGTGCAAAGAGAATGCACTTGT
AAGCAAGCCACTCGTCCCGGCAGCGCTCCTGTCCGGACAATAAGTGCGGA
CAGTCAAGAGCGTCTGAATATGTGATGCAAGTGAGGTTGTGACTCTAAGG
TTCACTACCCAGTTGTTGACCTCAATATTACAATCAAGCAGGCTTGCACG
TCAAGCAGCGGTACACGAGAGTGATGAGCTGCGCCCATACATTTTGTACT
GCACGCTCCCTCCTCCAAACACGTCTGTTAGCGTATTTCGTGACATTGAC
AGCTGGCTGTGCAGCACCTGTCAAAAACCGTTGGCGGCAGATGGAAATGC
AAGGGTGCAACCAACCTGTTCAAGACTGACTGACATCTGTGGATTGCGCA
TTGAATGATGATATTGGCGTGGCTTGTGGCTTGGTTATTATTTGTACAGG
TCAAGCAGGCGATGGATGAGGCGGTGGTGAGGGCTGTCATGGACATGGGG
TTTGAGGTATGTATGTATCTCAGCTATAATCACAATCACACGCACATGAA
AACACAGAAGGCGATGCAGGCTACAATATCACACACACATAAACACATTC
GTAACAAAAACAGTGCTTGTAGACACAGCCGGCTATGCAAGCTATGTACA
ATGAACTTGTGCGCGAGCGAGAGAGTACCTAACCGTAACTAGCCCTCATC
CTAGTCTAACCCTTACCCTAAGTTCGCAACGAGCGGTGGTGGTGTTGGTA
CGACGGGCGCAGCGCACCTGCAGTGTTTCATACGTGTTTTGTTTTATACA
TGGTGCGCATGAGCGCTTTGTGACAAATAGTCCACAAATATTCGTCAGAA
GGTGTTTAGGTGTATGTGTGTGTGTGTGTGTGTGTGGGGGGGGGGGGGGG
GGGGGTGATGGGAGGGGTCAAGGGCGCCTGACCAGCACCGAATTTGGTTG
GATGCAGGGTTGCAGCTGCAAATGCAGTTCATCGCGGTGCAGTCGCATTG
ATGTTTCATTCTTGGCTTCTGAACTAAAAGGTGTTCACGCCTGTAGCACT
TGTGTAAACTAGCTGTTGCAGCAAGCGTTACAAGCACGAACGCTGCACAG
GTTTCTGCTGAGAGCAAGTCTAGGCCTTGGTACCATATGTATACTTCTAA
GCATGTGCCGTGAGAGCACAGTGAAGTGTGTGTTGTGCGAGGCTGGCCTG
ATTGCAATTGTGGGCAGCAGAAAGTGAAGGCAACAGCTAGGGCACGGTCT
CACAGCACACAAAAATTGATGATGTTGTACTTGAAGTTTGAAGGGCACGG
TCTCAGAGCACACAAAAAAAATGATGTTGTACTTGAAGTTTCTTGCATCA
GCGCATCTGCACATATAGCATATAAGTGCATGTTACAGGAACGCCCTGAA
ACACAACTCGATGTTTTTGGGCGTTGATGATTGGGCACTTGTATCAAGTG
TGCCTGTTGGTGTATATCCAGCTTCAATACTGGTTGAGTGATGTTGAGCA
TATGCACAAGGACCGCATTGCACAACCAGGGCATCAATTTCGTACCTCAG
ATGATGTTGATACTTCAGTGAGCATGTTTGCAAATTACCACTAGCGAGCG
CAAGGATTAGATTGAATTTGGACAGGCATTCAGCTGCAGCTGATGGTGGT
CGTGTGTGCACTTTGTCGCCTTGCACCAGCCTTACTGCATATTCTAGTCT
ATCGAGTTGATGGTGAAGTTGCCCTGTTCAACTCATCAACTTGTGACGCT
CCCCACTCTGCCGCTCAGGAGGACCACAAGTGGAGCAACGTAAAGCTGCT
GCTGATGGTGGTCGCGTGTGCTTTTGCTGGCCTGGCTCAGCTCTACCCCA
AGCCTTTTCCAGAAAGCCGCCCTGTGCTGGCGGTCTGCTGCATCAGCTAC
TTTGCATGCAGTGCGCTGCTTCAGGTGAGCCATGAATCACATTTTGAAGT
GTAGAAGAGGTCAATACAAATGTGACAATTGCTCCAGTAGCCTTTTTCTT
GGTACAACAGTTGTTGAGCGTTGCTGCAACAGCTTTCAAGTTTGAAAGAA
ACTTCAACTTTTGCTGTCCGAAAAAAATCTCGATTGTTGCTTCATGAAGG
TTCTAATTTCATGAACATCCTCAAGCCTAATAAGACAGGCTCATCTGTGT
AAACCGCGTCTAGCACCTCCTTTCTTGAGAACTCATGGCATATGTCGTAC
TCTTGTTTCACTCCATGAATGATTAAAGCTTCTTTGTAGTTGTCAAGCTA
CTGGCTTCGCGACAAAGTTGAAGATCGGCAGCACTTGAGGTTACAACGAC
AGCGGCAGACTCGGCCAGACTTGAACTCGGGTTCCGGCTTACACACGCAA
CTGTGTGAACGCAAGCAGCCAACAGCACATGTTTGCACATCCCATACATA
CCCCATGATGGTAACCTGCTCCTGGCATCACCTTGTGGCCACATGCATGT
CCAGACTTGTCTGCCGCCACAGTCTTGGTGTGTGCTGACTCTGATTTTGC
AGTAACAGTGATGCAAGCCTCCAATTGTTTGAAGGAACAGTCCGTTGCCG
TGCAGTTGATTCTGGCCCTTTGTATGTATGGTGTGAAGAGTGCAATACAA
GCTGTGCAATACAAGCTGTATTGCACTCTTCACACCATACATACAATGTG
CATAGCCAATGCTTCTCTATGCTCAAGCAGCACAACATATTTGCCTGTAC
TGTCTCATCCTACAGCTTTGGTGCTTTTTTGTATACGCCTGTGCCCTCAT
GTGTGCCCCCAGGTGGTGATGAGCTGCATTGAACAAGACGTCATACTCAT
CACAAAACCCAACAACAAGGGTGTTGCACTGCGCATTCGCACCGCCTTCC
CTCGCTTCCAAGAGATCTACACAACAGAAATTGAAGTTCTTGCAGGGGCC
GCATCGAAGCATGCCACAAAACTCCAACTTGAACTTATGCCGCTCATCAC
CAGCTTCCTGCCAATATCGATTGGGCGGAAGCAGCCCGGTGATGCTGCAA
CGAAGGATGGGGCTGTGAAGATGAATGTGGGAAATTACTTTGATGTCGAA
GGGTACTTTGATGAAGAGGGCGTAGTTGAAGACATGGCCAAGGCCGTTGC
ATCTGCCATTTCGGCAGAGACAAAGAAGCGGAAGTAGAATGTTGTGTAGT
AGGGGTTGTGTTTGTGGGTTCATTGACCAACCCCACACTGCTGTACATGC
ACTGGTCATACGCAGTATCTTC
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Coding sequence (CDS) from alignment at Contig_125:56174..60095-

>mRNA_14134 ID=mRNA_14134|Name=jgi.p|Trimin1|13927|organism=Tribonema minus UTEX_B_3156 |type=CDS|length=777bp|location=Sequence derived from alignment at Contig_125:56174..60095- (Tribonema minus UTEX_B_3156 )
GCGTGGTATTACAGCTGCACCGGCTCGCTTCTTCGCCAGGCAGAGGAAGG
TGGTGGAAGTGAGGGAGGTGCAGCAACTTGCGACATTGGAGACGGCGGCG
CACCAGCGAGCACGACAATCATGACTAAAACTATCGCCCACGAGGAGGAA
CGAGAGCCTTCTAAGGTGGACACTGGAGACAGCCTAAAGGTCAAGCAGGC
GATGGATGAGGCGGTGGTGAGGGCTGTCATGGACATGGGGTTTGAGGAGG
ACCACAAGTGGAGCAACGTAAAGCTGCTGCTGATGGTGGTCGCGTGTGCT
TTTGCTGGCCTGGCTCAGCTCTACCCCAAGCCTTTTCCAGAAAGCCGCCC
TGTGCTGGCGGTCTGCTGCATCAGCTACTTTGCATGCAGTGCGCTGCTTC
AGGTGGTGATGAGCTGCATTGAACAAGACGTCATACTCATCACAAAACCC
AACAACAAGGGTGTTGCACTGCGCATTCGCACCGCCTTCCCTCGCTTCCA
AGAGATCTACACAACAGAAATTGAAGTTCTTGCAGGGGCCGCATCGAAGC
ATGCCACAAAACTCCAACTTGAACTTATGCCGCTCATCACCAGCTTCCTG
CCAATATCGATTGGGCGGAAGCAGCCCGGTGATGCTGCAACGAAGGATGG
GGCTGTGAAGATGAATGTGGGAAATTACTTTGATGTCGAAGGGTACTTTG
ATGAAGAGGGCGTAGTTGAAGACATGGCCAAGGCCGTTGCATCTGCCATT
TCGGCAGAGACAAAGAAGCGGAAGTAG
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