mRNA_14076 (mRNA) Tribonema minus UTEX_B_3156

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview


Name	jgi.p\|Trimin1\|76850
Unique Name	mRNA_14076
Type	mRNA
Organism	Tribonema minus UTEX_B_3156 (Tribonema minus UTEX_B_3156 )

Homology

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BLAST of jgi.p|Trimin1|76850 vs. uniprot
Match: A0A835YXI4_9STRA (Peptidyl-prolyl cis-trans isomerase n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A835YXI4_9STRA)

HSP 1 Score: 427 bits (1098), Expect = 2.590e-149
Identity = 215/215 (100.00%), Postives = 215/215 (100.00%), Query Frame = 2

Query:   11 MRFFVAAACLLASPVAAFLPVSGALSSGSFTGAAMAHRSTSSSSGSTRVMQMANPKVFFDIDIDNKDAGRIVFELRKDVVPKTVENFRELCTRPKGKGFKGSSFHRIIPQFMCQGGDFTKGNGTGGESIYGRTFPDENFQLKHTGGGILSMANAGPDTNGSQFFICTVATPWLDNKHVVFGSVVEGGDVVKKMEGVGSPSGRTAKVVTIRDCGEA 655
            MRFFVAAACLLASPVAAFLPVSGALSSGSFTGAAMAHRSTSSSSGSTRVMQMANPKVFFDIDIDNKDAGRIVFELRKDVVPKTVENFRELCTRPKGKGFKGSSFHRIIPQFMCQGGDFTKGNGTGGESIYGRTFPDENFQLKHTGGGILSMANAGPDTNGSQFFICTVATPWLDNKHVVFGSVVEGGDVVKKMEGVGSPSGRTAKVVTIRDCGEA
Sbjct:    1 MRFFVAAACLLASPVAAFLPVSGALSSGSFTGAAMAHRSTSSSSGSTRVMQMANPKVFFDIDIDNKDAGRIVFELRKDVVPKTVENFRELCTRPKGKGFKGSSFHRIIPQFMCQGGDFTKGNGTGGESIYGRTFPDENFQLKHTGGGILSMANAGPDTNGSQFFICTVATPWLDNKHVVFGSVVEGGDVVKKMEGVGSPSGRTAKVVTIRDCGEA 215

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BLAST of jgi.p|Trimin1|76850 vs. uniprot
Match: A0A6H5KR31_9PHAE (Peptidyl-prolyl cis-trans isomerase n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KR31_9PHAE)

HSP 1 Score: 270 bits (690), Expect = 4.100e-87
Identity = 145/228 (63.60%), Postives = 169/228 (74.12%), Query Frame = 2

Query:   11 MRFFVAAACLL----ASPVAAFLPVSGAL--------SSGSFTGAAMAHRSTSSSSGSTR-VMQMANPKVFFDIDIDNKDAGRIVFELRKDVVPKTVENFRELCT-RPKGKGFKGSSFHRIIPQFMCQGGDFTKGNGTGGESIYGRTFPDENFQLKHTGGGILSMANAGPDTNGSQFFICTVATPWLDNKHVVFGSVVEGGDVVKKMEGVGSPSGRTAKVVTIRDCGE 652
            M+FFVAAA  +    ++P   F+   G++        ++ S  G   A R+ ++   S+R  + MANPKVFFDID   KD GRI  ELR DVVPKT ENFR+LCT     KGFKGS FHRIIPQFMCQGGDFT G+GTGGESIYGRTFPDENF+L HTG GILSMANAGP+TNGSQFF+CTV  PWLD KHVVFGSVV+G DVVKK+E +GSPSG+T   VTI+DCGE
Sbjct:    1 MKFFVAAAAGVVLGASAPALGFVHGGGSMVGSAQSRFAATSVRGGHSAPRAAAAGQRSSRQTLAMANPKVFFDIDAGGKDMGRITLELRADVVPKTAENFRQLCTGEGPVKGFKGSKFHRIIPQFMCQGGDFTAGDGTGGESIYGRTFPDENFELSHTGPGILSMANAGPNTNGSQFFLCTVDCPWLDGKHVVFGSVVDGMDVVKKLEALGSPSGKTKTAVTIKDCGE 228

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BLAST of jgi.p|Trimin1|76850 vs. uniprot
Match: A0A7S2P287_9STRA (Peptidyl-prolyl cis-trans isomerase n=2 Tax=Leptocylindrus danicus TaxID=163516 RepID=A0A7S2P287_9STRA)

HSP 1 Score: 258 bits (660), Expect = 6.170e-83
Identity = 121/169 (71.60%), Postives = 140/169 (82.84%), Query Frame = 2

Query:  146 STRVMQMANPKVFFDIDIDNKDAGRIVFELRKDVVPKTVENFRELCTRPKGKGFKGSSFHRIIPQFMCQGGDFTKGNGTGGESIYGRTFPDENFQLKHTGGGILSMANAGPDTNGSQFFICTVATPWLDNKHVVFGSVVEGGDVVKKMEGVGSPSGRTAKVVTIRDCGE 652
            S+  M   NPKVFFD+++  +DAGRIVFELR DV PKT ENFR LCT  KG G+KGSSFHR+IPQFMCQGGDFT+G+GTGG+SIYG  FPDE+F L H G GILSMANAGP+TNGSQFFICTV TPWLD +HVVFG+VVEG +VV  +E VGS SGRT+K V ++DCGE
Sbjct:   33 SSVAMMAGNPKVFFDMEVGGEDAGRIVFELRADVAPKTAENFRALCTGEKGFGYKGSSFHRVIPQFMCQGGDFTRGDGTGGKSIYGEKFPDEDFSLPHVGKGILSMANAGPNTNGSQFFICTVDTPWLDGRHVVFGNVVEGIEVVDAIEEVGSQSGRTSKTVVVKDCGE 201

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BLAST of jgi.p|Trimin1|76850 vs. uniprot
Match: C3XQD3_BRAFL (Peptidyl-prolyl cis-trans isomerase n=3 Tax=Chordata TaxID=7711 RepID=C3XQD3_BRAFL)

HSP 1 Score: 256 bits (654), Expect = 1.290e-82
Identity = 121/163 (74.23%), Postives = 134/163 (82.21%), Query Frame = 2

Query:  164 MANPKVFFDIDIDNKDAGRIVFELRKDVVPKTVENFRELCTRPKGKGFKGSSFHRIIPQFMCQGGDFTKGNGTGGESIYGRTFPDENFQLKHTGGGILSMANAGPDTNGSQFFICTVATPWLDNKHVVFGSVVEGGDVVKKMEGVGSPSGRTAKVVTIRDCGE 652
            MA P+VFFDI  D    GRIV ELR DVVPKT ENFR LCT  KG G+KGSSFHR+I  FMCQGGDFT+GNGTGG+SIYG  F DENFQLKHTG G+LSMANAGP+TNGSQFF+CTV T WLD KHVVFGSVVEG DVVKK+EG GS SG+T+K + I DCG+
Sbjct:    1 MAKPRVFFDITADGAPLGRIVMELRADVVPKTAENFRALCTGEKGFGYKGSSFHRVITDFMCQGGDFTRGNGTGGKSIYGEKFADENFQLKHTGAGVLSMANAGPNTNGSQFFLCTVKTAWLDGKHVVFGSVVEGMDVVKKVEGYGSSSGKTSKKIVIADCGQ 163

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BLAST of jgi.p|Trimin1|76850 vs. uniprot
Match: UPI0012EDD9B8 (peptidyl-prolyl cis-trans isomerase A n=1 Tax=Anarrhichthys ocellatus TaxID=433405 RepID=UPI0012EDD9B8)

HSP 1 Score: 256 bits (654), Expect = 1.290e-82
Identity = 123/163 (75.46%), Postives = 136/163 (83.44%), Query Frame = 2

Query:  164 MANPKVFFDIDIDNKDAGRIVFELRKDVVPKTVENFRELCTRPKGKGFKGSSFHRIIPQFMCQGGDFTKGNGTGGESIYGRTFPDENFQLKHTGGGILSMANAGPDTNGSQFFICTVATPWLDNKHVVFGSVVEGGDVVKKMEGVGSPSGRTAKVVTIRDCGE 652
            MANPKVFFDI+ID K AGRI+ ELR DVVPKT ENFR LCT  +G G+KGSSFHR+I  FMCQGGDFTKG+GTGG+SIYG  F DENF LKHTG G+LSMANAG +TNGSQFF+CTV T WLD KHVVFGSVVEG DVVKKME VGS SG+T+K V I D G+
Sbjct:    1 MANPKVFFDINIDGKSAGRIIMELRADVVPKTAENFRALCTGERGFGYKGSSFHRVITDFMCQGGDFTKGDGTGGKSIYGEKFADENFALKHTGPGVLSMANAGKNTNGSQFFLCTVKTSWLDGKHVVFGSVVEGMDVVKKMEAVGSSSGKTSKKVVIADSGQ 163

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BLAST of jgi.p|Trimin1|76850 vs. uniprot
Match: A0A7S1D0F5_CYCTE (Peptidyl-prolyl cis-trans isomerase n=2 Tax=Cyclophora tenuis TaxID=216820 RepID=A0A7S1D0F5_CYCTE)

HSP 1 Score: 258 bits (658), Expect = 1.790e-82
Identity = 121/168 (72.02%), Postives = 138/168 (82.14%), Query Frame = 2

Query:  149 TRVMQMANPKVFFDIDIDNKDAGRIVFELRKDVVPKTVENFRELCTRPKGKGFKGSSFHRIIPQFMCQGGDFTKGNGTGGESIYGRTFPDENFQLKHTGGGILSMANAGPDTNGSQFFICTVATPWLDNKHVVFGSVVEGGDVVKKMEGVGSPSGRTAKVVTIRDCGE 652
            T  +  ANPKVFFDI+   ++ GRI FELR DVVP+T ENFR LCT   G G+KGS+FHR+IPQFMCQGGDFT  NGTGG+SIYGRTF DENF LKH G GILSMANAGP+TNGSQFFICTV TPWLD KHVVFGSVV+G DVV+K+E  GSP+G T+K + I+DCGE
Sbjct:   45 TANVMAANPKVFFDIEAGGEEVGRITFELRSDVVPETAENFRALCTGENGFGYKGSTFHRVIPQFMCQGGDFTNHNGTGGKSIYGRTFSDENFALKHEGKGILSMANAGPNTNGSQFFICTVDTPWLDGKHVVFGSVVDGIDVVEKVESYGSPNGATSKTIVIKDCGE 212

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BLAST of jgi.p|Trimin1|76850 vs. uniprot
Match: UPI001403BBF0 (peptidyl-prolyl cis-trans isomerase-like n=1 Tax=Amblyraja radiata TaxID=386614 RepID=UPI001403BBF0)

HSP 1 Score: 256 bits (653), Expect = 1.960e-82
Identity = 121/161 (75.16%), Postives = 135/161 (83.85%), Query Frame = 2

Query:  173 PKVFFDIDIDNKDAGRIVFELRKDVVPKTVENFRELCTRPKGKGFKGSSFHRIIPQFMCQGGDFTKGNGTGGESIYGRTFPDENFQLKHTGGGILSMANAGPDTNGSQFFICTVATPWLDNKHVVFGSVVEGGDVVKKMEGVGSPSGRTAKVVTIRDCGEA 655
            P+VFFD+  +N+ AGR++FELR DVVPKT ENFR LCT+PKG+GFKGS FHRIIP FMCQGGDFTKGNGTGG+SIYG  FPDENF LKH   G LSMANAGP+TNGSQFFICT  T WLD KHVVFG+VVEG DVVK ME  GS SG+T+ VV+I DCGEA
Sbjct:    6 PRVFFDVGFNNQPAGRVIFELRSDVVPKTAENFRVLCTKPKGEGFKGSVFHRIIPDFMCQGGDFTKGNGTGGKSIYGNKFPDENFILKHEHPGTLSMANAGPNTNGSQFFICTSKTAWLDGKHVVFGNVVEGMDVVKLMESKGSQSGKTSVVVSIMDCGEA 166

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BLAST of jgi.p|Trimin1|76850 vs. uniprot
Match: D7FHE4_ECTSI (Peptidyl-prolyl cis-trans isomerase n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7FHE4_ECTSI)

HSP 1 Score: 256 bits (654), Expect = 2.220e-82
Identity = 123/159 (77.36%), Postives = 134/159 (84.28%), Query Frame = 2

Query:  179 VFFDIDIDNKDAGRIVFELRKDVVPKTVENFRELCT-RPKGKGFKGSSFHRIIPQFMCQGGDFTKGNGTGGESIYGRTFPDENFQLKHTGGGILSMANAGPDTNGSQFFICTVATPWLDNKHVVFGSVVEGGDVVKKMEGVGSPSGRTAKVVTIRDCGE 652
            VFFDID   K+ GRI  ELR DVVPKT ENFR+LCT     KGFKGS FHRIIPQFMCQGGDFT G+GTGGESIYGRTFPDENF+L HTG GILSMANAGP+TNGSQFF+CTV  PWLD KHVVFGSVV+G DVVKK+E +GSPSG+T   VTI+DCGE
Sbjct:   21 VFFDIDAGGKEMGRITLELRADVVPKTAENFRQLCTGEGPVKGFKGSKFHRIIPQFMCQGGDFTAGDGTGGESIYGRTFPDENFELSHTGPGILSMANAGPNTNGSQFFLCTVDCPWLDGKHVVFGSVVDGMDVVKKLEALGSPSGKTKTAVTIKDCGE 179

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BLAST of jgi.p|Trimin1|76850 vs. uniprot
Match: A0A1Q9P4S5_HEILC (Peptidylprolyl isomerase n=1 Tax=Heimdallarchaeota archaeon (strain LC_2) TaxID=1841597 RepID=A0A1Q9P4S5_HEILC)

HSP 1 Score: 255 bits (652), Expect = 2.600e-82
Identity = 122/163 (74.85%), Postives = 135/163 (82.82%), Query Frame = 2

Query:  164 MANPKVFFDIDIDNKDAGRIVFELRKDVVPKTVENFRELCTRPKGKGFKGSSFHRIIPQFMCQGGDFTKGNGTGGESIYGRTFPDENFQLKHTGGGILSMANAGPDTNGSQFFICTVATPWLDNKHVVFGSVVEGGDVVKKMEGVGSPSGRTAKVVTIRDCGE 652
            M NPKVFFD+ I ++ AGRIV ELRKDVVPKT ENFR LCT  KG G+KGSSFHR+I QFMCQGGDFT  NGTGG+SIYG  FPDENF LKHTG G+LSMANAGP+TNGSQFF+CT+ T WLD KHVVFG+VVEG DVVK +E VGS SG T+K V I DCGE
Sbjct:    1 MTNPKVFFDMTIGDESAGRIVMELRKDVVPKTAENFRALCTGEKGFGYKGSSFHRVITQFMCQGGDFTNHNGTGGKSIYGNKFPDENFTLKHTGPGVLSMANAGPNTNGSQFFLCTIQTSWLDGKHVVFGNVVEGMDVVKTIEEVGSQSGSTSKKVVITDCGE 163

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BLAST of jgi.p|Trimin1|76850 vs. uniprot
Match: F2U0F9_SALR5 (Peptidyl-prolyl cis-trans isomerase n=1 Tax=Salpingoeca rosetta (strain ATCC 50818 / BSB-021) TaxID=946362 RepID=F2U0F9_SALR5)

HSP 1 Score: 255 bits (652), Expect = 2.600e-82
Identity = 121/163 (74.23%), Postives = 135/163 (82.82%), Query Frame = 2

Query:  164 MANPKVFFDIDIDNKDAGRIVFELRKDVVPKTVENFRELCTRPKGKGFKGSSFHRIIPQFMCQGGDFTKGNGTGGESIYGRTFPDENFQLKHTGGGILSMANAGPDTNGSQFFICTVATPWLDNKHVVFGSVVEGGDVVKKMEGVGSPSGRTAKVVTIRDCGE 652
            M+ PKV+FD+  +    GR+VFELR DVVPKT ENFR LCT  KG GFKGSSFHRIIP FMCQGGDFT+GNGTGG+SIYG  F DENF LKHTG GILSMANAGP+TNGSQFFICT  T WLD KHVVFGSVV+G DVV+KME +GS SG+T+K VTI DCG+
Sbjct:    1 MSRPKVYFDVTANGSPVGRVVFELRDDVVPKTAENFRALCTGEKGFGFKGSSFHRIIPGFMCQGGDFTRGNGTGGKSIYGEKFADENFTLKHTGPGILSMANAGPNTNGSQFFICTEKTGWLDGKHVVFGSVVDGMDVVRKMEALGSQSGKTSKTVTIADCGQ 163

The following BLAST results are available for this feature:

BLAST of jgi.p|Trimin1|76850 vs. uniprot

BLAST of jgi.p|Trimin1|76850 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 25


Match Name	E-value	Identity	Description
A0A835YXI4_9STRA	2.590e-149	100.00	Peptidyl-prolyl cis-trans isomerase n=1 Tax=Tribon...	[more]
A0A6H5KR31_9PHAE	4.100e-87	63.60	Peptidyl-prolyl cis-trans isomerase n=1 Tax=Ectoca...	[more]
A0A7S2P287_9STRA	6.170e-83	71.60	Peptidyl-prolyl cis-trans isomerase n=2 Tax=Leptoc...	[more]
C3XQD3_BRAFL	1.290e-82	74.23	Peptidyl-prolyl cis-trans isomerase n=3 Tax=Chorda...	[more]
UPI0012EDD9B8	1.290e-82	75.46	peptidyl-prolyl cis-trans isomerase A n=1 Tax=Anar...	[more]
A0A7S1D0F5_CYCTE	1.790e-82	72.02	Peptidyl-prolyl cis-trans isomerase n=2 Tax=Cyclop...	[more]
UPI001403BBF0	1.960e-82	75.16	peptidyl-prolyl cis-trans isomerase-like n=1 Tax=A...	[more]
D7FHE4_ECTSI	2.220e-82	77.36	Peptidyl-prolyl cis-trans isomerase n=1 Tax=Ectoca...	[more]
A0A1Q9P4S5_HEILC	2.600e-82	74.85	Peptidylprolyl isomerase n=1 Tax=Heimdallarchaeota...	[more]
F2U0F9_SALR5	2.600e-82	74.23	Peptidyl-prolyl cis-trans isomerase n=1 Tax=Salpin...	[more]

Pages

Alignments

The following features are aligned


Aligned Feature	Feature Type	Alignment Location
Contig_56	contig	Contig_56:33311..42305 +

Analyses

This mRNA is derived from or has results from the following analyses


Analysis Name	Date Performed
Diamond blastx: OGS1.0 vs UniRef90	2022-09-19
OGS1.0 of Tribonema minus UTEX_B_3156	2021-06-17

Properties


Property Name	Value
ProteomeId	Trimin1\|76850\|CE76849_1357
BRITE	ko00000,ko00001,ko01000,ko03110
KEGG Pathway	ko04020,ko04022,ko05012,ko05016,ko05145,map04020,map04022,map05012,map05016,map05145
KEGG ko	ko:K09565
EC	5.2.1.8
Description	peptidyl-prolyl cis-trans isomerase activity
COG category	O
Max annot lvl	2759\|Eukaryota
EggNOG OGs	COG0652@1\|root,KOG0865@2759\|Eukaryota
Evalue	8.83e-85
Seed ortholog	2880.D7FHE4
Hectar predicted targeting category	chloroplast
TranscriptId	77172
Track	FilteredModels1
ProteinId	76850

Relationships

This mRNA is a part of the following gene feature(s):


Feature Name	Unique Name	Species	Type	Position
jgi.p\|Trimin1\|76850	gene_14076	Tribonema minus UTEX_B_3156	gene	Contig_56 33311..42305 +

The following polypeptide feature(s) derives from this mRNA:


Feature Name	Unique Name	Species	Type	Position
jgi.p\|Trimin1\|76850	Trimin1\|76850\|CE76849_1357	Tribonema minus UTEX_B_3156	polypeptide	Contig_56 33321..41974 +

The following exon feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type	Position
exon_14076_1	exon_14076_1	Tribonema minus UTEX_B_3156	exon	Contig_56 33311..33488 +
exon_14076_2	exon_14076_2	Tribonema minus UTEX_B_3156	exon	Contig_56 33968..33998 +
exon_14076_3	exon_14076_3	Tribonema minus UTEX_B_3156	exon	Contig_56 35064..35194 +
exon_14076_4	exon_14076_4	Tribonema minus UTEX_B_3156	exon	Contig_56 37618..37663 +
exon_14076_5	exon_14076_5	Tribonema minus UTEX_B_3156	exon	Contig_56 38589..38661 +
exon_14076_6	exon_14076_6	Tribonema minus UTEX_B_3156	exon	Contig_56 39331..39344 +
exon_14076_7	exon_14076_7	Tribonema minus UTEX_B_3156	exon	Contig_56 41026..41138 +
exon_14076_8	exon_14076_8	Tribonema minus UTEX_B_3156	exon	Contig_56 41903..42305 +

The following five_prime_UTR feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type	Position
UTR5_14076	UTR5_14076	Tribonema minus UTEX_B_3156	five_prime_UTR	Contig_56 33311..33320 +

The following CDS feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type	Position
CDS_14076	CDS_14076	Tribonema minus UTEX_B_3156	CDS	Contig_56 33321..33488 +

The following three_prime_UTR feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type	Position
UTR3_14076	UTR3_14076	Tribonema minus UTEX_B_3156	three_prime_UTR	Contig_56 41975..42305 +

Sequences

The following sequences are available for this feature:

mRNA - spliced transcript sequence
protein sequence
mRNA from alignment at Contig_56:33311..42305+
coding sequence from alignment at Contig_56:33311..42305+

spliced messenger RNA

>mRNA_14076 ID=mRNA_14076|Name=jgi.p|Trimin1|76850|organism=Tribonema minus UTEX_B_3156 |type=mRNA|length=989bp|location=Sequence derived from alignment at Contig_56:33311..42305+ (Tribonema minus UTEX_B_3156 )|Notes=Excludes all bases but those of type(s): exon.  
AGCAAGCATCATGAGGTTCTTTGTCGCCGCTGCGTGCCTGCTGGCATCTC
CCGTGGCAGCATTCCTGCCCGTCTCAGGAGCGCTGTCCAGCGGGTCTTTC
ACTGGCGCGGCTATGGCTCACCGAAGCACATCAAGCAGCAGTGGCAGCAC
GCGTGTCATGCAGATGGCGAACCCCAAGGTTTTCTTTGACATCGACATTG
ACAACAAAGACGCCGGACGCATTGTGTTTGAGCTGCGCAAGGACGTGGTG
CCAAAAACGGTGGAGAACTTCCGGGAGCTGTGCACGCGGCCTAAGGGCAA
GGGGTTCAAGGGCTCCTCGTTCCACAGGATCATCCCTCAGTTCATGTGCC
AGGGCGGTGACTTCACCAAGGGCAACGGCACCGGCGGCGAGTCCATCTAC
GGCCGCACCTTCCCGGATGAGAACTTCCAGCTGAAGCACACTGGCGGTGG
CATCCTCAGCATGGCAAACGCTGGCCCCGACACCAACGGCAGCCAGTTCT
TCATCTGCACAGTCGCCACGCCGTGGCTCGACAACAAGCACGTTGTCTTC
GGGTCCGTGGTCGAGGGCGGCGACGTTGTCAAGAAGATGGAGGGCGTGGG
CTCCCCCAGCGGCCGCACGGCCAAGGTCGTCACCATCCGCGACTGCGGCG
AGGCATGAATTCATCACGAATTCATGAATTCATCACGCATTGCCAACGCA
AGTCGGTAGCAACCACCGCTGCCCCTGGAGGCCCCGCTGCTGAGCTTGTG
CTGCCCAGCCTTGCTGGTCGGGTGCATGAACGCTAGGCAGCCAGCAATGG
TGGTGAGGCACTTCTTGTGAAGCTGGCAGAGGCAGGCGCAACGCTTAGAA
CGGATTGACGAAAAATCGGTCAACTCGGCGGACATGCACACAACCTGAGC
ACACATATATACACTAAACAAAAAAACCGACGCCGGTGGTGGCGACCATG
TATTTGGAGTACAATAGCCACAGCATATGAAATCTTGGG

protein sequence of jgi.p|Trimin1|76850

>Trimin1|76850|CE76849_1357 ID=Trimin1|76850|CE76849_1357|Name=jgi.p|Trimin1|76850|organism=Tribonema minus UTEX_B_3156 |type=polypeptide|length=216bp
MRFFVAAACLLASPVAAFLPVSGALSSGSFTGAAMAHRSTSSSSGSTRVM
QMANPKVFFDIDIDNKDAGRIVFELRKDVVPKTVENFRELCTRPKGKGFK
GSSFHRIIPQFMCQGGDFTKGNGTGGESIYGRTFPDENFQLKHTGGGILS
MANAGPDTNGSQFFICTVATPWLDNKHVVFGSVVEGGDVVKKMEGVGSPS
GRTAKVVTIRDCGEA*

mRNA from alignment at Contig_56:33311..42305+

Legend: exonfive_prime_UTRpolypeptideCDSthree_prime_UTR

Hold the cursor over a type above to highlight its positions in the sequence below.

>mRNA_14076 ID=mRNA_14076|Name=jgi.p|Trimin1|76850|organism=Tribonema minus UTEX_B_3156 |type=mRNA|length=8995bp|location=Sequence derived from alignment at Contig_56:33311..42305+ (Tribonema minus UTEX_B_3156 )
AGCAAGCATCATGAGGTTCTTTGTCGCCGCTGCGTGCCTGCTGGCATCTC
CCGTGGCAGCATTCCTGCCCGTCTCAGGAGCGCTGTCCAGCGGGTCTTTC
ACTGGCGCGGCTATGGCTCACCGAAGCACATCAAGCAGCAGTGGCAGCAC
GCGTGTCATGCAGATGGCGAACCCCAAGGTACGCCAGGCTGATCCGCGTA
TCAGTCGTAGCCGTGTGCCCTATGCAATTCAGATAGTCTTACCAATTGGT
GTCCCAGTCGTGTGCATAGCGCTGTCTGAGGTGTGTGGATCTTATGTCAT
GTTCAAGTACGACGCCGCACCTCCAGTAGCGCGATCTTCAGGTCGCTGCG
AGCAGATTGCCAGCGAATGAATACCACTCATGCTCATTTGCTGGCCTGGT
TTGGACGCGCTTGCCTGGTGGTACACGCGCGCTGCCCGGAAGGTGCTTCA
AAGAATTTGCGGTTCAGATTGCTTGAGTGCTTGCAGTTACACTCACGGTG
CCGATGCCTTTAGCTAATATTTGAGCTTTTCGAAGTGCCTGGGATGCTGT
GTGCACACACACAAATAGAAGTTGCTCCTCGAAGCTTTCGTCATCGGTCG
CAGGCGCGTTGCAAGGGCTCATGTGCTGTGATGGCTTTGATCGTGTTGCT
TGTGCAGGTTTTCTTTGACATCGACATTGACAACAAAGGTGAGTGGTCGC
TGGCATTCAGCCTTAAACTGCCGATTGTACCTCACTTTACCAAATGCCAT
CGTATGGACCATGAAGGTCCCTGGATGTTGTGCACCCAGCTTTTGAAAGG
AGGTAGAAAGGAGGTAGTGGAGGTTTGTTTTGGTGCGAGTAAACAAAGAA
GGACTCATTTCAAGACAAGCGCGAAAGCTGGTCATTTATTTTGCGTTTTT
GTTTTTTTGGTGATAAACTGGTGGCAATGCAGGTCCGGCAAAGCCATCGT
GATGCACCAGCAGAACCCGCGAGTGACATGCGAACCTCTGTTCTGCTGCA
ACGCGAGCGCCGTGTTGCGCCTGATGTTCGCGTTCATACAAGAACTCAAT
GAACGCTTGACATCTAGCGCACCCGCTGTAATTTCGTCATAACAAGTTTG
CGAGAGGCGAGCCTCCTTCGATGAGTGCCTCGTCGGCATGAACATACTTG
AGGTTACACTCGCACGTATCTTCTACGCAGCTTCTCGATTGGGATTCCTG
CAGGTGCACCGTAGCAGTTTTGCTGCCCCGCACGAAGTGCGGTTACCACT
TTTGTAACTGTCACAGGCGCCGGACGCATTTTATTTGAGATGCACAAGGA
TTTGGTGCTGTTTCTGATTCAACCGGTGCCAAGCGCACTGCATTTGAGCT
GCGCAGGACATGGCGGTGGCTGTTGCCAGTTTTGTAACTGCCGCAGGCGT
CATCAAGCTCATTGTATCTGAGCACATGCCAGCGTTAACACAGTTGGAGC
TCAGTGGAGGCCTATCGGAAGCTGGGAGGCATATGGCCGCCTCAGCAGCT
GAAGCGCCTGACGCTGCGAGCATTTACAGGCCAAAGCAGCTGTGTAAACA
TGTGAGTGCCGTTCCATACTTGGAAACAAATCAAAAGATCATGGAGCTCT
AGGTGACAAGGTGTGGTCAGCCGTCAAATTGAATGCCTCCCACCAATAGC
CGTGGTCACCGCTGCTGCGGCCATTGGCCATGAGCCAGCCAGTGCCACCA
TGTTCACAGTAGTCAACAGGCTTTTGTACATGCCGTTTCTTAAACTGCCG
CAGACGCCGGACGCATTGTGTTTGAGCTGCGCAAGGACGTGGTGCCAAAA
ACGGTGGAGAACTTCCGGGAGCTGTGCACGCGGCCTAAGGGCAAGGGGTT
CAAGGGCTCCTCGTTCCACAGGATCATCCCTCAGGTGCATCCCCTTGTCA
CAGTGCTCAATGTCATAATATTGATTTTTAAATTTAGAGAACTTTCCGGA
GCTGTGCACGCGCGGCCAAAGGGCAAGGGGTTCAAGGGCTCCTGTTTCCA
AAGGATCATACCTCAGGTGCGTCTCTCTGTCACAGTGCTCAGTTTGGTGT
ACATATGATGTACACCCTCTCTCGTTGCCCAGGATCATTCCTCAGGTACG
TTTCTTTAGCCACAGTGCTCAATGTGATTAATCAAATATAGTTCAGATCC
AATCAGGTATGTGTGTATGTACACCTTTTCTCCCTGCGACACTGACGGCG
GCACAGATTAGATTGGCGTGGGCCCTGGTTATGCGGCACAACCTATCACT
CTGTAGCAGGTTCTATGAACACCACTTTGACGGCTGGCCGTACACGGCAG
TGCAGCAGGGCTGTGCCAGAATGCCTTAGGGTTAGGGTTAGGATTAGAGT
TAGCCTAACCCTGGCCTACATCAACAACAGACCGGGGGCCTAAGGCATAT
AGCGCAGGCGGCCACTAGTGACTGATGGATGGCAGGCTTGCGGCTAGCGA
ATCCTATCCCTGACCATCTCATTCAGTCAAGATTTTCACGAAATACTTCT
AGCTCAAGAGTTGACAATAACGTCTCATCTTACAAAAAGGAAAACGAGCA
ACAAACCTAATAGATCCCATTCAACTGCATGGCGACAGCGACAGCTGTCG
GGCTGCGTTCGAGATCTACACAAACGAAGCGCCACCTCGATACGGTCTCA
AGCCCAGCCATGAGAGGTGCAGCGTTTACTGTGTTCGCCGCACAGCGTGG
TCGGATGCAATAAGGCGTGCGCTGTAATTCAATACCTACTCAGGTGCTGC
GCTCAATACCCACCCAATGGTGCGGCGCAAAGGCACGCTTTGAAGCGTGT
GGTTAAAATTCACGCTTGTTCAGAGTGCCCCAGCTGCGCAGTGCAGTCGG
AGTAGCGGCGCGTCACTACGTGATGTGGGGTTTGAAGTTGATGGTCAGGG
TTGTCACTCTTTGTCGCGTACTGGATTTATATAATCGAATCAACTCGCCA
AGTAACAGAATACCAAGCTCGAGGTTGCTGCGTTTTGTTGATGAACCCTC
ATTGATGTCAGCATCGCGGCCCGGGGGTTGGAGGTGACCAATAGCATGAG
ACTTCTGCATTTGGTTGCCTTGAAGTACGAACCTCTATGGAAGGGGGCTG
CAACTGCAACATGCGCTCCGTTTCACTGACGAGAGCTTGCACTTCAGACA
AGGGATTTCAGTATCGCGGCTGCTGCTGTGCAATGAGGATCAGGAGTGAA
GTTGGGGTTAGGGTTAGTGCTGCACATCGAAGGAGAGCTTGTGGGCGGAT
CCATTGTTTTGTAGGTTGTGATTGTCTCTTGCACCGCTACCTGCTAAAAT
TTATGGAAACATATCAAAAGATCGTAGAGCTTCAAGTAGGTGACAAGGAG
TGGGTAGTTGTAGGGGATGATGCTTCTAAGCGGCGGCTGCGTCCAGCCAA
CTCTATGTGCTGGTGGCAAGCCTGGCGCTCATGAAGTATATGGAACAAGT
ACTTGAAGTGGTATGATGTACAGGAATGCCACATGTGCAAGCTGGCGGCT
GCATCCTGCGAACCCCATGGTTAGGTTTAGGGTAGGGTTAGGTTGGTGGC
AAGCCTGGCGCTATTGCTGCCGTTGCCTTTTAGGCTTCCCGTGTGATGTC
AAGTGCTGACTCAAGCTGGCGGCTGCGTCCTGCGAACCTAACCCTAACCC
TTATACTATGGTGGCAAGCCTGGCACTAGTGCTGCCATTGCCTTTCGGGC
TCCCCAAGTGATGTCAGTGGTCGAGCGCTGACTCATATTTATGTATATAC
TTGAAACTACATGCCACGCAGCTACGAAAAGAAAGGGCGCATGTAGCAGT
CAACGGTGGCGCTGGCTGCTCCCAGTCGTGCCTCTTGGGACATTGTATGC
CAGCATAATGAGTGTGTCACAGCGTTGTTTCACCCAAATTCTAAGCTTAG
GTCAGGCTGCTCAATTGTCGTTTGTGCATGTTCAGCATCGTAACCAGCAC
AGCGCTGGATGTCACCGAGATGACTGGAACTCATCAGTGCGGCGTAGTGC
CGATCCATGGTGTTAACTTCAGATCATTTGTCAACATGTGAATTGTCCTG
GCAGCATGCGTGAATGTGTGTTATGGCGCTGTATTCTGCGTGTTGCCTTA
CCTCATGCGCCGCGGCTGCGATCACGCCATGGACCCCCCGCCTTCGATCA
TACAGAAAGGGGTTGTGAAAGCCACCTCTGAATCTTCGTCGGAAAGCAAA
TACACACTGCAGTACATGCAATGGTGACAGACTACAATCATGCTTCTCCA
AGCCTATGTTATTGCAACGCCAACTCTCTGCCGTATCCTTGTGTCGTGCC
TGTGCAGTTCATGTGCCAGGGCGGTGACTTCACCAAGGGCAACGGCACCG
GCGGTGAGTGGCAGTTACAAACAAGGCAGTTACTCAGGACCCTCGCATCT
GTCCACCTCGCGCGGTAGGCGTGCAGTCCGCCTGTGCATGAGGGCCGCGT
ACAGCAAGGACAAGTTGCAGATGTAGAACAAGGAAGTTAGTGATGTCGGG
CACAGCAGGGGGGTGGGGGGGTGGGGGGCAATCAGGCTTTGTACACCACT
CAACGGGCGCATGCACGGTGTCCGCATGACCTCATCCCCTGTACCTCTGA
TGCCCTTAGCATAGAAGACGCACATTGCTGGCACGAGACAGCTGCATTTG
TAGCGCCAGCGGCCAGATTCGCTGAAACCCACAACTGACCTTGATTGCAT
GACCCTTTATTTTGGGGGGGGGGGGGGGGGGCATTTGCTGTGTGCCAGGA
TTCCGGCACTGAGGACTGATCCCAGCCCTCACTCAATGATCTGCATGTAT
GGCCGCTCCCTCCCTGGACGGATAACTCGATCCGACTTCTTACTTTTCAA
GGACATAAATTATTGTGCATACATGCATACATAGCGGCGGATAATAATTT
TCACCGACTTCTTACTTTTCATGGACATCAAGTATTGTGCATGCATAGTG
GCGGATAACAATTTATGAATGGATGGATGTGCGTTGTGCGGTTGGCTTCC
CACAGCGAATCCATTCTCGGTGACACCTTTCCTCGCGTACCGATTGCTGA
ATACATGTTTGGAGTGAATATCTTGTAATCATTTGTTGGTTTCAATTAGT
GATGAGGACACAGAGTTTCAGCGCAGGTGACTATACTCCAACTTCAATGG
TATCATGAGGTAATAATTTCTTGAAGTATACCTTCAGTGTATTTGGCTGT
TGTGCATTCCTCACTCACGTAGTGTCCATTTCTCGTTCACATGTTCATGA
ATTTGAATTGTGCTTTCACTGTCCGCAGGCGAGTCCATCTACGGCCGCAC
CTTCCCGGATGAGAACTTCCAGCTGAAGCACACTGGCGGTGGCATCCTCA
GGTACTGCATACTCTGAACTAGCATACATACCTTAGTTAACATCCATAAC
CTGACTGAGGATACATGTTCATGCCATCATGCCACTGACACAGGCTCCTG
CTGCGGGCGTAGTAGTGCCCTTTGGTGGTATGAAGCCGCTACTATGATGG
AGAACTGGTCAAATGGGTTTTGCACATTGTTGCTGCTGAGTCGTTTTTTG
TGCAAGTGCATTTGTGAAGGCGCAGTGATGCTGCAAGTGTGATTGTGTGT
GCGTGTGTGTGCGCGCGCGCGCGCATTTGCATCATTTCATTTGTCGCTGC
CAAGAGCGCATGATGCTGTAAAGTCAGCATAATGCATCATTTCAGTCGTC
GCTGTCAAGAGGTCCTGTGATGGAGCTGGTTGATCAGCAGAATTGCTCCA
AACTTTGCGCTTTGGATTTCCTGCTAAGCACTGCGGCCAGAGAAACATAG
GTAGGTGCCTTTTTGAGGTTGTAAGTGCGACAAGAACGAGGAGTGGTGCA
CATCATCTCAAAAACAAAGAAAGATTACCTTTGATCTTATGGAGTCTATT
TCCAGGGCTGCTTGCGCCCCTGTGTAACTCGTTTGTACTTGAAGCTCGCC
TGTGAGCTCACTCCTTTTCCCGTCCCCTCTCCTGCCTTCCCTTCTCTCCA
TGTTATGGCCGCTCCATCAGCATGGCAAACGCTGGTGAGTGCCGCTTCAC
GTGTGTACATCAACCATTAACTGCACTTATTATGGACTTGTCAATACGTA
AACGTGATACTTGTTGTTGCCTGCACATCTATAATGGGTACTTCTATATG
ACACTGCATTCGTACTGCGCATGGCGCTTGTACAGGCCACAACAGGAATT
ATGCAGGGTGCTATATCAAATATGCCCTGAACATGGCAGCATTGTACTTT
TTCGAGTACACAGACATCATAGAACTGTGCCTGCAACCCTGTAGCAGTAC
TTTTTATTAATTCTCGCTCAGGGCGCGAAAAAGCCCAGATGATTGGCATC
TAGCTGTAAGGAATCTACATGTCGTATGACAGTCTGAAAGTGTCGCAACG
ACAACCACTCAAACGCCGCCGCCGCCAAATGGCATCTCGGGGTCCTCCCC
TACGTCCTCCTCCATGTGCCCCCCCCCCCTGGATTCTGCCATGTGTGTCA
TGACACGGCCAGAGTACGCCATGTGGAGCGCTGCCGACAGTGCCGAGCGT
AAGCGCGCCAGGGCGATGCCCTTGAGAGCTTTAGGGCGCGCTCCTCCGGG
CACTGACATCCTGCTGGCATACTCCGTCGCCACAGCCTCCAGCAGCTTCC
GCCCCTGCTCCCCGATGCTGCCAAATGACCCTATTGCCAATGTGGCAAGT
TTGTAGCAATTCTGATCATAATGACCAGAATAGTAGCAGTACTCTTCCAG
CCTCCGAGCAAATAGCTGCACATAATTTGCAAAAGTTTGCGAACCTGAGG
TAGGTAGGTGTGCTTGAGGCGTGTGTCTCAGCACACGTAATGGATGCAGC
AATTGCTGGAGCTGGTGTCCGTGTCGTCTGTGCAGGCGCTGCTCTTGCTT
CTACGTTCAGCCCCATGTGCCATTCATACAGACACCACGCCCGGCGCGAT
GAAATACCCGGAGCCCCGCCATGTCCATTCATAGTCATGTACCGTGGTTT
CCGCTCAGCACCATACGCCAACAGGCGGCAAGTCTGTCCGCTGGGCAAGC
CAGCGCTTCTTGACAGCGATCCACTCTTGGTTGCCGTTTACAATACTGTC
TTGCGCTTAACCGCCAATCACAGTCGGTGACTGACTTGCGCCTTTTCACA
GCAAGCCATACAACCTCTGTCCACAATCATGGGAACCATTAATCACGCAG
CCCATCACCTCCGATTAAGCAGCCTGTTTGGCACAAACTTGCACTACTAT
GTATGTATTTATACAAACACCACGCCCTACTTGATTGAGGATTGTGCGCC
AAACGTCTGGGCAATTTATCATTCACACACATGAATTCACAGACATGAAC
TGCATCCCCTGTTCGCCCCCCCACCGCCGCCATGCTTCCGGTCCGTGCAC
GCCAGCGCCCCCGTTTGACAGCGAACCACATTCCGCCATTCATAATCATG
AAGTGCGCCTGTTGCTTGCCATGAACAATCATGAACTGCGCTGTCCGCCC
CCAGGCCCCAACAGCGACATCTTCTATCGCCTTTCACAGTCATTGAATGT
GAACTTATAAAATTGCCATTAACAATTATCAACTGTGCTGTCCGCCCCCA
GGCTCGTTTGTCATGCACGCCAGCGCCTTGACACCGCACCGTTCTTCGAT
CGCCATCTACAATCATGCGCTTTTGATTGCCATTCATAATCATGAACTGC
GCTGTTTTTTTACAGGCCCCGACACCAACGGCAGCCAGTTCTTCATCTGC
ACAGTCGCCACGCCGTGGCTCGACAACAAGCACGTTGTCTTCGGGTCCGT
GGTCGAGGGCGGCGACGTTGTCAAGAAGGTGCGCTGAGCACTGCCACGCT
TGTAGAACCACCTTTGTTAATTATTACTGTTATCATTGTGTTTGAAGGCC
ATGTTCGCTCACTGTTATTAGAGCTCAACGATCTTTTGAGTTGTTTCTCA
TTTTTCATTACTGTTATTATTGTGTTTGAAGGCCATGTTCGCTCAGTCAA
GGGCGGTGACGTCGTCAAGAAGGTGCGCTGAGCACTGCCACGCTTGCAGA
CCCAACCCGCGCTGTTCTGAACAAGTATGCGGGAAGCTTTTTGTAAATAT
TGCAAGGCTTGGCGACACTATGCGTACTCAAGTTGATGTGGTGAATATGG
TGTGCTGAGCAGTGCCACACTCGCAGACTGTTCTTAGACTGTTCTTGGGG
GCCATGGTTGCTCTCAGCCTTGAAGGCTCCGTGCGTGCAGGAATTGATGT
GGCGAAGAAGGTGCGCTGAGAAGCGCCATTGATGTAGACACACTGCATCT
GGCTCCGTAGTCAAAGGCAGCAGATATTCGTGACGAAGGTAAGCATAGTA
AGTGAGCAATTAATTTCATTGGTGCTCGCAATAAAAGACAGTCGCATACT
TGAACTGCCGTTACATCAAGAACTTAATGGAGCTGCGGCATGCCCATTAA
CCTCCGTCTATGAATTTGTGTGTCTTGCTGAGAAAAAAAAATGCATCCGC
TGCGACACGCGCACAAAAACGCTTGGCGACACCAAATGACCCAAGACCCT
GCATCACCCATCTTCTCTGTGTGCTGCCTTTTTGTTGCACAGATGGAGGG
CGTGGGCTCCCCCAGCGGCCGCACGGCCAAGGTCGTCACCATCCGCGACT
GCGGCGAGGCATGAATTCATCACGAATTCATGAATTCATCACGCATTGCC
AACGCAAGTCGGTAGCAACCACCGCTGCCCCTGGAGGCCCCGCTGCTGAG
CTTGTGCTGCCCAGCCTTGCTGGTCGGGTGCATGAACGCTAGGCAGCCAG
CAATGGTGGTGAGGCACTTCTTGTGAAGCTGGCAGAGGCAGGCGCAACGC
TTAGAACGGATTGACGAAAAATCGGTCAACTCGGCGGACATGCACACAAC
CTGAGCACACATATATACACTAAACAAAAAAACCGACGCCGGTGGTGGCG
ACCATGTATTTGGAGTACAATAGCCACAGCATATGAAATCTTGGG

Coding sequence (CDS) from alignment at Contig_56:33311..42305+

>mRNA_14076 ID=mRNA_14076|Name=jgi.p|Trimin1|76850|organism=Tribonema minus UTEX_B_3156 |type=CDS|length=648bp|location=Sequence derived from alignment at Contig_56:33311..42305+ (Tribonema minus UTEX_B_3156 )
ATGAGGTTCTTTGTCGCCGCTGCGTGCCTGCTGGCATCTCCCGTGGCAGC
ATTCCTGCCCGTCTCAGGAGCGCTGTCCAGCGGGTCTTTCACTGGCGCGG
CTATGGCTCACCGAAGCACATCAAGCAGCAGTGGCAGCACGCGTGTCATG
CAGATGGCGAACCCCAAGGTTTTCTTTGACATCGACATTGACAACAAAGA
CGCCGGACGCATTGTGTTTGAGCTGCGCAAGGACGTGGTGCCAAAAACGG
TGGAGAACTTCCGGGAGCTGTGCACGCGGCCTAAGGGCAAGGGGTTCAAG
GGCTCCTCGTTCCACAGGATCATCCCTCAGTTCATGTGCCAGGGCGGTGA
CTTCACCAAGGGCAACGGCACCGGCGGCGAGTCCATCTACGGCCGCACCT
TCCCGGATGAGAACTTCCAGCTGAAGCACACTGGCGGTGGCATCCTCAGC
ATGGCAAACGCTGGCCCCGACACCAACGGCAGCCAGTTCTTCATCTGCAC
AGTCGCCACGCCGTGGCTCGACAACAAGCACGTTGTCTTCGGGTCCGTGG
TCGAGGGCGGCGACGTTGTCAAGAAGATGGAGGGCGTGGGCTCCCCCAGC
GGCCGCACGGCCAAGGTCGTCACCATCCGCGACTGCGGCGAGGCATGA