mRNA_14047 (mRNA) Tribonema minus UTEX_B_3156

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview


Name	jgi.p\|Trimin1\|352831
Unique Name	mRNA_14047
Type	mRNA
Organism	Tribonema minus UTEX_B_3156 (Tribonema minus UTEX_B_3156 )

Homology

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BLAST of jgi.p|Trimin1|352831 vs. uniprot
Match: A0A836CLT8_9STRA (40S ribosomal protein S8 n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A836CLT8_9STRA)

HSP 1 Score: 410 bits (1054), Expect = 1.370e-144
Identity = 212/212 (100.00%), Postives = 212/212 (100.00%), Query Frame = 2

Query:   11 MGISRDSRHKRRETGGKRCQVRKKRKFELGRPAANTKMGATRIRTVRCRGGNLKFRALRLETGNYSWGTEVCTRKTRILDVVYNASNNELVRTKTLVKGAVVSIDATPFRQWYEAHYGIAIGVKKGKRAAAGKAAATTDEEAKKSDHVQRKLAARQKTRALDTLLDEQFASGRILACISSRPGQSGRCDGYILEGKELEFYQKILSRKKGKH 646
            MGISRDSRHKRRETGGKRCQVRKKRKFELGRPAANTKMGATRIRTVRCRGGNLKFRALRLETGNYSWGTEVCTRKTRILDVVYNASNNELVRTKTLVKGAVVSIDATPFRQWYEAHYGIAIGVKKGKRAAAGKAAATTDEEAKKSDHVQRKLAARQKTRALDTLLDEQFASGRILACISSRPGQSGRCDGYILEGKELEFYQKILSRKKGKH
Sbjct:    1 MGISRDSRHKRRETGGKRCQVRKKRKFELGRPAANTKMGATRIRTVRCRGGNLKFRALRLETGNYSWGTEVCTRKTRILDVVYNASNNELVRTKTLVKGAVVSIDATPFRQWYEAHYGIAIGVKKGKRAAAGKAAATTDEEAKKSDHVQRKLAARQKTRALDTLLDEQFASGRILACISSRPGQSGRCDGYILEGKELEFYQKILSRKKGKH 212

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BLAST of jgi.p|Trimin1|352831 vs. uniprot
Match: D7FHG3_ECTSI (40S ribosomal protein S8 n=2 Tax=Ectocarpus TaxID=2879 RepID=D7FHG3_ECTSI)

HSP 1 Score: 315 bits (807), Expect = 4.790e-107
Identity = 160/211 (75.83%), Postives = 180/211 (85.31%), Query Frame = 2

Query:   11 MGISRDSRHKRRETGGKRCQVRKKRKFELGRPAANTKMGATRIRTVRCRGGNLKFRALRLETGNYSWGTEVCTRKTRILDVVYNASNNELVRTKTLVKGAVVSIDATPFRQWYEAHYGIAIGVKKGKRAAAGKAAATTDEEAKKSDHVQRKLAARQKTRALDTLLDEQFASGRILACISSRPGQSGRCDGYILEGKELEFYQKILSRKKGK 643
            MGISRDSRHKRRETGG+R + RKKRKFE+GRPAANTK+G  R+  VRCRGGN+K+RALRL++GN+SWGTEVCTRKTRILDVVYNASNNELVRTKTLVK A+V +DA PF+ WYE HYG+ IG+KKGK     KAA   +E   KSDHV+RKLA RQ  R L TLLDEQ ASGR LACISSRPGQSGRCDGYILEGKELEFYQK+L++KK K
Sbjct:    1 MGISRDSRHKRRETGGRRSKYRKKRKFEMGRPAANTKLGHKRVHPVRCRGGNMKYRALRLDSGNFSWGTEVCTRKTRILDVVYNASNNELVRTKTLVKNAIVVVDAHPFKHWYENHYGVVIGLKKGK-----KAAPVEEEAVAKSDHVKRKLAKRQTDRTLSTLLDEQVASGRFLACISSRPGQSGRCDGYILEGKELEFYQKMLAKKKSK 206

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BLAST of jgi.p|Trimin1|352831 vs. uniprot
Match: A0A812SFI7_SYMMI (40S ribosomal protein S8 n=1 Tax=Symbiodinium microadriaticum TaxID=2951 RepID=A0A812SFI7_SYMMI)

HSP 1 Score: 308 bits (789), Expect = 2.830e-104
Identity = 152/210 (72.38%), Postives = 180/210 (85.71%), Query Frame = 2

Query:   11 MGISRDSRHKRRETGGKRCQVRKKRKFELGRPAANTKMGATRIRTVRCRGGNLKFRALRLETGNYSWGTEVCTRKTRILDVVYNASNNELVRTKTLVKGAVVSIDATPFRQWYEAHYGIAIGVKKGKRAAAGKAAATTDEEAKKSDHVQRKLAARQKTRALDTLLDEQFASGRILACISSRPGQSGRCDGYILEGKELEFYQKILSRKKG 640
            MGISRDSRHKRR TGG++  ++KKR++ELGRP ANTK+GA+RI TVRCRGGNLKFRA+RL+TGN+SWG+EVCTRKTR+LDVVYNASNNELVRTKTLVK +++ +DATPFR WYE HYG+ +GVKK K     K AA  ++  KKS  +QRKLA RQKTR LD  LD+ F+SGR+LACISSRPGQSGRCDGYILEGKEL+FY K+L +KKG
Sbjct:    1 MGISRDSRHKRRATGGRKANLKKKRQYELGRPPANTKLGASRIHTVRCRGGNLKFRAMRLDTGNFSWGSEVCTRKTRVLDVVYNASNNELVRTKTLVKNSIIQVDATPFRAWYEQHYGVKVGVKKAK-----KTAAEGEDTEKKSHSLQRKLAERQKTRTLDPALDDGFSSGRLLACISSRPGQSGRCDGYILEGKELDFYSKMLKKKKG 205

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BLAST of jgi.p|Trimin1|352831 vs. uniprot
Match: A0A2D4BEG8_PYTIN (40S ribosomal protein S8 n=1 Tax=Pythium insidiosum TaxID=114742 RepID=A0A2D4BEG8_PYTIN)

HSP 1 Score: 305 bits (781), Expect = 4.210e-103
Identity = 161/211 (76.30%), Postives = 175/211 (82.94%), Query Frame = 2

Query:   11 MGISRDSRHKRRETGGKRCQVRKKRKFELGRPAANTKMGATRIRTVRCRGGNLKFRALRLETGNYSWGTEVCTRKTRILDVVYNASNNELVRTKTLVKGAVVSIDATPFRQWYEAHYGIAIGVKKGKRAAAGKAAATTDEEAKKSDHVQRKLAARQKTRALDTLLDEQFASGRILACISSRPGQSGRCDGYILEGKELEFYQKILSRKKGK 643
            MGISRDSRHKRRETGGKR Q RKKRKFELGR  ANTK+G  R+ TVR RGGN KFRALRL+TGN+SWGTEV +RKTRILDVVYNASNNELVRTKT+VKG +VSIDATPFRQWYEAHYG  IG KK        A  T D+EAKKS HVQRK+A RQ+ R LD  LDEQFASGR+LA I+SRPGQSGR DGYILEGKELEFYQ+ L+ KK K
Sbjct:    1 MGISRDSRHKRRETGGKRKQYRKKRKFELGRQPANTKLGHKRVHTVRVRGGNTKFRALRLDTGNFSWGTEVLSRKTRILDVVYNASNNELVRTKTIVKGCIVSIDATPFRQWYEAHYGAKIGQKKN-------AVETADDEAKKSSHVQRKIANRQRDRVLDVKLDEQFASGRLLAAIASRPGQSGRADGYILEGKELEFYQRKLATKKSK 204

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BLAST of jgi.p|Trimin1|352831 vs. uniprot
Match: H3G699_PHYRM (40S ribosomal protein S8 n=2 Tax=Phytophthora TaxID=4783 RepID=H3G699_PHYRM)

HSP 1 Score: 302 bits (773), Expect = 6.480e-102
Identity = 161/210 (76.67%), Postives = 173/210 (82.38%), Query Frame = 2

Query:   14 GISRDSRHKRRETGGKRCQVRKKRKFELGRPAANTKMGATRIRTVRCRGGNLKFRALRLETGNYSWGTEVCTRKTRILDVVYNASNNELVRTKTLVKGAVVSIDATPFRQWYEAHYGIAIGVKKGKRAAAGKAAATTDEEAKKSDHVQRKLAARQKTRALDTLLDEQFASGRILACISSRPGQSGRCDGYILEGKELEFYQKILSRKKGK 643
            GISRDSRHKRRETGGKR Q RKKRKFELGR  A TK+G  R+ TVR RGG+LKFRAL LETGN+SWGTEVC RKTRILDVVYNASNNELVRTKTLVKGAVV IDATPFRQWYEAHYG+ IGVKK        A    +EE KKSDHV RKLAARQ+TR LD  +DEQ  SGR+LA ISSRPGQSGR DGY+LEGKELEFYQ+ L+ KK K
Sbjct:    1 GISRDSRHKRRETGGKRKQFRKKRKFELGRQPAATKLGGKRVHTVRVRGGHLKFRALHLETGNFSWGTEVCARKTRILDVVYNASNNELVRTKTLVKGAVVLIDATPFRQWYEAHYGVKIGVKKN-------AEKQEEEEVKKSDHVLRKLAARQRTRVLDPKIDEQVTSGRLLAVISSRPGQSGRADGYLLEGKELEFYQRKLATKKSK 203

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BLAST of jgi.p|Trimin1|352831 vs. uniprot
Match: A0A8K1C734_PYTOL (Uncharacterized protein n=1 Tax=Pythium oligandrum TaxID=41045 RepID=A0A8K1C734_PYTOL)

HSP 1 Score: 302 bits (773), Expect = 6.950e-102
Identity = 161/211 (76.30%), Postives = 174/211 (82.46%), Query Frame = 2

Query:   11 MGISRDSRHKRRETGGKRCQVRKKRKFELGRPAANTKMGATRIRTVRCRGGNLKFRALRLETGNYSWGTEVCTRKTRILDVVYNASNNELVRTKTLVKGAVVSIDATPFRQWYEAHYGIAIGVKKGKRAAAGKAAATTDEEAKKSDHVQRKLAARQKTRALDTLLDEQFASGRILACISSRPGQSGRCDGYILEGKELEFYQKILSRKKGK 643
            MGISRDSRHKRRETGGKR Q RKKRKFE GR  ANTK+G  R+ TVR RGG+ KFRALRL+TGN+SWGTEV  RKTRILDVVYNASNNELVRTKTLVKGA+V +DATPFRQWYEAHYG  IG KK        AAA T +E KKSDHV RK+AARQ+TR LD  LDEQFASGR+ A ISSRPGQSGR DGYILEGKELEFYQ+ L+ KK K
Sbjct:    1 MGISRDSRHKRRETGGKRKQYRKKRKFESGRQPANTKLGHKRVHTVRVRGGHTKFRALRLDTGNFSWGTEVTARKTRILDVVYNASNNELVRTKTLVKGAIVLVDATPFRQWYEAHYGTKIGQKKN-------AAAETADETKKSDHVVRKIAARQRTRVLDQKLDEQFASGRLFAAISSRPGQSGRADGYILEGKELEFYQRKLATKKSK 204

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BLAST of jgi.p|Trimin1|352831 vs. uniprot
Match: A0A6V2QD30_HETAK (40S ribosomal protein S8 n=2 Tax=Sar TaxID=2698737 RepID=A0A6V2QD30_HETAK)

HSP 1 Score: 301 bits (770), Expect = 1.990e-101
Identity = 156/209 (74.64%), Postives = 173/209 (82.78%), Query Frame = 2

Query:   11 MGISRDSRHKRRETGGKRCQVRKKRKFELGRPAANTKMGATRIRTVRCRGGNLKFRALRLETGNYSWGTEVCTRKTRILDVVYNASNNELVRTKTLVKGAVVSIDATPFRQWYEAHYGIAIGVKKGKRAAAGKAAATTDEEAKKSDHVQRKLAARQKTRALDTLLDEQFASGRILACISSRPGQSGRCDGYILEGKELEFYQKILSRKK 637
            MGISRDSRHKRR TGGKR Q RKKRKFELGR +ANTK+GA R+  VRC GGN KFRA+RLETG +SWGTE  +RKT+ILDVVYNASNNELVRTKTLVKGA++SIDA P RQWYE HYG+ IG KKGK+AAA       +E   KS HV RK A R KTR LD LLDEQFA+GR+LA ISSRPGQSGRCDGY+LEGKELEFYQK L++KK
Sbjct:    1 MGISRDSRHKRRHTGGKRAQFRKKRKFELGRQSANTKLGAKRVHEVRCMGGNKKFRAIRLETGTFSWGTEAISRKTKILDVVYNASNNELVRTKTLVKGAIISIDAAPLRQWYEQHYGVQIGKKKGKKAAA------EEEAVAKSSHVARKQAQRCKTRTLDPLLDEQFANGRLLASISSRPGQSGRCDGYVLEGKELEFYQKQLAKKK 203

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BLAST of jgi.p|Trimin1|352831 vs. uniprot
Match: A0A7S2USH6_9STRA (40S ribosomal protein S8 n=1 Tax=Fibrocapsa japonica TaxID=94617 RepID=A0A7S2USH6_9STRA)

HSP 1 Score: 300 bits (768), Expect = 9.800e-101
Identity = 156/212 (73.58%), Postives = 172/212 (81.13%), Query Frame = 2

Query:   11 MGISRDSRHKRRETGGKRCQVRKKRKFELGRPAANTKMGATRIRTVRCRGGNLKFRALRLETGNYSWGTEVCTRKTRILDVVYNASNNELVRTKTLVKGAVVSIDATPFRQWYEAHYGIAIGVKKGKRAAAGKAAATTDEEAKKSDHVQRKLAARQKTRALDTLLDEQFASGRILACISSRPGQSGRCDGYILEGKELEFYQKILSRKKGKH 646
            MGISRDSRHKRR TGGKR + RKKRKFE+GRPAANTK+G  R+  VRC GGN+K+RA+RLE G YSWGTE  +RK RILDVVYNASNNELVRTKTLVK AVV IDA PF+ WYEAHYG+ IG KKGKR    K     DE+AKKS HVQRK+A RQK R L   LD+QF  GR+LACISSRPGQSGR DGYILEGKELEFYQK+L+RKK  H
Sbjct:   21 MGISRDSRHKRRHTGGKRAKFRKKRKFEMGRPAANTKLGTKRVHPVRCMGGNMKYRAMRLEAGTYSWGTEAISRKARILDVVYNASNNELVRTKTLVKNAVVLIDAHPFKAWYEAHYGVVIGKKKGKRMP--KKDEADDEDAKKSSHVQRKIAKRQKDRTLMQNLDDQFVGGRLLACISSRPGQSGRADGYILEGKELEFYQKMLARKKKGH 230

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BLAST of jgi.p|Trimin1|352831 vs. uniprot
Match: A0A662X634_9STRA (40S ribosomal protein S8 n=1 Tax=Nothophytophthora sp. Chile5 TaxID=2483409 RepID=A0A662X634_9STRA)

HSP 1 Score: 300 bits (769), Expect = 2.120e-100
Identity = 158/211 (74.88%), Postives = 173/211 (81.99%), Query Frame = 2

Query:   11 MGISRDSRHKRRETGGKRCQVRKKRKFELGRPAANTKMGATRIRTVRCRGGNLKFRALRLETGNYSWGTEVCTRKTRILDVVYNASNNELVRTKTLVKGAVVSIDATPFRQWYEAHYGIAIGVKKGKRAAAGKAAATTDEEAKKSDHVQRKLAARQKTRALDTLLDEQFASGRILACISSRPGQSGRCDGYILEGKELEFYQKILSRKKGK 643
            MGISRDSRHKRRETGGKR Q RKKRKFELGR   NTK+G  R+  VR RGG++KFRAL LETGN+SWGTEV  RKTRILDVVYNASNNELVRTKTLVKGAVV +DATPFRQWYEAHYG+ IGVKK        A    +EE KKSDHV RKLA+RQ+TR LD  +DEQF SGR+LA ISSRPGQSGR DGY+LEGKELEFYQ+ L+ KK K
Sbjct:    1 MGISRDSRHKRRETGGKRKQFRKKRKFELGRQPGNTKLGGKRVHAVRVRGGHMKFRALHLETGNFSWGTEVSARKTRILDVVYNASNNELVRTKTLVKGAVVLVDATPFRQWYEAHYGVKIGVKKN-------AEKVEEEEVKKSDHVLRKLASRQRTRELDVKIDEQFMSGRLLAVISSRPGQSGRADGYLLEGKELEFYQRKLATKKSK 204

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BLAST of jgi.p|Trimin1|352831 vs. uniprot
Match: A0A662XWQ4_9STRA (40S ribosomal protein S8 n=1 Tax=Nothophytophthora sp. Chile5 TaxID=2483409 RepID=A0A662XWQ4_9STRA)

HSP 1 Score: 301 bits (770), Expect = 3.700e-100
Identity = 158/211 (74.88%), Postives = 173/211 (81.99%), Query Frame = 2

Query:   11 MGISRDSRHKRRETGGKRCQVRKKRKFELGRPAANTKMGATRIRTVRCRGGNLKFRALRLETGNYSWGTEVCTRKTRILDVVYNASNNELVRTKTLVKGAVVSIDATPFRQWYEAHYGIAIGVKKGKRAAAGKAAATTDEEAKKSDHVQRKLAARQKTRALDTLLDEQFASGRILACISSRPGQSGRCDGYILEGKELEFYQKILSRKKGK 643
            MGISRDSRHKRRETGGKR Q RKKRKFE+GR   NTK+G  R+  VR RGG++KFRAL LETGN+SWGTEV  RKTRILDVVYNASNNELVRTKTLVKGAVV +DATPFRQWYEAHYG+ IGVKK        A    +EE KKSDHV RKLAARQ+TR LD  +DEQF SGR+LA ISSRPGQSGR DGY+LEGKELEFYQ+ L+ KK K
Sbjct:    1 MGISRDSRHKRRETGGKRKQFRKKRKFEIGRQPGNTKLGGKRVHAVRVRGGHMKFRALHLETGNFSWGTEVSARKTRILDVVYNASNNELVRTKTLVKGAVVLVDATPFRQWYEAHYGVKIGVKKN-------AEKVEEEEVKKSDHVLRKLAARQRTRELDVKIDEQFMSGRLLAVISSRPGQSGRADGYLLEGKELEFYQRKLATKKSK 204

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BLAST of jgi.p|Trimin1|352831 vs. uniprot
Match: A0A835ZEQ1_9STRA (HMG box domain-containing protein n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A835ZEQ1_9STRA)

HSP 1 Score: 1434 bits (3712), Expect = 0.000e+0
Identity = 919/919 (100.00%), Postives = 919/919 (100.00%), Query Frame = 1

Query:    1 MEHEADSARPGAKRSAEGGSXXXXXXXXXXXXXXXXXXXXXHQGENQHKGSGAKPQGIGNLRTEAQAVKYYTDDNGFRQVPPYVHEFQTFAKDRWLRRSVDDVYTAEFAAETRLXXXXXXXXXXXXXXXXXXSAYYAAAVAGGRITVNGAIVPRDYRVEAGDLLSHRVHRHELPAAGGAVEVVAETDEVLVANKPAGLPVHPCGAYRYNTLVCVLAHQRPALPQLHICHRLDRLTSGIVILAKSAQKAAAVCARVRSASAQKTYLARVKGRFGVAFPPALCWDGQGDAPPAYWRKHARHDSNGGXXXXXXXXXXXXSXXXQDGAVGXXXXXXXXXXXXXXXGCKVDGCSAXXXXXXXXXXXXXXXXXXXXXXXXXXGQSALSIDTEEVEVCAPVRVVSYRASTYACGGGGADXXXXXGKSAVTRVRALRYDAASDTTLVACAPREGRTHQLRLHLRWLGHPIANDPCYGGALFCADAAGRARAEAARAWLRRRGCPCPADTGAEPEEEAADGGGGVRGGTDAXXXXXXXXXXXXXXXXXTDTSGGSADVHGDSAGADAAEARLLQVLRAGYREGESEESFVRRTCRHCFGRSAPAGSTGGATTEAAAMQASAQSXXXTKDVXXXXXTAHDESMTKRSAGEDAAAEXXXXXXXXXXXALPTAVLPDSPRAAAGVPLPLVAAAVSGAPPVDAAADECXXXXXXXXXXXXXXXXXXXXXXXXMEMSMQALTRSPGIWLHALRYSDEGWSYETAPPKWATETGWGGVEPQEVKQEALRPPRKGNGGNAGSCGFEEEFKLLKKKQAPSAAPAAPQAKPKPANAMAPQDGDRVEKAMKFVIHKKTKPPAEPRPPTNGFFKYAELMRPIITKICDDASDPDVKVNQTQVSKIASLMWKELTEDQKRAYKAVAKADWDVKQAKAAAK 2757
            MEHEADSARPGAKRSAEGGSXXXXXXXXXXXXXXXXXXXXXHQGENQHKGSGAKPQGIGNLRTEAQAVKYYTDDNGFRQVPPYVHEFQTFAKDRWLRRSVDDVYTAEFAAETRLXXXXXXXXXXXXXXXXXXSAYYAAAVAGGRITVNGAIVPRDYRVEAGDLLSHRVHRHELPAAGGAVEVVAETDEVLVANKPAGLPVHPCGAYRYNTLVCVLAHQRPALPQLHICHRLDRLTSGIVILAKSAQKAAAVCARVRSASAQKTYLARVKGRFGVAFPPALCWDGQGDAPPAYWRKHARHDSNGGXXXXXXXXXXXXSXXXQDGAVGXXXXXXXXXXXXXXXGCKVDGCSAXXXXXXXXXXXXXXXXXXXXXXXXXXGQSALSIDTEEVEVCAPVRVVSYRASTYACGGGGADXXXXXGKSAVTRVRALRYDAASDTTLVACAPREGRTHQLRLHLRWLGHPIANDPCYGGALFCADAAGRARAEAARAWLRRRGCPCPADTGAEPEEEAADGGGGVRGGTDAXXXXXXXXXXXXXXXXXTDTSGGSADVHGDSAGADAAEARLLQVLRAGYREGESEESFVRRTCRHCFGRSAPAGSTGGATTEAAAMQASAQSXXXTKDVXXXXXTAHDESMTKRSAGEDAAAEXXXXXXXXXXXALPTAVLPDSPRAAAGVPLPLVAAAVSGAPPVDAAADECXXXXXXXXXXXXXXXXXXXXXXXXMEMSMQALTRSPGIWLHALRYSDEGWSYETAPPKWATETGWGGVEPQEVKQEALRPPRKGNGGNAGSCGFEEEFKLLKKKQAPSAAPAAPQAKPKPANAMAPQDGDRVEKAMKFVIHKKTKPPAEPRPPTNGFFKYAELMRPIITKICDDASDPDVKVNQTQVSKIASLMWKELTEDQKRAYKAVAKADWDVKQAKAAAK
Sbjct:    1 MEHEADSARPGAKRSAEGGSXXXXXXXXXXXXXXXXXXXXXHQGENQHKGSGAKPQGIGNLRTEAQAVKYYTDDNGFRQVPPYVHEFQTFAKDRWLRRSVDDVYTAEFAAETRLXXXXXXXXXXXXXXXXXXSAYYAAAVAGGRITVNGAIVPRDYRVEAGDLLSHRVHRHELPAAGGAVEVVAETDEVLVANKPAGLPVHPCGAYRYNTLVCVLAHQRPALPQLHICHRLDRLTSGIVILAKSAQKAAAVCARVRSASAQKTYLARVKGRFGVAFPPALCWDGQGDAPPAYWRKHARHDSNGGXXXXXXXXXXXXSXXXQDGAVGXXXXXXXXXXXXXXXGCKVDGCSAXXXXXXXXXXXXXXXXXXXXXXXXXXGQSALSIDTEEVEVCAPVRVVSYRASTYACGGGGADXXXXXGKSAVTRVRALRYDAASDTTLVACAPREGRTHQLRLHLRWLGHPIANDPCYGGALFCADAAGRARAEAARAWLRRRGCPCPADTGAEPEEEAADGGGGVRGGTDAXXXXXXXXXXXXXXXXXTDTSGGSADVHGDSAGADAAEARLLQVLRAGYREGESEESFVRRTCRHCFGRSAPAGSTGGATTEAAAMQASAQSXXXTKDVXXXXXTAHDESMTKRSAGEDAAAEXXXXXXXXXXXALPTAVLPDSPRAAAGVPLPLVAAAVSGAPPVDAAADECXXXXXXXXXXXXXXXXXXXXXXXXMEMSMQALTRSPGIWLHALRYSDEGWSYETAPPKWATETGWGGVEPQEVKQEALRPPRKGNGGNAGSCGFEEEFKLLKKKQAPSAAPAAPQAKPKPANAMAPQDGDRVEKAMKFVIHKKTKPPAEPRPPTNGFFKYAELMRPIITKICDDASDPDVKVNQTQVSKIASLMWKELTEDQKRAYKAVAKADWDVKQAKAAAK 919

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BLAST of jgi.p|Trimin1|352831 vs. uniprot
Match: D8LB48_ECTSI (Pseudouridine synthase n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D8LB48_ECTSI)

HSP 1 Score: 236 bits (601), Expect = 1.550e-63
Identity = 184/465 (39.57%), Postives = 241/465 (51.83%), Query Frame = 1

Query:  127 QGENQHKGSGAKPQGIGNLRTEAQAVKYYTDDNGFRQVPPYVHEFQTFAKDRWLRRSVDDVYTAEFAAETRLXXXXXXXXXXXXXXXXXXSAYYAAAVAGGRITVNGAIVPRDYRVEAGDLLSHRVHRHELPAAGGAVEVVAETDEVLVANKPAGLPVHPCGAYRYNTLVCVLAHQRPALPQLHICHRLDRLTSGIVILAKSAQKAAAVCARVRSASAQKTYLARVKGRFGVAFPPALCWDGQGDAPPAYWRKHARHDSNGGXXXXXXXXXXXXSXXXQDGAVGXXXXXXXXXXXXXXXGCKV---------------------DGCSAXXXXXXXXXXXXXXXXXXXXXXXXXXGQSALSIDTE--EVEVCAPVRVVSYRASTYACGGGGADXXXXXGKSAVTRVRALRYDAASDTTLVACAPREGRTHQLRLHLRWLGHPIANDPCYGGALFCADAAGRARAE 1452
            +G+   KG   + +    L   A+  +YY DD+G R+V PY+++FQT AK+RWL R+V DV++AEF  E R                    ++Y  AV GG +TVNG  V  DY ++  DL+ ++ HRHE P  GG + +V+E+ E LV +KP  +P+HPCG+YR+NTL  ++  QRP L  L +CHRLDRLTSG+ I AK+A++A  +  ++ S   +KTYLARV G FG   P     D +    P+             XXXXXXXXXXXX XXX      XXXXXXXXXXXXXXX                         +G                             G      + E   V V  P+RV+  +   Y C           GK A T VR + YD ASDT++V C P  GRTHQ+RLHL+W GHPIANDPCYGG L   +   + RAE
Sbjct:   56 RGKRPRKGDAKRERKKKALAHAAEKCEYYVDDHGLRRVRPYIYDFQTHAKERWLGRTVVDVFSAEFGGEAR--------------------SHYENAVRGGLLTVNGNKVGVDYELQNSDLICNKTHRHEPPVCGGDIPIVSESAEELVVDKPCTVPIHPCGSYRFNTLFYIMHRQRPDLT-LRVCHRLDRLTSGLTIFAKTAERAGVIQKQIGSGRTRKTYLARVSGDFGQRLP----LDRRKQGSPSXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXPATDELWWRYESLGEGVVKGRLRSSGAISGEEGGLAESSASSGGVGSGGAGGEKEGVTVRVNCPIRVLDPKHGVYEC--------HPSGKEAQTVVRKVGYDTASDTSVVECTPVHGRTHQIRLHLQWAGHPIANDPCYGGELHFGNPEAKRRAE 487

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BLAST of jgi.p|Trimin1|352831 vs. uniprot
Match: A0A329RSN8_9STRA (PseudoU_synth_2 domain-containing protein n=9 Tax=Phytophthora TaxID=4783 RepID=A0A329RSN8_9STRA)

HSP 1 Score: 216 bits (549), Expect = 6.240e-58
Identity = 152/442 (34.39%), Postives = 206/442 (46.61%), Query Frame = 1

Query:  133 ENQHKGSGAKPQGIGNLRTEAQAVKYYTDDNGFRQVPPYVHEFQTFAKDRWLRRSVDDVYTAEFAAETRLXXXXXXXXXXXXXXXXXXSAYYAAAVAGGRITVNGAIVPRDYRVEAGDLLSHRVHRHELPAAGGAVEVVAETDEVLVANKPAGLPVHPCGAYRYNTLVCVLAHQRPALPQLHICHRLDRLTSGIVILAKSAQKAAAVCARVRSASAQKTYLARVKGRFGVAFPPALCWDGQGDAPPAYWRKHARHDSNGGXXXXXXXXXXXXSXXXQDGAVGXXXXXXXXXXXXXXXGCKVDGCSAXXXXXXXXXXXXXXXXXXXXXXXXXXGQSALSIDTEEVEVCAPVRVVSYRASTYACGGGGADXXXXXGKSAVTRVRALRYDAASDTTLVACAPREGRTHQLRLHLRWLGHPIANDPCYGGALFCADAAGRARAEAA 1458
            E Q K   +K       R +A+A KY +  NG+R V PYV+EF+T+AK RW  R + +++T EF A +                      YY  A+A GRI+VN  IVP D  ++ GDL+ H  HRHE P +G  V VV E D+++V +KP  +P HPCGAYR+N+L  ++   RP LPQL+I HRLDRLTSG+++LAK++ KA A+ + +    A KTYLARV+G+F    P  L                                    +   QD  V                    + C A                                 D   + +  P+R +S R   + C           GK + T VR +R D    T+L+ C P  GRTHQ+RLHLR +G PIANDPCYGG L   ++A RA   AA
Sbjct:   45 ERQAKKRKSKQDAKSAKRFQAEAPKY-SFANGYRMVEPYVYEFRTYAKARWFDRELLEIFTKEFGANS--------------------PEYYKFAIASGRISVNHKIVPADTIIKNGDLIIHAAHRHEPPVSGEEVPVVYEDDDLIVVSKPPSMPTHPCGAYRHNSLHTIVQATRPDLPQLNIVHRLDRLTSGVMLLAKNSAKAKALSSIIADRQASKTYLARVRGQF----PDLL------------------------------------NSEIQDKLVNQAK----------------ENCPASIITFP---------------------------DEGAILISCPLRCLSARDGVWEC--------HEEGKPSETLVRLVRTDKC--TSLMKCKPVTGRTHQIRLHLRLIGFPIANDPCYGGELHFGESAERAEEIAA 372

[Close]

BLAST of jgi.p|Trimin1|352831 vs. uniprot
Match: A0A485KXJ1_9STRA (Aste57867_13100 protein n=1 Tax=Aphanomyces stellatus TaxID=120398 RepID=A0A485KXJ1_9STRA)

HSP 1 Score: 191 bits (484), Expect = 1.280e-49
Identity = 101/231 (43.72%), Postives = 134/231 (58.01%), Query Frame = 1

Query:  157 AKPQGIGNLRTEAQAVKYYTDDNGFRQVPPYVHEFQTFAKDRWLRRSVDDVYTAEFAAETRLXXXXXXXXXXXXXXXXXXSAYYAAAVAGGRITVNGAIVPRDYRVEAGDLLSHRVHRHELPAAGGAVEVVAETDEVLVANKPAGLPVHPCGAYRYNTLVCVLAHQRPALPQLHICHRLDRLTSGIVILAKSAQKAAAVCARVRSASAQKTYLARVKGRFGVAFPPALCWD 849
            AK + +     +   V  Y   +G+R V PYV +FQT AK RW  R++ D++T EF + T                     AYY  A+  GRIT+NG +V     V+ GDLL H+ HRHE P +G  +++  ET  +LV NKPAG+P HPCGAYR+N+L  +L H RP +P LHI HRLDRLTSG+VILAK++ KA  +   +   +A KTYLARV G F  A   +   D
Sbjct:    7 AKRRKVSAKEVDEDPVAEYEVRDGYRYVKPYVFKFQTHAKQRWFGRTLIDIFTTEFGSFT--------------------PAYYELAIQTGRITLNGKMVSPTTTVKNGDLLCHKTHRHEPPVSGEEIQIAHETPNLLVVNKPAGIPTHPCGAYRFNSLHHILLHMRPDIPHLHIVHRLDRLTSGVVILAKNSTKARDLSTTIADRTASKTYLARVLGMFPAALTDSWLTD 217

[Close]

BLAST of jgi.p|Trimin1|352831 vs. uniprot
Match: W4GUU9_9STRA (PseudoU_synth_2 domain-containing protein n=2 Tax=Aphanomyces astaci TaxID=112090 RepID=W4GUU9_9STRA)

HSP 1 Score: 191 bits (486), Expect = 1.510e-49
Identity = 99/220 (45.00%), Postives = 136/220 (61.82%), Query Frame = 1

Query:  157 AKPQGIGNLRTEAQAVKYYTDDNGFRQVPPYVHEFQTFAKDRWLRRSVDDVYTAEFAAETRLXXXXXXXXXXXXXXXXXXSAYYAAAVAGGRITVNGAIVPRDYRVEAGDLLSHRVHRHELPAAGGAVEVVAETDEVLVANKPAGLPVHPCGAYRYNTLVCVLAHQRPALPQLHICHRLDRLTSGIVILAKSAQKAAAVCARVRSASAQKTYLARVKGRF 816
            AK + + +   E  A +Y   D G+R V PYV  F+T AK RW  R++ +++T EF + +                      YYA A+  GRIT+NG + P    V+ GDLL H+ HRHE P +G  +E+  ET ++LV +KPAG+P HPCGAYR+N+L  +L H RP +P+LH+ HRLDRLTSG+VILAK+  KA A+ A +   +A KTYLARV+G F
Sbjct:   15 AKRRKVASHANEVLATEYEVRD-GYRYVKPYVFAFETHAKQRWFGRTLLEIFTTEFGSFS--------------------PEYYALAIDTGRITLNGKLTPPTTVVKNGDLLCHKTHRHEPPVSGDTIEIAHETPDLLVVSKPAGVPTHPCGAYRFNSLHFILLHMRPDIPKLHVVHRLDRLTSGVVILAKTPSKARALSASIADRTASKTYLARVRGSF 213

[Close]

BLAST of jgi.p|Trimin1|352831 vs. uniprot
Match: G4YVW7_PHYSP (PseudoU_synth_2 domain-containing protein n=4 Tax=Phytophthora TaxID=4783 RepID=G4YVW7_PHYSP)

HSP 1 Score: 190 bits (483), Expect = 3.340e-49
Identity = 101/217 (46.54%), Postives = 137/217 (63.13%), Query Frame = 1

Query:  190 EAQAVKYYTDDNGFRQVPPYVHEFQTFAKDRWLRRSVDDVYTAEFAAETRLXXXXXXXXXXXXXXXXXXSAYYAAAVAGGRITVNGAIVPRDYRVEAGDLLSHRVHRHELPAAGGAVEVVAETDEVLVANKPAGLPVHPCGAYRYNTLVCVLAHQRPALPQLHICHRLDRLTSGIVILAKSAQKAAAVCARVRSASAQKTYLARVKGRFGVAFPPAL 840
            +A+A KY +  NG+R V PYV+EF+TFAK RW  R + +++T EF A +                      YY  A+A GRI+VN  IVP D  ++ GDL+ H  HRHE P +G  V VV E D+++V +KP  +P HPCGAYR+N+L  ++   RP LPQL+I HRLDRLTSG+V+LAK+A KA A+ A + +  A K YLARV+G+F     PA+
Sbjct:   37 QAEAPKY-SFANGYRMVEPYVYEFRTFAKARWFDRQLLEIFTKEFGANS--------------------PEYYKFAIASGRISVNHKIVPADTVIKNGDLIIHTAHRHEPPVSGEEVSVVYEDDDLIVVSKPPSMPTHPCGAYRHNSLHSIVQATRPDLPQLNIVHRLDRLTSGVVLLAKNAAKAKALSAIIANRQASKMYLARVRGQFPDLLDPAV 232

[Close]

BLAST of jgi.p|Trimin1|352831 vs. uniprot
Match: A0A2P4WXF4_9STRA (RNA pseudouridylate synthase n=1 Tax=Phytophthora palmivora var. palmivora TaxID=611791 RepID=A0A2P4WXF4_9STRA)

HSP 1 Score: 189 bits (481), Expect = 1.030e-48
Identity = 104/228 (45.61%), Postives = 140/228 (61.40%), Query Frame = 1

Query:  133 ENQHKGSGAKPQGIGNLRTEAQAVKYYTDDNGFRQVPPYVHEFQTFAKDRWLRRSVDDVYTAEFAAETRLXXXXXXXXXXXXXXXXXXSAYYAAAVAGGRITVNGAIVPRDYRVEAGDLLSHRVHRHELPAAGGAVEVVAETDEVLVANKPAGLPVHPCGAYRYNTLVCVLAHQRPALPQLHICHRLDRLTSGIVILAKSAQKAAAVCARVRSASAQKTYLARVKGRF 816
            E Q K   +K       R +A+A KY +  NG+R V PYV+EF+TFAK RW  R + +++T EF A +                      YY  A+A GRI+VN  IVP D  ++ GDL+ H  HRHE P +G  V VV E D+++V +KP  +P HPCGAYR+N+L  ++   RP LPQL+I HRLDRLTSG+V+LAK+A KA A+ + +    A KTYLARV+G+F
Sbjct:   40 ERQAKKRKSKRDAKNANRFQAEAPKY-SFANGYRMVEPYVYEFRTFAKARWFDRELLEIFTKEFGANS--------------------PEYYEFAIASGRISVNHKIVPADTIIKNGDLIIHTAHRHEPPVSGEEVPVVYEDDDLIVVSKPPSMPTHPCGAYRHNSLHTIVQATRPDLPQLNIVHRLDRLTSGVVLLAKNATKAKALSSIIADRQASKTYLARVRGQF 246

[Close]

BLAST of jgi.p|Trimin1|352831 vs. uniprot
Match: A0A6H5KK40_9PHAE (PseudoU_synth_2 domain-containing protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KK40_9PHAE)

HSP 1 Score: 189 bits (479), Expect = 1.240e-48
Identity = 98/235 (41.70%), Postives = 140/235 (59.57%), Query Frame = 1

Query:  127 QGENQHKGSGAKPQGIGNLRTEAQAVKYYTDDNGFRQVPPYVHEFQTFAKDRWLRRSVDDVYTAEFAAETRLXXXXXXXXXXXXXXXXXXSAYYAAAVAGGRITVNGAIVPRDYRVEAGDLLSHRVHRHELPAAGGAVEVVAETDEVLVANKPAGLPVHPCGAYRYNTLVCVLAHQRPALPQLHICHRLDRLTSGIVILAKSAQKAAAVCARVRSASAQKTYLARVKGRFGVAFP 831
            +G+   KG   + +    L   ++  +YY D +G R+V PY++ FQT AK+RWL R+V DV++AEF  E R                    ++Y  A+ GG +TVNG  V  DY ++  DL+ +R HRHE P  GG + +V E+ E LV +KP  +P+HPCG+YR+NTL  ++  QRP L  L +CHRLDRLTSG+ I AK+A++A  +  ++     +KTYLARV G FG   P
Sbjct:   36 RGKRPRKGDAKRERKKKALAHASEKCEYYVDGHGLRRVRPYIYNFQTHAKERWLGRTVVDVFSAEFGGEPR--------------------SHYENAIRGGLLTVNGNKVGVDYELQNSDLICNRTHRHEPPVCGGDIPIVFESAEELVVDKPCTVPIHPCGSYRFNTLFYIMHRQRPDLT-LRVCHRLDRLTSGLTIFAKTAERAGVIQKQIGLGRTRKTYLARVSGDFGQRLP 249

[Close]

BLAST of jgi.p|Trimin1|352831 vs. uniprot
Match: A0A6G0XGG3_9STRA (PseudoU_synth_2 domain-containing protein n=1 Tax=Aphanomyces euteiches TaxID=100861 RepID=A0A6G0XGG3_9STRA)

HSP 1 Score: 186 bits (473), Expect = 4.240e-48
Identity = 94/202 (46.53%), Postives = 128/202 (63.37%), Query Frame = 1

Query:  211 YTDDNGFRQVPPYVHEFQTFAKDRWLRRSVDDVYTAEFAAETRLXXXXXXXXXXXXXXXXXXSAYYAAAVAGGRITVNGAIVPRDYRVEAGDLLSHRVHRHELPAAGGAVEVVAETDEVLVANKPAGLPVHPCGAYRYNTLVCVLAHQRPALPQLHICHRLDRLTSGIVILAKSAQKAAAVCARVRSASAQKTYLARVKGRF 816
            Y   +G+R V PYV +FQT+AK+RW  R+V +++T EF + +                      YYA A+  GR+T+NGA       V+ GDLL H+ HRHE P +G  +E+  ET ++LV +KPAG+P HPCGAYR+N+L  +L H RP +P LHI HRLDRLTSG+VILAK++  A  + A +   +A KTYLARV+G F
Sbjct:   24 YEVRDGYRYVKPYVFKFQTYAKERWFGRTVINIFTTEFGSFS--------------------PEYYALAIETGRVTLNGARTTATTVVKNGDLLCHKTHRHEPPVSGETIEIAHETPDLLVVSKPAGIPTHPCGAYRFNSLHYILLHMRPNIPHLHIVHRLDRLTSGVVILAKNSNTARKLSACIADRTASKTYLARVRGTF 205

[Close]

BLAST of jgi.p|Trimin1|352831 vs. uniprot
Match: A0A024UVZ1_9STRA (PseudoU_synth_2 domain-containing protein n=2 Tax=Aphanomyces invadans TaxID=157072 RepID=A0A024UVZ1_9STRA)

HSP 1 Score: 187 bits (474), Expect = 6.000e-48
Identity = 96/204 (47.06%), Postives = 127/204 (62.25%), Query Frame = 1

Query:  211 YTDDNGFRQVPPYVHEFQTFAKDRWLRRSVDDVYTAEFAAETRLXXXXXXXXXXXXXXXXXXSAYYAAAVAGGRITVNGAIVPRDYRVEAGDLLSHRVHRHELPAAGGAVEVVAETDEVLVANKPAGLPVHPCGAYRYNTLVCVLAHQRPALPQLHICHRLDRLTSGIVILAKSAQKAAAVCARVRSASAQKTYLARVKGRFGV 822
            Y    G+R V PYV  FQT AK RW  R++ +++TAEF + +                      YYA A+  GRIT+NG +VP    V+ GDLL H+ HRHE P +G  +++  ET ++LV NKPAG+P HPCGAYR+N+L  +L H RP +P+LHI HRLDRLTSG+VILAK+   A  +   +   +A KTYLARV+G F V
Sbjct:   29 YVVREGYRYVNPYVFGFQTHAKQRWFGRTLLEIFTAEFGSFS--------------------PEYYALAIESGRITLNGNLVPPTTVVKNGDLLCHKTHRHEPPVSGDDIQIAHETVDLLVVNKPAGVPTHPCGAYRFNSLHYILMHMRPDIPKLHIVHRLDRLTSGVVILAKNPSTARTLSTCIADRTASKTYLARVRGAFPV 212

The following BLAST results are available for this feature:

BLAST of jgi.p|Trimin1|352831 vs. uniprot
BLAST of jgi.p|Trimin1|352831 vs. uniprot

BLAST of jgi.p|Trimin1|352831 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 25


Match Name	E-value	Identity	Description
A0A836CLT8_9STRA	1.370e-144	100.00	40S ribosomal protein S8 n=1 Tax=Tribonema minus T...	[more]
D7FHG3_ECTSI	4.790e-107	75.83	40S ribosomal protein S8 n=2 Tax=Ectocarpus TaxID=...	[more]
A0A812SFI7_SYMMI	2.830e-104	72.38	40S ribosomal protein S8 n=1 Tax=Symbiodinium micr...	[more]
A0A2D4BEG8_PYTIN	4.210e-103	76.30	40S ribosomal protein S8 n=1 Tax=Pythium insidiosu...	[more]
H3G699_PHYRM	6.480e-102	76.67	40S ribosomal protein S8 n=2 Tax=Phytophthora TaxI...	[more]
A0A8K1C734_PYTOL	6.950e-102	76.30	Uncharacterized protein n=1 Tax=Pythium oligandrum...	[more]
A0A6V2QD30_HETAK	1.990e-101	74.64	40S ribosomal protein S8 n=2 Tax=Sar TaxID=2698737...	[more]
A0A7S2USH6_9STRA	9.800e-101	73.58	40S ribosomal protein S8 n=1 Tax=Fibrocapsa japoni...	[more]
A0A662X634_9STRA	2.120e-100	74.88	40S ribosomal protein S8 n=1 Tax=Nothophytophthora...	[more]
A0A662XWQ4_9STRA	3.700e-100	74.88	40S ribosomal protein S8 n=1 Tax=Nothophytophthora...	[more]

Pages

BLAST of jgi.p|Trimin1|352831 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 25


Match Name	E-value	Identity	Description
A0A835ZEQ1_9STRA	0.000e+0	100.00	HMG box domain-containing protein n=1 Tax=Tribonem...	[more]
D8LB48_ECTSI	1.550e-63	39.57	Pseudouridine synthase n=1 Tax=Ectocarpus siliculo...	[more]
A0A329RSN8_9STRA	6.240e-58	34.39	PseudoU_synth_2 domain-containing protein n=9 Tax=...	[more]
A0A485KXJ1_9STRA	1.280e-49	43.72	Aste57867_13100 protein n=1 Tax=Aphanomyces stella...	[more]
W4GUU9_9STRA	1.510e-49	45.00	PseudoU_synth_2 domain-containing protein n=2 Tax=...	[more]
G4YVW7_PHYSP	3.340e-49	46.54	PseudoU_synth_2 domain-containing protein n=4 Tax=...	[more]
A0A2P4WXF4_9STRA	1.030e-48	45.61	RNA pseudouridylate synthase n=1 Tax=Phytophthora ...	[more]
A0A6H5KK40_9PHAE	1.240e-48	41.70	PseudoU_synth_2 domain-containing protein n=1 Tax=...	[more]
A0A6G0XGG3_9STRA	4.240e-48	46.53	PseudoU_synth_2 domain-containing protein n=1 Tax=...	[more]
A0A024UVZ1_9STRA	6.000e-48	47.06	PseudoU_synth_2 domain-containing protein n=2 Tax=...	[more]

Pages

Alignments

The following features are aligned


Aligned Feature	Feature Type	Alignment Location
Contig_133	contig	Contig_133:270220..273441 -

Analyses

This mRNA is derived from or has results from the following analyses


Analysis Name	Date Performed
Diamond blastx: OGS1.0 vs UniRef90	2022-09-19
OGS1.0 of Tribonema minus UTEX_B_3156	2021-06-17

Properties


Property Name	Value
ProteomeId	Trimin1\|352831\|estExt_Genemark1.C_Ctg_1330039
BRITE	br01610,ko00000,ko00001,ko00002,ko03011
KEGG Module	M00177,M00179
KEGG Pathway	ko03010,map03010
KEGG ko	ko:K02995
GOs	GO:0000184,GO:0000313,GO:0000462,GO:0000956,GO:0002164,GO:0002181,GO:0002182,GO:0002376,GO:0002520,GO:0003674,GO:0003676,GO:0003723,GO:0003729,GO:0003735,GO:0005198,GO:0005488,GO:0005575,GO:0005618,GO:0005622,GO:0005623,GO:0005634,GO:0005654,GO:0005730,GO:0005737,GO:0005783,GO:0005829,GO:0005840,GO:0005844,GO:0005886,GO:0005911,GO:0006139,GO:0006364,GO:0006396,GO:0006401,GO:0006402,GO:0006412,GO:0006413,GO:0006414,GO:0006518,GO:0006605,GO:0006612,GO:0006613,GO:0006614,GO:0006725,GO:0006807,GO:0006810,GO:0006886,GO:0006996,GO:0007275,GO:0008104,GO:0008150,GO:0008152,GO:0009056,GO:0009057,GO:0009058,GO:0009059,GO:0009506,GO:0009507,GO:0009532,GO:0009536,GO:0009547,GO:0009570,GO:0009790,GO:0009791,GO:0009792,GO:0009892,GO:0009987,GO:0010467,GO:0010468,GO:0010605,GO:0010629,GO:0012505,GO:0015031,GO:0015833,GO:0015935,GO:0016020,GO:0016043,GO:0016070,GO:0016071,GO:0016072,GO:0019222,GO:0019439,GO:0019538,GO:0022607,GO:0022613,GO:0022618,GO:0022626,GO:0022627,GO:0030054,GO:0030097,GO:0030312,GO:0030490,GO:0030684,GO:0030686,GO:0031974,GO:0031981,GO:0032501,GO:0032502,GO:0032991,GO:0033036,GO:0033365,GO:0034470,GO:0034613,GO:0034622,GO:0034641,GO:0034645,GO:0034655,GO:0034660,GO:0035166,GO:0035167,GO:0042254,GO:0042255,GO:0042274,GO:0042788,GO:0042886,GO:0043009,GO:0043043,GO:0043170,GO:0043226,GO:0043227,GO:0043228,GO:0043229,GO:0043231,GO:0043232,GO:0043233,GO:0043253,GO:0043603,GO:0043604,GO:0043933,GO:0044085,GO:0044237,GO:0044238,GO:0044248,GO:0044249,GO:0044260,GO:0044265,GO:0044267,GO:0044270,GO:0044271,GO:0044391,GO:0044422,GO:0044424,GO:0044428,GO:0044434,GO:0044435,GO:0044444,GO:0044445,GO:0044446,GO:0044464,GO:0045047,GO:0045184,GO:0046483,GO:0046700,GO:0046907,GO:0048513,GO:0048519,GO:0048534,GO:0048542,GO:0048569,GO:0048731,GO:0048732,GO:0048856,GO:0050789,GO:0050794,GO:0051179,GO:0051234,GO:0051641,GO:0051649,GO:0051726,GO:0055044,GO:0060255,GO:0065003,GO:0065007,GO:0070013,GO:0070727,GO:0070925,GO:0070972,GO:0071702,GO:0071704,GO:0071705,GO:0071826,GO:0071840,GO:0071944,GO:0072594,GO:0072599,GO:0072657,GO:0090150,GO:0090304,GO:0097159,GO:1901360,GO:1901361,GO:1901363,GO:1901564,GO:1901566,GO:1901575,GO:1901576,GO:1990904
Preferred name	RPS8
Description	structural constituent of ribosome
COG category	J
Max annot lvl	2759\|Eukaryota
EggNOG OGs	COG2007@1\|root,KOG3283@2759\|Eukaryota
Evalue	6.98e-108
Seed ortholog	2880.D7FHG3
Hectar predicted targeting category	other localisation
Ec32 ortholog description	Ribosomal protein S8e/ribosomal biogenesis NSA2
Ec32 ortholog	Ec-25_002510.1
TranscriptId	353153
Track	FilteredModels1
ProteinId	352831

Relationships

This mRNA is a part of the following gene feature(s):


Feature Name	Unique Name	Species	Type	Position
jgi.p\|Trimin1\|352831	gene_14047	Tribonema minus UTEX_B_3156	gene	Contig_133 270220..273441 -

The following polypeptide feature(s) derives from this mRNA:


Feature Name	Unique Name	Species	Type	Position
jgi.p\|Trimin1\|352831	Trimin1\|352831\|estExt_Genemark1.C_Ctg_1330039	Tribonema minus UTEX_B_3156	polypeptide	Contig_133 270220..273431 -

The following exon feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type	Position
exon_14047_6	exon_14047_6	Tribonema minus UTEX_B_3156	exon	Contig_133 270220..270306 -
exon_14047_5	exon_14047_5	Tribonema minus UTEX_B_3156	exon	Contig_133 270829..271005 -
exon_14047_4	exon_14047_4	Tribonema minus UTEX_B_3156	exon	Contig_133 271671..271834 -
exon_14047_3	exon_14047_3	Tribonema minus UTEX_B_3156	exon	Contig_133 272516..272591 -
exon_14047_2	exon_14047_2	Tribonema minus UTEX_B_3156	exon	Contig_133 273015..273145 -
exon_14047_1	exon_14047_1	Tribonema minus UTEX_B_3156	exon	Contig_133 273428..273441 -

The following CDS feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type	Position
CDS_14047	CDS_14047	Tribonema minus UTEX_B_3156	CDS	Contig_133 273428..273431 -

The following five_prime_UTR feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type	Position
UTR5_14047	UTR5_14047	Tribonema minus UTEX_B_3156	five_prime_UTR	Contig_133 273432..273441 -

Sequences

The following sequences are available for this feature:

mRNA - spliced transcript sequence
protein sequence
mRNA from alignment at Contig_133:270220..273441-
coding sequence from alignment at Contig_133:270220..273441-

spliced messenger RNA

>mRNA_14047 ID=mRNA_14047|Name=jgi.p|Trimin1|352831|organism=Tribonema minus UTEX_B_3156 |type=mRNA|length=649bp|location=Sequence derived from alignment at Contig_133:270220..273441- (Tribonema minus UTEX_B_3156 )|Notes=Excludes all bases but those of type(s): exon.  
AGGGGACGCCATGGGGATATCTCGTGACTCTCGGCACAAGCGCCGCGAGA
CTGGCGGCAAGCGCTGCCAGGTACGGAAAAAGCGCAAGTTTGAACTGGGG
CGGCCCGCCGCCAACACAAAGATGGGCGCCACTCGCATCCGCACGGTGCG
CTGCCGAGGCGGGAACCTCAAGTTCCGCGCGCTGCGCCTGGAGACCGGCA
ACTACTCATGGGGCACTGAGGTCTGCACGCGCAAGACGCGCATCCTGGAC
GTCGTGTACAACGCGTCCAACAACGAGCTGGTGCGCACCAAGACGCTGGT
CAAGGGCGCCGTCGTCTCCATCGACGCGACGCCGTTCCGCCAGTGGTACG
AGGCGCACTACGGCATAGCCATTGGCGTCAAGAAGGGCAAGAGGGCCGCC
GCCGGCAAGGCCGCCGCGACCACGGACGAGGAGGCCAAGAAGAGTGACCA
CGTGCAGCGCAAGCTGGCCGCGCGGCAGAAGACGCGCGCGCTCGACACGC
TGCTTGACGAGCAGTTTGCCAGCGGCCGCATCCTCGCGTGCATCTCGTCG
CGCCCCGGGCAGAGTGGGCGCTGTGATGGTTACATTTTGGAGGGCAAGGA
GCTCGAGTTCTACCAGAAGATACTGTCACGCAAAAAGGGCAAGCACTGA

protein sequence of jgi.p|Trimin1|352831

>Trimin1|352831|estExt_Genemark1.C_Ctg_1330039 ID=Trimin1|352831|estExt_Genemark1.C_Ctg_1330039|Name=jgi.p|Trimin1|352831|organism=Tribonema minus UTEX_B_3156 |type=polypeptide|length=213bp
MGISRDSRHKRRETGGKRCQVRKKRKFELGRPAANTKMGATRIRTVRCRG
GNLKFRALRLETGNYSWGTEVCTRKTRILDVVYNASNNELVRTKTLVKGA
VVSIDATPFRQWYEAHYGIAIGVKKGKRAAAGKAAATTDEEAKKSDHVQR
KLAARQKTRALDTLLDEQFASGRILACISSRPGQSGRCDGYILEGKELEF
YQKILSRKKGKH*

mRNA from alignment at Contig_133:270220..273441-

Legend: exonfive_prime_UTRpolypeptideCDS

Hold the cursor over a type above to highlight its positions in the sequence below.

>mRNA_14047 ID=mRNA_14047|Name=jgi.p|Trimin1|352831|organism=Tribonema minus UTEX_B_3156 |type=mRNA|length=3222bp|location=Sequence derived from alignment at Contig_133:270220..273441- (Tribonema minus UTEX_B_3156 )
AGGGGACGCCATGGGTGAGTACTAATTGCAGTTCATTTGTCCTGCAGTAA
AGCGGTGCGTGGCTGTGCGAGTTGGTGTACCTCAGGTAGAAACTTGGCTG
CTCTTTGTCTGAGTCCAGTGGGTGTGCTGATTCATCGATTGGACCAATGC
AGATGTGCGACTTCCGTCGTGCTCTATGGCGTGCTCTAGCACAATGCACG
TGATGAATTTAAGTCCAGTACAGTACAATACAGCACTGCCGGCGGTGGCG
ACAGTCTTGATCTCTGTGCTGAGAAACCCGTGCAATTCTGATGCAGGGAT
ATCTCGTGACTCTCGGCACAAGCGCCGCGAGACTGGCGGCAAGCGCTGCC
AGGTACGGAAAAAGCGCAAGTTTGAACTGGGGCGGCCCGCCGCCAACACA
AAGATGGGCGCCACTCGCATCCGCACGGTGAGTTTGACCAGCGCATCACG
CAGTGCATCACCTTGTGCATGCTGATGGCAGACAATGGCAGCAGGTTCAG
GGCACTGTCATCATGGCGCACGCTATGACGACATTCACTGCACGTGAATT
GTGCCTTTTCGACAGAGTTTGCCTGCCTGTGAGCGTGCCAGACGGGGCGG
TCTTCATCAGAGGCAGCGTGGTCAGTTTATGGACCCCTTATCACCAGCAT
CTCTTTCATCGCTGAGAGGCATCAGTCGGCCCGCAGGGCTACGCTCTGGC
AACTGCCGGCCAGCTGTTGCTGCATACGGACAGCAGCTGCTGTCGCTGCT
GCTGCGGCTCTGCTGCGCGAAGCCCCCGTTGCCCCAGCAGTCGCTTCCGT
TGTATCTAATTCAACTGCTGATCGTCTACCGTGCTGGCGCGCCGCTGCAG
GTGCGCTGCCGAGGCGGGAACCTCAAGTTCCGCGCGCTGCGCCTGGAGAC
CGGCAACTACTCATGGGGCACTGAGGGTGAGGCCGCAGCGCTCCACACAC
ATAAGCAAGCTATAGCTTTCGTGAAAGCTCTCTCTGTCGCCATACTCGTA
CATGCATCCCTGCACGTGCTTGTGCTCGGTGCCAATTAGGCGCTCACGCG
TTGAGCTGCAGCTGGTGATGCATGGCATGATACGATACCCTGCCTGCCTG
TGCATGAGTCGCGCGAGGCACACGCAAACGACGACGCTGCGGCGTGACGC
ATCTATAGTGCTGTACGCCACTCCAGGTTTGACGTGCTTTAAAGTACGTA
CTTCAAAGTATGCACTGTACTTCAGTAGCATCAACCGCCACTCTCATGCA
CTGGTGCACCGCGCTCTCCGCGCGCGCGCTCCCCGTCGCGCGCACCAGTG
TGCACTGCATGCAACGCGCATCCCGGACATCGCATACAACGCCTCCAACG
AATGGGGCGTACCCTCTGTTGCTCGTTTAAGCTCATACTTCACCGCTGTA
CCAATGTGCGAGTCAATGCTGTCCGCGCGTGCTCGCCCGCGTCGCGAGCA
CGCGCAGTCTGCACGCGCAAGACTGGCATCCTGGACGTCGCTTACAACGC
GTCCAAACACCTAGTAGTGTACCTCCTGTTGCATACATTTCAGTGCGTTA
CCGTGCTTGCGTCAACGCTGCACGTGTGCGCTTGTCGTGCATCATGCCGC
GCCACAGTCTGCACGCGCAAGACGCGCATCCTGGACGTCGTGTACAACGC
GTCCAACAACGAGCTGGTGCGCACCAAGACGCTGGTCAAGGGCGCCGTCG
TCTCCATCGACGCGACGCCGTTCCGCCAGTGGTACGAGGCGCACTACGGC
ATAGCCATTGGCGTCAAGAAGGTACAAGGCTTGGCGGTATACATTTATAC
GTCATATTACTTGTGTTGCGCGGCGCATGCGCATGCATGCTTTGCGTCGC
CCTGGCATCAGGGTGAGAGTGCAATCGACTCCGCCGCTGCACACAGCCGT
GCCCTGCCCCGCCTCACTGTCCCTTGCTGCCCCGCAAATGGTCGGTGTTC
TCCGCTCGTGTGAGGACATCAGCGGCAGAGTTCGCTGCAAGGCGTGCTGG
CAGTATGACGCTAGCAGCACGCACACGTGGCGGCAGTGACGCGGGCCGCT
GATGCGGGTTCGCTCGTTTGTTGGAAATCCTTCATGTGCTGTTGCACCGA
CAGAGGCGCAGCATTCGATGGTGTGCGCGCGTCAATGCCACGCTTGCCTG
CTTCGTGCGTGAGGCCGAAGGCAAAGCTCGGCTCAGTCACACCTTCTCGC
ATCTGTGCGGGGCGCTCTGCTGCCTGGAAGCCTGTGCTTCTGCTGCGTCC
GTGAAGGCACATCTGCTGCTGCTGCTGCTGCTGCTGCCTCGCCGAGCGCT
AAAGCAAAATACTACGCTGCAAGCGCCATGCCGCACGCCAACGCGGTCAA
GCCGGCACGTACCAACAAACCCGCCGCGACGCGCAGTGACCGCGGCCGCT
CACTCACCCCCTCTCCGCATGCGACACGGCGCGCAGGGCAAGAGGGCCGC
CGCCGGCAAGGCCGCCGCGACCACGGACGAGGAGGCCAAGAAGAGTGACC
ACGTGCAGCGCAAGCTGGCCGCGCGGCAGAAGACGCGCGCGCTCGACACG
CTGCTTGACGAGCAGTTTGCCAGCGGCCGCATCCTCGCGTGCATCTCGTC
GCGCCCCGGGCAGGTGAGCGCTGCTGAGCGCTGCGTGCCGCACGGCCGCA
CGGCCGCGGCAGCGGTCGGAATGCGGTGGCGCAATCGAGCGGTGGGCGGT
GCGCGCTGCAGCGTGCCCTTGCTACGACGGCCCTGTTGTGCTGTTGACAC
GCATTTACGCGCGCATGCGGCTCTCAGTGCGTATCGCGGGCGCATGAGCG
CTGCCGCCGCACCACATGACCCCCCCGGAGCTCTGGAAGACCGCTCGGCT
GGTTTGCAGAATCAAAGTGCTTGCGATTTTATTCCTCCACACCAGGTCCA
TGTGCCTGAAAGGATGTTGTTGTGCAGATGGGATGTGAAGATCTTGTGAA
CGCCGGTTTGTTTCATCAGGCGCGATGAGATGCCGCTCCTCTAGAATCTA
GATGTGCTTGTCTAGTGCAGTGCAGGCTTGGCCTGCACCACCGCTCAGCC
AAGTGTCCACGCCGCACACCACCCCCCACTGCTCCCCGCTGGTTACTTGG
CTGAGCTGTCTTCCCGCTGTTGCTCGCTGCCGCAGAGTGGGCGCTGTGAT
GGTTACATTTTGGAGGGCAAGGAGCTCGAGTTCTACCAGAAGATACTGTC
ACGCAAAAAGGGCAAGCACTGA

Coding sequence (CDS) from alignment at Contig_133:270220..273441-

>mRNA_14047 ID=mRNA_14047|Name=jgi.p|Trimin1|352831|organism=Tribonema minus UTEX_B_3156 |type=CDS|length=639bp|location=Sequence derived from alignment at Contig_133:270220..273441- (Tribonema minus UTEX_B_3156 )
ATGGGGATATCTCGTGACTCTCGGCACAAGCGCCGCGAGACTGGCGGCAA
GCGCTGCCAGGTACGGAAAAAGCGCAAGTTTGAACTGGGGCGGCCCGCCG
CCAACACAAAGATGGGCGCCACTCGCATCCGCACGGTGCGCTGCCGAGGC
GGGAACCTCAAGTTCCGCGCGCTGCGCCTGGAGACCGGCAACTACTCATG
GGGCACTGAGGTCTGCACGCGCAAGACGCGCATCCTGGACGTCGTGTACA
ACGCGTCCAACAACGAGCTGGTGCGCACCAAGACGCTGGTCAAGGGCGCC
GTCGTCTCCATCGACGCGACGCCGTTCCGCCAGTGGTACGAGGCGCACTA
CGGCATAGCCATTGGCGTCAAGAAGGGCAAGAGGGCCGCCGCCGGCAAGG
CCGCCGCGACCACGGACGAGGAGGCCAAGAAGAGTGACCACGTGCAGCGC
AAGCTGGCCGCGCGGCAGAAGACGCGCGCGCTCGACACGCTGCTTGACGA
GCAGTTTGCCAGCGGCCGCATCCTCGCGTGCATCTCGTCGCGCCCCGGGC
AGAGTGGGCGCTGTGATGGTTACATTTTGGAGGGCAAGGAGCTCGAGTTC
TACCAGAAGATACTGTCACGCAAAAAGGGCAAGCACTGA