mRNA_14045 (mRNA) Tribonema minus UTEX_B_3156

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
Namejgi.p|Trimin1|154361
Unique NamemRNA_14045
TypemRNA
OrganismTribonema minus UTEX_B_3156 (Tribonema minus UTEX_B_3156 )
Homology
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BLAST of jgi.p|Trimin1|154361 vs. uniprot
Match: A0A835ZDD8_9STRA (Uncharacterized protein (Fragment) n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A835ZDD8_9STRA)

HSP 1 Score: 280 bits (716), Expect = 1.010e-95
Identity = 133/133 (100.00%), Postives = 133/133 (100.00%), Query Frame = 1 
Query:    1 DGAAPAQQLLFRGTKIVGDPHVPAGRCSFLVDLARDYDVDAEIAAASTGLVVVFGPNGAQVLDLGLRAPAVARWCKGRGQVNMRSDRWAPTWVDVDCLLYRTGAGAGGAAEYAYSIIWREPTHGIRILVDFRR 399
            DGAAPAQQLLFRGTKIVGDPHVPAGRCSFLVDLARDYDVDAEIAAASTGLVVVFGPNGAQVLDLGLRAPAVARWCKGRGQVNMRSDRWAPTWVDVDCLLYRTGAGAGGAAEYAYSIIWREPTHGIRILVDFRR
Sbjct:    1 DGAAPAQQLLFRGTKIVGDPHVPAGRCSFLVDLARDYDVDAEIAAASTGLVVVFGPNGAQVLDLGLRAPAVARWCKGRGQVNMRSDRWAPTWVDVDCLLYRTGAGAGGAAEYAYSIIWREPTHGIRILVDFRR 133
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BLAST of jgi.p|Trimin1|154361 vs. uniprot
Match: A0A835ZDM1_9STRA (Uncharacterized protein (Fragment) n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A835ZDM1_9STRA)

HSP 1 Score: 122 bits (307), Expect = 6.520e-31
Identity = 70/134 (52.24%), Postives = 84/134 (62.69%), Query Frame = 1 
Query:   25 LLFRGTKIVGDPHVPAGRC-------SFLVDLARDYDVDAEIAAASTGLVVVFGPNGAQVLDLGLRAPAVARWCKGRGQVNMRSDRWAPTW--VDVDCLLYRTGAGAGGAAEYAYSIIWREPTHGIRILVDFRR 399
            LL RG K+VG  +  +G         SF VDLAR YDV AE+AA S GLVV F   GA V+DL  RAP++ARWCKG+G VN  +   A     VDVDCL+Y      G  A + +SIIWREP HG+RI+VDF R
Sbjct:  254 LLMRGAKVVGSSNTNSGSTGSADRHWSFAVDLARGYDVAAEMAATS-GLVVAFVAGGAHVIDLHARAPSIARWCKGQGHVNGGAAAGAARGAVVDVDCLVY------GPRAAHGFSIIWREPKHGVRIIVDFAR 380
The following BLAST results are available for this feature:
BLAST of jgi.p|Trimin1|154361 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 2
Match NameE-valueIdentityDescription
A0A835ZDD8_9STRA1.010e-95100.00Uncharacterized protein (Fragment) n=1 Tax=Tribone... [more]
A0A835ZDM1_9STRA6.520e-3152.24Uncharacterized protein (Fragment) n=1 Tax=Tribone... [more]
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
Contig_133contigContig_133:264849..265247 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Tribonema minus UTEX_B_31562021-06-17
Properties
Property NameValue
ProteomeIdTrimin1|154361|gw1.133.84.1
DescriptionDomain of unknown function (DUF3506)
COG categoryS
Max annot lvl3041|Chlorophyta
EggNOG OGs2CMKY@1|root,2QQS3@2759|Eukaryota,37M8P@33090|Viridiplantae,34KZZ@3041|Chlorophyta
Evalue0.000423
Seed ortholog3067.XP_002954035.1
Hectar predicted targeting categoryother localisation
TranscriptId154683
TrackFilteredModels1
ProteinId154361
Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesTypePosition
jgi.p|Trimin1|154361gene_14045Tribonema minus UTEX_B_3156 geneContig_133 264849..265247 +


The following exon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
exon_14045_1exon_14045_1Tribonema minus UTEX_B_3156 exonContig_133 264849..265247 +


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
CDS_14045CDS_14045Tribonema minus UTEX_B_3156 CDSContig_133 264849..265247 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
jgi.p|Trimin1|154361Trimin1|154361|gw1.133.84.1Tribonema minus UTEX_B_3156 polypeptideContig_133 264849..265247 +


Sequences
The following sequences are available for this feature:

spliced messenger RNA

>mRNA_14045 ID=mRNA_14045|Name=jgi.p|Trimin1|154361|organism=Tribonema minus UTEX_B_3156 |type=mRNA|length=399bp|location=Sequence derived from alignment at Contig_133:264849..265247+ (Tribonema minus UTEX_B_3156 )|Notes=Excludes all bases but those of type(s): exon.  
GACGGCGCGGCGCCCGCTCAGCAGCTCCTCTTCCGAGGCACCAAGATCGT
CGGCGACCCGCACGTCCCCGCGGGGCGCTGCTCCTTCCTGGTCGACCTCG
CGCGCGACTACGACGTCGACGCCGAGATCGCCGCCGCGTCAACCGGCCTC
GTCGTCGTCTTTGGGCCGAACGGCGCACAGGTCCTCGACCTCGGCCTGCG
CGCGCCCGCCGTCGCGCGCTGGTGCAAGGGCCGCGGCCAGGTCAACATGC
GCAGCGACCGCTGGGCGCCGACGTGGGTCGACGTCGACTGCCTGCTGTAC
CGCACCGGCGCGGGTGCGGGCGGCGCGGCGGAGTACGCGTATAGCATCAT
CTGGCGTGAGCCGACGCACGGCATCCGCATCCTCGTCGACTTCCGGCGC
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protein sequence of jgi.p|Trimin1|154361

>Trimin1|154361|gw1.133.84.1 ID=Trimin1|154361|gw1.133.84.1|Name=jgi.p|Trimin1|154361|organism=Tribonema minus UTEX_B_3156 |type=polypeptide|length=133bp
DGAAPAQQLLFRGTKIVGDPHVPAGRCSFLVDLARDYDVDAEIAAASTGL
VVVFGPNGAQVLDLGLRAPAVARWCKGRGQVNMRSDRWAPTWVDVDCLLY
RTGAGAGGAAEYAYSIIWREPTHGIRILVDFRR
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mRNA from alignment at Contig_133:264849..265247+

Legend: exonpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_14045 ID=mRNA_14045|Name=jgi.p|Trimin1|154361|organism=Tribonema minus UTEX_B_3156 |type=mRNA|length=399bp|location=Sequence derived from alignment at Contig_133:264849..265247+ (Tribonema minus UTEX_B_3156 )
GACGGCGCGGCGCCCGCTCAGCAGCTCCTCTTCCGAGGCACCAAGATCGT
CGGCGACCCGCACGTCCCCGCGGGGCGCTGCTCCTTCCTGGTCGACCTCG
CGCGCGACTACGACGTCGACGCCGAGATCGCCGCCGCGTCAACCGGCCTC
GTCGTCGTCTTTGGGCCGAACGGCGCACAGGTCCTCGACCTCGGCCTGCG
CGCGCCCGCCGTCGCGCGCTGGTGCAAGGGCCGCGGCCAGGTCAACATGC
GCAGCGACCGCTGGGCGCCGACGTGGGTCGACGTCGACTGCCTGCTGTAC
CGCACCGGCGCGGGTGCGGGCGGCGCGGCGGAGTACGCGTATAGCATCAT
CTGGCGTGAGCCGACGCACGGCATCCGCATCCTCGTCGACTTCCGGCGC
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Coding sequence (CDS) from alignment at Contig_133:264849..265247+

>mRNA_14045 ID=mRNA_14045|Name=jgi.p|Trimin1|154361|organism=Tribonema minus UTEX_B_3156 |type=CDS|length=399bp|location=Sequence derived from alignment at Contig_133:264849..265247+ (Tribonema minus UTEX_B_3156 )
GACGGCGCGGCGCCCGCTCAGCAGCTCCTCTTCCGAGGCACCAAGATCGT
CGGCGACCCGCACGTCCCCGCGGGGCGCTGCTCCTTCCTGGTCGACCTCG
CGCGCGACTACGACGTCGACGCCGAGATCGCCGCCGCGTCAACCGGCCTC
GTCGTCGTCTTTGGGCCGAACGGCGCACAGGTCCTCGACCTCGGCCTGCG
CGCGCCCGCCGTCGCGCGCTGGTGCAAGGGCCGCGGCCAGGTCAACATGC
GCAGCGACCGCTGGGCGCCGACGTGGGTCGACGTCGACTGCCTGCTGTAC
CGCACCGGCGCGGGTGCGGGCGGCGCGGCGGAGTACGCGTATAGCATCAT
CTGGCGTGAGCCGACGCACGGCATCCGCATCCTCGTCGACTTCCGGCGC
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