mRNA_1404 (mRNA) Tribonema minus UTEX_B_3156

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
Namejgi.p|Trimin1|161849
Unique NamemRNA_1404
TypemRNA
OrganismTribonema minus UTEX_B_3156 (Tribonema minus UTEX_B_3156 )
Homology
BLAST of jgi.p|Trimin1|161849 vs. uniprot
Match: A0A835YYA9_9STRA (Putative nuclease n=2 Tax=Tribonema minus TaxID=303371 RepID=A0A835YYA9_9STRA)

HSP 1 Score: 284 bits (727), Expect = 6.390e-97
Identity = 137/143 (95.80%), Postives = 140/143 (97.90%), Query Frame = 1
Query:    1 MSRAGSTNWDNVTYDTCDKYLPAHDGDIAKVVRVIDGDTVHLALKSNGTFTRIVCRLHGIDAAELHSKDEHEKALGEKAKSILAAACDNKLVTLSNVGLEKYGRLLADLTVEGMDVTLSQVMLKVPDVCHTYDGGKKSPWLNK 429
            +SRAGST WDNVTYDTCDKYLPAHDGD+AKVVRVIDGDTVHLALKSNGTFTRIVCRLHGIDAAELHSKDEHEKALGEKAKSILAAACDNKLVTLSNVGLEKYGRLLADLTVEG +VTLSQVMLKVPDVCH YDGGKKSPWLNK
Sbjct:   10 ISRAGSTTWDNVTYDTCDKYLPAHDGDVAKVVRVIDGDTVHLALKSNGTFTRIVCRLHGIDAAELHSKDEHEKALGEKAKSILAAACDNKLVTLSNVGLEKYGRLLADLTVEGTNVTLSQVMLKVPDVCHAYDGGKKSPWLNK 152          
BLAST of jgi.p|Trimin1|161849 vs. uniprot
Match: A0A836CPX4_9STRA (Putative nuclease n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A836CPX4_9STRA)

HSP 1 Score: 213 bits (542), Expect = 9.760e-69
Identity = 100/131 (76.34%), Postives = 114/131 (87.02%), Query Frame = 1
Query:   22 NWDNVTYDTCDKYLPAHDGDIAKVVRVIDGDTVHLALKSNGTFTRIVCRLHGIDAAELHSKDEHEKALGEKAKSILAAACDNKLVTLSNVGLEKYGRLLADLTVEGMDVTLSQVMLKVPDVCHTYDGGKKS 414
            +W +VTYD+C+KYLPAHDGDIAKV+RVIDGDTVHLALK+NG F R+ CRL GID AE+ SKD  EK L E+AKS+LA ACDNKLVTLSNV LEKYGRLLADLTV G DVTLSQVML +P++CH YDGGKK+
Sbjct:   18 DWQDVTYDSCEKYLPAHDGDIAKVIRVIDGDTVHLALKNNGNFVRLSCRLQGIDTAEMRSKDSDEKDLAERAKSVLAGACDNKLVTLSNVSLEKYGRLLADLTVVGSDVTLSQVMLNLPELCHAYDGGKKT 148          
BLAST of jgi.p|Trimin1|161849 vs. uniprot
Match: A0A835Z7E9_9STRA (FirrV-1-P2 n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A835Z7E9_9STRA)

HSP 1 Score: 125 bits (313), Expect = 3.650e-34
Identity = 62/134 (46.27%), Postives = 83/134 (61.94%), Query Frame = 1
Query:   19 TNWDNVTYDTCDKYLPAHDGDIAKVVRVIDGDTVHLALKSNGTFTRIVCRLHGIDAAELHSKDEHEKALGEKAKSILAAACDNKLVTLSNVGLEKYGRLLADLTVEGMDVTLSQVMLKVPDVCHTYDGGKKSPW 420
            T  + +TY++C ++L   +GD  K+V+V DGDTV  A   NG   +  CRL GID  ELHS + HEKAL  KA+  L+A   NK+VT+ +  LEKYGR+L DL V+G        M+ + DVC+ YDGG K  W
Sbjct:    2 TELNKLTYESCKQFLALEEGDKVKIVKVYDGDTVTAAFIRNGIPVKFQCRLEGIDTPELHSSEPHEKALAVKARDALSALTLNKVVTVKSPSLEKYGRILCDLEVDGKSAC--DEMMALHDVCYAYDGGSKKQW 133          
BLAST of jgi.p|Trimin1|161849 vs. uniprot
Match: B5LWN7_9PHYC (Putative nuclease n=1 Tax=Feldmannia species virus TaxID=39420 RepID=B5LWN7_9PHYC)

HSP 1 Score: 107 bits (266), Expect = 7.060e-27
Identity = 56/127 (44.09%), Postives = 77/127 (60.63%), Query Frame = 1
Query:   49 CDKYLPAHDGDIAKVVRVIDGDTVHLALKSN-GTFTRIVCRLHGIDAAELHSKDEHEKALGEKAKSILAAACDNKLVTLSNVGLEKYGRLLADLTVEGMDVTLSQVMLKVPDVCHTYDGGKKSPWLN 426
            C +YLP H+GDI  V RV DGDT  LA   + G   R  CR+  ID  E+  K   E+ +   AK  L +A   K VT+     +KYGR+LADL+ E +  ++S  ML++PD+C +Y GGKK+PWL+
Sbjct:   16 CVRYLPVHEGDIVFVCRVYDGDTCTLAWVDHAGRSVRSSCRIRDIDTPEMRGKSPEERKMASLAKERLQSAILEKFVTVWRPSSDKYGRILADLSTESIR-SVSTYMLEMPDICKSYTGGKKTPWLS 141          
BLAST of jgi.p|Trimin1|161849 vs. uniprot
Match: A0A6C0FAJ1_9ZZZZ (TNase-like domain-containing protein n=1 Tax=viral metagenome TaxID=1070528 RepID=A0A6C0FAJ1_9ZZZZ)

HSP 1 Score: 93.2 bits (230), Expect = 3.370e-21
Identity = 56/141 (39.72%), Postives = 86/141 (60.99%), Query Frame = 1
Query:   22 NWDNVTYDTCDKYLPAHDGDIAKVVRVIDGDTVHLALKSNGTFT---RIVCRLHGIDAAELHSKDEHEKALGEKAKSILAAACDNKLVTLSNVGLEKYGRLLADLTVEGMDVTLSQVMLKVPDVCHTYDGGKK-SP--WLN 426
            +W +V+Y T + + P      AKVV+V DGDT+ +A     T +   R   RL GID  E+ +KD  EK  G+KA+ I+     NK+V +SN+  +KYGR+LAD++++G++VT + +   +  V   Y+GGKK SP  WL+
Sbjct:   14 DWSDVSYKTTEVFRPVFSK--AKVVKVYDGDTITVATPLQFTGSPVYRFSVRLRGIDCPEIRTKDADEKVCGQKARKIMLDQVMNKVVDVSNIDYDKYGRILADVSIDGVNVTEALITQNLAVV---YNGGKKNSPENWLD 149          
BLAST of jgi.p|Trimin1|161849 vs. uniprot
Match: A0A6C0LVU8_9ZZZZ (TNase-like domain-containing protein n=1 Tax=viral metagenome TaxID=1070528 RepID=A0A6C0LVU8_9ZZZZ)

HSP 1 Score: 79.3 bits (194), Expect = 7.410e-16
Identity = 47/129 (36.43%), Postives = 73/129 (56.59%), Query Frame = 1
Query:   34 VTYDTCDKYLPAHDGDIAKVVRVIDGDTVHLALK---SNGTFTRIVCRLHGIDAAELHSKDEHEKALGEKAKSILAAACDNKLVTLSNVGLEKYGRLLADLTVEGMDVTLSQVMLKVPDVCHTYDGGKK 411
            + Y     ++P   G   KV++V DGDT+ +A K    N  + R   R++GID  E+  K E+EK     A+  +    + K+V L NV LEKYGR+LAD+ +EG+++  S +  ++     +YDGGKK
Sbjct:   30 IKYKETIPFIPPVTG--GKVIKVYDGDTITIASKMPWDNSPYYRFSVRINGIDCPEIKGKTENEKQCAILAREHVDHLVNGKIVHLENVSLEKYGRILADVFIEGVNIGQSLLEKRL---AVSYDGGKK 153          
BLAST of jgi.p|Trimin1|161849 vs. uniprot
Match: A0A6C0HI73_9ZZZZ (TNase-like domain-containing protein n=1 Tax=viral metagenome TaxID=1070528 RepID=A0A6C0HI73_9ZZZZ)

HSP 1 Score: 76.6 bits (187), Expect = 7.600e-15
Identity = 48/141 (34.04%), Postives = 76/141 (53.90%), Query Frame = 1
Query:   16 STNWDNVTYDTCDKYLPAHDGDIAKVVRVIDGDTVHLALK---SNGTFTRIVCRLHGIDAAELHSKDEHEKALGEKAKSILAAACDNKLVTLSNVGLEKYGRLLADLTVEGMDVTLSQVMLKVPDVCHTYDGGKKSP--WL 423
            S ++ N++YD    ++P       KV++V DGDT+ +A +   S     RI  RL+GID  E+  + + EK L +K +  L     NK+V L N   EKYGRLLAD+ ++G  V +++ M++       + G K  P  W+
Sbjct:   27 SDDFTNISYDNTVPFVPPVT--YGKVIKVYDGDTITIAARLPYSKSAIYRIAVRLNGIDTPEIKGQTQKEKDLAKKIRDTLQTKLMNKIVQLKNTSSEKYGRLLADVYLDG--VCINEWMVEQGYAVRYHGGTKIRPTEWI 163          
BLAST of jgi.p|Trimin1|161849 vs. uniprot
Match: A0A6C0AUH4_9ZZZZ (TNase-like domain-containing protein n=1 Tax=viral metagenome TaxID=1070528 RepID=A0A6C0AUH4_9ZZZZ)

HSP 1 Score: 73.9 bits (180), Expect = 4.830e-14
Identity = 47/139 (33.81%), Postives = 69/139 (49.64%), Query Frame = 1
Query:   16 STNWDNV----TYDTCDKYLPAHDGDIAKVVRVIDGDTVHLALKSNGTFTRIVCRLHGIDAAELHSKDEHEKALGEKAKSILAAACDNKLVTLSNVGLEKYGRLLADLTVEGMDVTLSQVMLKVPDVCHTYDGGKKSPW 420
            S  WD++     Y  C K          KVV V DGDTV      NG   +  CRL G+D  E+ + ++ EKA G   + +L     NK+V +    L+KYGRLL  + ++G++V  +Q ++   +    YDGG K  W
Sbjct:    2 SIEWDSIHDAPDYSDCVKGTTVE----GKVVSVYDGDTVKTIFPLNGVLYKWNCRLTGVDTPEIRTSNKKEKAFGYVVRDLLREKILNKVVQVKCDDLDKYGRLLTVIYIDGVNV--NQWLID-NEYAFAYDGGTKRSW 133          
BLAST of jgi.p|Trimin1|161849 vs. uniprot
Match: A0A6C0IJ23_9ZZZZ (TNase-like domain-containing protein n=1 Tax=viral metagenome TaxID=1070528 RepID=A0A6C0IJ23_9ZZZZ)

HSP 1 Score: 73.6 bits (179), Expect = 1.070e-13
Identity = 49/131 (37.40%), Postives = 70/131 (53.44%), Query Frame = 1
Query:   28 DNVTYDTCDKYLPAHDGDIAKVVRVIDGDTVHLALK---SNGTFTRIVCRLHGIDAAELHSKDEHEKALGEKAKSILAAACDNKLVTLSNVGLEKYGRLLADLTVEGMDVTLSQVMLKVPDVCHTYDGGKK 411
            D + YD C +++P  +   AKVV+V DGDT+ +A K         R   RL GIDA EL+S + +E+     +++ L     N+ V+L NV +EKYGRLLAD+    + V      L   +    Y GGKK
Sbjct:   29 DTIKYDDCARFIP--EIRYAKVVKVYDGDTITVACKYPIRGKQLYRFSVRLAGIDAPELNSNNSNERIHANVSRTNLQGLIFNETVSLENVRIEKYGRLLADVYFHDLHVN---AWLLDNEYAIPYYGGKK 154          
BLAST of jgi.p|Trimin1|161849 vs. uniprot
Match: A0A6C0CPC4_9ZZZZ (TNase-like domain-containing protein n=1 Tax=viral metagenome TaxID=1070528 RepID=A0A6C0CPC4_9ZZZZ)

HSP 1 Score: 71.6 bits (174), Expect = 4.840e-13
Identity = 47/130 (36.15%), Postives = 77/130 (59.23%), Query Frame = 1
Query:   34 VTYDTCDKYLPAHDGDIAK--VVRVIDGDTVHLA--LKSNGTFTRIVCRLHGIDAAELHSKDEHEKALGEKAKSILAAACDNKLVTLSNVGLEKYGRLLADLTVEGMDVTLSQVMLKVPDVCHTYDGGKK 411
            + +D   KY P +  +I +  V++V DGDT+ +   +K++ T  +   RL+ ID  E+ +KD  EK +  KA+  +A     K+VTL NVGL+KYGRLLA + + G     S+++ +  ++  +YDGG K
Sbjct:   12 IPFDENTKY-PTYVPEITRGRVIKVYDGDTITILGRVKNSSTLYKFSVRLNRIDCPEMRTKDLKEKFVATKARDFVAELTLQKIVTLKNVGLDKYGRLLAHVYI-GKRCINSELIER--NLAVSYDGGTK 137          
The following BLAST results are available for this feature:
BLAST of jgi.p|Trimin1|161849 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
A0A835YYA9_9STRA6.390e-9795.80Putative nuclease n=2 Tax=Tribonema minus TaxID=30... [more]
A0A836CPX4_9STRA9.760e-6976.34Putative nuclease n=1 Tax=Tribonema minus TaxID=30... [more]
A0A835Z7E9_9STRA3.650e-3446.27FirrV-1-P2 n=1 Tax=Tribonema minus TaxID=303371 Re... [more]
B5LWN7_9PHYC7.060e-2744.09Putative nuclease n=1 Tax=Feldmannia species virus... [more]
A0A6C0FAJ1_9ZZZZ3.370e-2139.72TNase-like domain-containing protein n=1 Tax=viral... [more]
A0A6C0LVU8_9ZZZZ7.410e-1636.43TNase-like domain-containing protein n=1 Tax=viral... [more]
A0A6C0HI73_9ZZZZ7.600e-1534.04TNase-like domain-containing protein n=1 Tax=viral... [more]
A0A6C0AUH4_9ZZZZ4.830e-1433.81TNase-like domain-containing protein n=1 Tax=viral... [more]
A0A6C0IJ23_9ZZZZ1.070e-1337.40TNase-like domain-containing protein n=1 Tax=viral... [more]
A0A6C0CPC4_9ZZZZ4.840e-1336.15TNase-like domain-containing protein n=1 Tax=viral... [more]

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
Contig_18contigContig_18:955176..955607 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Tribonema minus UTEX_B_31562021-06-17
Properties
Property NameValue
ProteomeIdTrimin1|161849|e_gw1.18.299.1
DescriptionCOG1525 Micrococcal nuclease (thermonuclease) homologs
COG categoryL
Max annot lvl28211|Alphaproteobacteria
EggNOG OGsCOG1525@1|root,COG1525@2|Bacteria,1R658@1224|Proteobacteria,2U0EH@28211|Alphaproteobacteria
Evalue1.17e-14
Seed ortholog1187851.A33M_0275
Hectar predicted targeting categoryother localisation
TranscriptId162171
TrackFilteredModels1
ProteinId161849
Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesTypePosition
jgi.p|Trimin1|161849gene_1404Tribonema minus UTEX_B_3156 geneContig_18 955176..955607 +


The following exon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
exon_1404_1exon_1404_1Tribonema minus UTEX_B_3156 exonContig_18 955176..955607 +


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
CDS_1404CDS_1404Tribonema minus UTEX_B_3156 CDSContig_18 955176..955607 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
jgi.p|Trimin1|161849Trimin1|161849|e_gw1.18.299.1Tribonema minus UTEX_B_3156 polypeptideContig_18 955176..955607 +


Sequences
The following sequences are available for this feature:

spliced messenger RNA

>mRNA_1404 ID=mRNA_1404|Name=jgi.p|Trimin1|161849|organism=Tribonema minus UTEX_B_3156 |type=mRNA|length=432bp|location=Sequence derived from alignment at Contig_18:955176..955607+ (Tribonema minus UTEX_B_3156 )|Notes=Excludes all bases but those of type(s): exon.  
ATGTCCCGAGCCGGCAGCACCAATTGGGACAATGTAACGTATGATACGTG
TGACAAGTACTTGCCTGCACACGACGGCGACATCGCCAAGGTCGTCCGTG
TGATAGATGGTGACACAGTGCACCTGGCCTTGAAAAGTAATGGCACGTTT
ACAAGGATTGTTTGCAGGCTGCACGGTATTGATGCTGCGGAGCTGCACTC
TAAAGATGAGCATGAGAAGGCACTAGGGGAGAAAGCAAAGTCAATTTTGG
CGGCAGCCTGTGACAACAAGCTAGTAACTCTGTCGAATGTAGGGTTGGAG
AAGTATGGCAGGCTGCTTGCGGACCTTACCGTTGAGGGGATGGATGTGAC
GCTATCGCAGGTAATGCTTAAAGTCCCGGATGTATGTCACACGTACGACG
GGGGCAAGAAGAGCCCCTGGCTGAACAAGTAG
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protein sequence of jgi.p|Trimin1|161849

>Trimin1|161849|e_gw1.18.299.1 ID=Trimin1|161849|e_gw1.18.299.1|Name=jgi.p|Trimin1|161849|organism=Tribonema minus UTEX_B_3156 |type=polypeptide|length=144bp
MSRAGSTNWDNVTYDTCDKYLPAHDGDIAKVVRVIDGDTVHLALKSNGTF
TRIVCRLHGIDAAELHSKDEHEKALGEKAKSILAAACDNKLVTLSNVGLE
KYGRLLADLTVEGMDVTLSQVMLKVPDVCHTYDGGKKSPWLNK*
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mRNA from alignment at Contig_18:955176..955607+

Legend: exonpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_1404 ID=mRNA_1404|Name=jgi.p|Trimin1|161849|organism=Tribonema minus UTEX_B_3156 |type=mRNA|length=432bp|location=Sequence derived from alignment at Contig_18:955176..955607+ (Tribonema minus UTEX_B_3156 )
ATGTCCCGAGCCGGCAGCACCAATTGGGACAATGTAACGTATGATACGTG TGACAAGTACTTGCCTGCACACGACGGCGACATCGCCAAGGTCGTCCGTG TGATAGATGGTGACACAGTGCACCTGGCCTTGAAAAGTAATGGCACGTTT ACAAGGATTGTTTGCAGGCTGCACGGTATTGATGCTGCGGAGCTGCACTC TAAAGATGAGCATGAGAAGGCACTAGGGGAGAAAGCAAAGTCAATTTTGG CGGCAGCCTGTGACAACAAGCTAGTAACTCTGTCGAATGTAGGGTTGGAG AAGTATGGCAGGCTGCTTGCGGACCTTACCGTTGAGGGGATGGATGTGAC GCTATCGCAGGTAATGCTTAAAGTCCCGGATGTATGTCACACGTACGACG GGGGCAAGAAGAGCCCCTGGCTGAACAAGTAG
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Coding sequence (CDS) from alignment at Contig_18:955176..955607+

>mRNA_1404 ID=mRNA_1404|Name=jgi.p|Trimin1|161849|organism=Tribonema minus UTEX_B_3156 |type=CDS|length=432bp|location=Sequence derived from alignment at Contig_18:955176..955607+ (Tribonema minus UTEX_B_3156 )
ATGTCCCGAGCCGGCAGCACCAATTGGGACAATGTAACGTATGATACGTG
TGACAAGTACTTGCCTGCACACGACGGCGACATCGCCAAGGTCGTCCGTG
TGATAGATGGTGACACAGTGCACCTGGCCTTGAAAAGTAATGGCACGTTT
ACAAGGATTGTTTGCAGGCTGCACGGTATTGATGCTGCGGAGCTGCACTC
TAAAGATGAGCATGAGAAGGCACTAGGGGAGAAAGCAAAGTCAATTTTGG
CGGCAGCCTGTGACAACAAGCTAGTAACTCTGTCGAATGTAGGGTTGGAG
AAGTATGGCAGGCTGCTTGCGGACCTTACCGTTGAGGGGATGGATGTGAC
GCTATCGCAGGTAATGCTTAAAGTCCCGGATGTATGTCACACGTACGACG
GGGGCAAGAAGAGCCCCTGGCTGAACAAGTAG
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