mRNA_14006 (mRNA) Tribonema minus UTEX_B_3156

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
Namejgi.p|Trimin1|176502
Unique NamemRNA_14006
TypemRNA
OrganismTribonema minus UTEX_B_3156 (Tribonema minus UTEX_B_3156 )
Homology
BLAST of jgi.p|Trimin1|176502 vs. uniprot
Match: A0A835ZEH1_9STRA (Inosine/uridine-preferring nucleoside hydrolase domain-containing protein (Fragment) n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A835ZEH1_9STRA)

HSP 1 Score: 628 bits (1619), Expect = 2.160e-227
Identity = 313/313 (100.00%), Postives = 313/313 (100.00%), Query Frame = 1
Query:    1 DDALCLLACINSPAVELVGVSVTFGNANLTEMVDIARDLLDNFHPAGDLEVHVGAAGPGHHNVTTDAVAAMLNTATLDNGSSALTIVCAGPATNVASLLTLHPGVSTSIQEVVVVAGRRPGQRFTTGAATEHGHPDLNFENDPAAFAVLLASRMPLTYAPFEVSSQVRVTETDLAAALGSGGAVGAYVARVGAPWLRLWRDLFDVRYFHPFDSLAALRVTHPELLACDELESWVALGPDDAAHPGVQGRSGKELGGDETLKPYLLVGDGAPPGHDGPSRRVLYCHTPLEGAVQAIWESILPPVRGGGGAAAEL 939
            DDALCLLACINSPAVELVGVSVTFGNANLTEMVDIARDLLDNFHPAGDLEVHVGAAGPGHHNVTTDAVAAMLNTATLDNGSSALTIVCAGPATNVASLLTLHPGVSTSIQEVVVVAGRRPGQRFTTGAATEHGHPDLNFENDPAAFAVLLASRMPLTYAPFEVSSQVRVTETDLAAALGSGGAVGAYVARVGAPWLRLWRDLFDVRYFHPFDSLAALRVTHPELLACDELESWVALGPDDAAHPGVQGRSGKELGGDETLKPYLLVGDGAPPGHDGPSRRVLYCHTPLEGAVQAIWESILPPVRGGGGAAAEL
Sbjct:    1 DDALCLLACINSPAVELVGVSVTFGNANLTEMVDIARDLLDNFHPAGDLEVHVGAAGPGHHNVTTDAVAAMLNTATLDNGSSALTIVCAGPATNVASLLTLHPGVSTSIQEVVVVAGRRPGQRFTTGAATEHGHPDLNFENDPAAFAVLLASRMPLTYAPFEVSSQVRVTETDLAAALGSGGAVGAYVARVGAPWLRLWRDLFDVRYFHPFDSLAALRVTHPELLACDELESWVALGPDDAAHPGVQGRSGKELGGDETLKPYLLVGDGAPPGHDGPSRRVLYCHTPLEGAVQAIWESILPPVRGGGGAAAEL 313          
BLAST of jgi.p|Trimin1|176502 vs. uniprot
Match: A0A6A7L655_9BACT (Nucleoside hydrolase n=1 Tax=Luteitalea sp. TaxID=2004800 RepID=A0A6A7L655_9BACT)

HSP 1 Score: 205 bits (522), Expect = 2.430e-60
Identity = 121/287 (42.16%), Postives = 162/287 (56.45%), Query Frame = 1
Query:    1 DDALCLLACINSPAVELVGVSVTFGNANLTEMVDIARDLLDNFHPAGDLEVHVGAAGP---GHHNVTTDAVAAMLNTATLDNGSSALTIVCAGPATNVASLLTLHPGVSTSIQEVVVVAGRRPGQRFTTGAATEHGHPDLNFENDPAAFAVLLASRMPLTYAPFEVSSQVRVTETDLAAALGSGGAVGAYVARVGAPWLRLWRDLFDVRYFHPFDSLAALRVTHPELLACDELESWVALGPDDAAHPGVQGRSGKELGGDETLKPYLLVGDGAPPGHDGPSRRVLYC 852
            DD L L+   +SP + + GVSV FGNA L +   I + +++ F P G L+V+ G  GP   G     ++A+AA L           LTI+  GP TN+A++L   P ++  I+ VV VAGRRPGQRFTTG +   GH D NFE DP AF VLL   +PL  APFE+SS+V +T+TD+   L  G     ++A     W + WRD+FDV  F+PFD+LA   +THP+LL C+ L   +  GPDD   P VQG + +E       KPYL+V            RR  YC
Sbjct:   63 DDGLALIQAFHSPELVIRGVSVVFGNAPLADAFPIGQRVVERFGPRG-LQVYRGGRGPEDLGRTTPASEALAAALR-------REPLTILAIGPLTNMATILMDEPALAERIRAVVAVAGRRPGQRFTTGTSNPRGHRDFNFEQDPDAFRVLLDRDIPLVLAPFELSSKVWLTDTDVQR-LAEGSQAARWLAAPARAWSQTWRDVFDVDGFNPFDTLAVGYLTHPDLLTCETLPIAIETGPDDVTEPRVQGTTARE-------KPYLIVSASL----SAAGRRATYC 329          
BLAST of jgi.p|Trimin1|176502 vs. uniprot
Match: A0A5S9IQ58_9BACT (Ribosylpyrimidine nucleosidase n=1 Tax=Candidatus Uabimicrobium amorphum TaxID=2596890 RepID=A0A5S9IQ58_9BACT)

HSP 1 Score: 167 bits (422), Expect = 9.200e-46
Identity = 102/266 (38.35%), Postives = 144/266 (54.14%), Query Frame = 1
Query:    1 DDALCLLACINSPAVELVGVSVTFGNANLTEMVDIARDLLDNFHPAGDLEVHVGAAGPGHHNVTTDAVAAMLNTATLDNGSSALTIVCAGPATNVASLLTLHPGVSTSIQEVVVVAGRRPGQRFTTGAATEHGHPDLNFENDPAAFAVLLASRMPLTYAPFEVSSQVRVTETDLAAALGSGGAVGAYVARVGAPWLRLWRDLFDVRYFHPFDSLAALRVTHPELLACDELESWVALGPDDAAHPGVQGRSGKELGGDETLKPYLLV 798
            DDAL LL    SP + +VG+SV FGNA+L E   IA+ L+  F    D ++ V         V ++  A+    A L      LTI+  GP TN+A+++  HP ++  ++E++ VAGRRP QRF TG      H D NFE DP AF  LL + +PL  APFE+SS+V + ++DL     S  A   ++      WL LW  +F V  F+PFD+LA   +T P+++  ++L   +   PDD     +QG   KE       KPYLLV
Sbjct:   39 DDALALLQAFRSPELNIVGISVVFGNASLKEGYPIAKLLVAKF---SDKKIPVYKGAKEGDEVGSETAASENLYAALQKRP--LTILALGPVTNIATVVKNHPKIAGQVKEIIAVAGRRPQQRFQTGTKNTKAHRDFNFEKDPQAFRELLKTEIPLVLAPFEISSKVWMKKSDLDYLEKSKDAACTWLVPHARNWLNLWEVVFYVDGFNPFDTLAVAYLTSPKMITSEKLPVAIQTLPDDVTEERMQGTKEKE-------KPYLLV 292          
BLAST of jgi.p|Trimin1|176502 vs. uniprot
Match: A0A359LR79_9BACT (IU_nuc_hydro domain-containing protein n=1 Tax=Bryobacterales bacterium TaxID=2026791 RepID=A0A359LR79_9BACT)

HSP 1 Score: 157 bits (396), Expect = 5.790e-42
Identity = 113/285 (39.65%), Postives = 142/285 (49.82%), Query Frame = 1
Query:    1 DDALCLLACINSPAVELVGVSVTFGNANLTEMVDIARDLLDNFHPAGDLEVHVGAAGPGHHNVTTDAVAAMLNTATLDNGSSALTIVCAGPATNVASLLTLHPGVSTSIQEVVVVAGRRPGQRFTTGAATEHGHPDLNFENDPAAFAVLLASRMPLTYAPFEVSSQVRVTETDL-AAALGSGGAVGAYVARVGAPWLRLWRDLFDVRYFHPFDSLAALRVTHPELLACDELESWVALGPDDAAHPGVQGRSGKELGGDETLKPYLLVGDGAPPGHDGPSRRVLYC 852
            DD L LL    SP +E+ GVS+ FGNA L     I R+++  F P G + VH GAAG       T A  A+   A L  G   LT++  GP TNVA+++  HP +   I+ VV VAGRRPGQ F  G   +    DLNFE DP AF VLLA+R+PL  AP+E+SS V +T  +L  AA  + G      A V   W+ LW   F    F+PFD+LA   +  P  L C  + + V    DD               G    KPYLLVG        G    V YC
Sbjct:   47 DDGLALLQAFASPELEIRGVSIVFGNAELATASRIGREIVGRFGPKG-MAVHDGAAGESDLGKETAASRALA--AELRRGP--LTVLVLGPGTNVATVVRQHPELVGRIERVVAVAGRRPGQSFRAGPRQKTPFRDLNFELDPEAFRVLLAARVPLVLAPWEISSGVWLTRGELETAAKRNVGMEWMLPALVD--WIELWEREFGAEGFNPFDALAVGYLVKPGSLECSRMRARVEKAADDT--------------GASDRKPYLLVGAAR-----GGGEEVTYC 305          
BLAST of jgi.p|Trimin1|176502 vs. uniprot
Match: A0A523DYN8_9BACT (IU_nuc_hydro domain-containing protein n=2 Tax=Bacteria TaxID=2 RepID=A0A523DYN8_9BACT)

HSP 1 Score: 147 bits (371), Expect = 2.570e-38
Identity = 106/309 (34.30%), Postives = 151/309 (48.87%), Query Frame = 1
Query:    1 DDALCLLACINSPAVELVGVSVTFGNANLTEMVDIARDLLDNFHPAGDLEVHVGAAGPGHHNVTTDAVAAMLNTATLDNGSSALTIVCAGPATNVASLLTLHPGVSTSIQEVVVVAGRRPGQRFTTGAATEHGHP--DLNFENDPAAFAVLLASRMPLTYAPFEVSSQVRVTETDLAAALGSGGAVGAYVARVGAPWLRLWRDL-------FDVRYFHPFDSLAALRVTHPELLACDELESWVALGPDDAAHPGVQGRSGKELGGDETLKPYLLVGDGAPPGHDGPSRRVLYCHTPLEGAVQAIWESIL 900
            DD L LL   +SP +E+ GVSV FGN+ L +    A++++  F P G LEV+ GAA      +  DA  A+      +     LT++  GP TNVA++L  HP +++ I+E++ VAGRRPGQ F  G   E   P  D+NFE D   F +LL S  P+  APFE+S++  +++ D+           A V  +   +L   RD        F VR  +PFD+LA   +T P+ + CD L   +   PDD   P                KPYL+V            RRV YCHT  +  V  +   +L
Sbjct:   46 DDGLALLQSFHSPELEVRGVSVVFGNSALEQGYPNAQEIVKRFGPKG-LEVYKGAASRAELGIENDATRALAAALRREK----LTVLALGPVTNVATVLKNHPELASQIEEIIAVAGRRPGQTFVIG---EGRRPLMDMNFEYDSEGFQILLDSGAPIVLAPFEISAKTPISQRDIERF--------ARVPELADFFLEPLRDYVNWYDTHFQVRAIYPFDTLAVAYLTSPQWIHCDALPVQIQTHPDDI-EPSEN-------------KPYLIVSSELET-----ERRVTYCHTASDAFVPDLMRRLL 319          
BLAST of jgi.p|Trimin1|176502 vs. uniprot
Match: A0A7V9CKX7_9BACT (Nucleoside hydrolase n=1 Tax=Acidobacteria bacterium TaxID=1978231 RepID=A0A7V9CKX7_9BACT)

HSP 1 Score: 146 bits (368), Expect = 9.750e-38
Identity = 95/283 (33.57%), Postives = 135/283 (47.70%), Query Frame = 1
Query:    4 DALCLLACINSPAVELVGVSVTFGNANLTEMVDIARDLLDNFHPAGDLEVHVGAAGPGHHNVTTDAVAAMLNTATLDNGSSALTIVCAGPATNVASLLTLHPGVSTSIQEVVVVAGRRPGQRFTTGAATEHGHPDLNFENDPAAFAVLLASRMPLTYAPFEVSSQVRVTETDLAAALGSGGAVGAYVARVGAPWLRLWRDLFDVRYFHPFDSLAALRVTHPELLACDELESWVALGPDDAAHPGVQGRSGKELGGDETLKPYLLVGDGAPPGHDGPSRRVLYC 852
            D + L+    +  + + GVSVTFGN  L     +A D+++     G L    G +GP      T+A   +      +     LTIV  GP T VA+LL  HP + + +Q VV+VAGRRPGQR  TG     GH D + E DP +F +LL S +P+T    E + QV +T  DLA  + +G      +      WL +W+D+F V  F PF   A   V HP    C+   + +    DD + P ++G +          KPYL+V        D P R V +C
Sbjct:   53 DTMALVQAFGADRLRVAGVSVTFGNVPLVRGFPVAGDVMERLGTGG-LRPWRGPSGPDERFSPTEATELLAERLETEP----LTIVALGPLTTVAALLGRHPHLRSQLQRVVLVAGRRPGQRLLTGTTNPRGHRDPSVELDPDSFQLLLDSSVPVTVIALEAAMQVSLTSADLARFV-TGPRPARTIVPPARSWLGVWKDIFGVDGFVPFGLAAVDLVAHPSQARCEAASAQIEWADDDQSEPRLRGPA-------PATKPYLIVRT------DAPGRTVTWC 316          
BLAST of jgi.p|Trimin1|176502 vs. uniprot
Match: A0A7Y4UIJ2_9BACT (IU_nuc_hydro domain-containing protein n=1 Tax=Acidobacteria bacterium TaxID=1978231 RepID=A0A7Y4UIJ2_9BACT)

HSP 1 Score: 143 bits (360), Expect = 1.080e-36
Identity = 99/288 (34.38%), Postives = 139/288 (48.26%), Query Frame = 1
Query:    1 DDALCLLACINSPAVELVGVSVTFGNANLTEMVDIARDLLDNFHPAGDLEVHVGAAGPGHHNVTTDAVAAMLNTATLDNGSSALTIVCAGPATNVASLLTLHPGVSTSIQEVVVVAGRRPGQRFTTGAATEHGHPDLNFENDPAAFAVLLASRMPLTYAPFEVSSQVRVTETDLAAALGSGGAVGAYVARVGAPWLRLWRDLFDVRYFHPFDSLAALRVTHPELLACDELESWVALGPDDAAHPGVQGRSGKELGGDETLKPYLLVGDGAPPGHDGPSRRVLYCHTPL 864
            DD   L+   +S  + + GVSV FGNA         ++++  F P G L+++ GA       + TDA  A+      +       I+  GP TNVA+++  HP +   I E++ VAGRR GQRF   A    G  D NFE D   F VLL S++PLT AP+EVSS V +   D+   + +G     Y+      WL  W+    +  F+PFD+LA   VTHP+LL  + L   +   PDD   P   G + K+       KPYL+V            R   YC+ PL
Sbjct:   40 DDGFALIQAFHSRELAIRGVSVVFGNAPFDIAWPNGQEIVRRFGPPG-LKIYAGADSAAKLGLETDASRALAAALKKER----FVILALGPVTNVATVIKNHPELHKQIIEIIAVAGRRAGQRFIARADQPRGFRDFNFELDVPGFQVLLDSKVPLTLAPWEVSSHVWLKAEDIER-MRNGNDATKYMVAPAMDWLARWQKDLGLDGFNPFDTLAIAWVTHPQLLKSEVLPIAIQTLPDDTQEP-KPGEAVKQ-------KPYLIVSK-----QHATKRTARYCYEPL 308          
BLAST of jgi.p|Trimin1|176502 vs. uniprot
Match: A0A517YV50_9BACT (Pyrimidine-specific ribonucleoside hydrolase RihB n=1 Tax=Poriferisphaera corsica TaxID=2528020 RepID=A0A517YV50_9BACT)

HSP 1 Score: 135 bits (339), Expect = 2.120e-33
Identity = 94/271 (34.69%), Postives = 132/271 (48.71%), Query Frame = 1
Query:    1 DDALCLLACINSPAVELVGVSVTFGNANLTEMVDIARDLLDNFHPA--GDLEVHVGAAGPGHHNVTTDAVAAMLNTATLDNGSSALTIVCAGPATNVASLLTLHPGVSTSIQEVVVVAGRRPGQRFTTGAATEHGHPDLNFENDPAAFAVLLASRMPLTYAPFEVSSQVRVTETDLAAALGSGGAVGAYVARVGAPWLRLWRDLFDV---RYFHPFDSLAALRVTHPELLACDELESWVALGPDDAAHPGVQGRSGKELGGDETLKPYLLV 798
            DD L ++A  +S  V++ GVSV FGN+ +     I  +++  F P       VHVGA         T+AV AM+          ++ ++  GP TNVA++L   P +   IQ++VVVAGRRPGQ+  +G   E    DLNFEND     VLL S + L   P+EV+SQV +T  DL      GG  G Y+      W   W   F     + F+PFD+LA   V  P +   +E+ + V  G  D          G+E+     +K YL V
Sbjct:   50 DDGLMMIAGFSSERVDVRGVSVVFGNSPVVYGKAIGGNIVRAFGPEYLWSEGVHVGAESDRDLGEETEAVKAMIAGLEGLEADESMVVLATGPVTNVATVLLKRPDLQEKIQKIVVVAGRRPGQKLRSGEMDEIRFTDLNFENDVEGMQVLLRSEVELVLVPWEVASQVWLTRDDLEKLRAEGGGRGIYIYATTQHWFDAWEKEFGAGKEKGFNPFDTLALGYVVDPGMFETEEVVARVERGLSDM--------KGEEM----KMKDYLTV 308          
BLAST of jgi.p|Trimin1|176502 vs. uniprot
Match: A0A7W1YST5_9BACT (Nucleoside hydrolase n=1 Tax=Acidobacteria bacterium TaxID=1978231 RepID=A0A7W1YST5_9BACT)

HSP 1 Score: 129 bits (323), Expect = 6.330e-33
Identity = 71/150 (47.33%), Postives = 83/150 (55.33%), Query Frame = 1
Query:  349 GRRPGQRFTTGAATEHGHPDLNFENDPAAFAVLLASRMPLTYAPFEVSSQVRVTETDLAAALGSGGAVGAYVARVGAPWLRLWRDLFDVRYFHPFDSLAALRVTHPELLACDELESWVALGPDDAAHPGVQGRSGKELGGDETLKPYLLV 798
            GRRPGQRFTTG     GH D NFE DPAAF V+L S +PL   PFE+SS+V + E DL     SG A  A +      WL LWR LF V  FHPFD+LA   +   +   C+ L   +A  PDD   PGVQG   +        KPYLL 
Sbjct:    1 GRRPGQRFTTGTTNAKGHRDFNFELDPAAFRVILESEVPLVLTPFEISSRVWIDEADLTQLARSGAAARA-LEPPARRWLDLWRRLFSVEGFHPFDTLAIGYIVSSDAYQCERLPVSIATLPDDVTEPGVQGTRVES-------KPYLLA 142          
BLAST of jgi.p|Trimin1|176502 vs. uniprot
Match: A0A1B1NVY3_9VIBR (Aldehyde dehydrogenase (NAD(+)) n=4 Tax=Vibrio TaxID=662 RepID=A0A1B1NVY3_9VIBR)

HSP 1 Score: 136 bits (343), Expect = 3.040e-32
Identity = 92/274 (33.58%), Postives = 138/274 (50.36%), Query Frame = 1
Query:    1 DDALCLLACINSPAVELVGVSVTFGNANLTEMVDIARDLLDNFHPAGDLEVHVGA-----AGPGHHNVTTDAVAAMLNTATLDNGSSALTIVCAGPATNVASLLTLHPGVSTSIQEVVVVAGRRPGQ-RFTTGAATEHGHPDLNFENDPAAFAVLLASRMPLTYAPFEVSSQVRVTETDLAAALGSGGAVGAYVARVGAPWLRLWRDLFDVRYFHPFDSLAALRVTHPELLACDELESWVALGPDDAAHPGVQGRSGKELGGDETLKPYLLVGD 804
            DDA  +L+  N+P +++VGVS  FGN +      +A+ + + F P   L V  GA           N  T+A+A  L T        +LTI   GPATN+ASL+ LHP +   I++VV+VA R      F  G+       DLNFE DP A  +LL + +PL + PFE++++  +T  DL A L +   VG Y+ +   PWL +W + F  + F PFD+LAA  + +P      ++   + +  DD            + G   + KPYL+  D
Sbjct:  265 DDAYAMLSLFNAPNLKVVGVSSVFGNTDSNSAFKLAKIVSNRFGPIA-LPVTKGAHQALNINDVQPNEATNALAKALQT-------GSLTIAAIGPATNIASLVLLHPELIERIEQVVLVASRSSANCHFIAGSKQTTPFRDLNFELDPDALRILLENDIPLVFIPFELANKFWLTGKDLDA-LKANPNVGRYLNQHSQPWLNMWCEDFGAQGFSPFDALAASYIINPNQFQSQQVSVEITIAEDDT--------KSHQFGQSNSYKPYLIASD 521          
The following BLAST results are available for this feature:
BLAST of jgi.p|Trimin1|176502 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
A0A835ZEH1_9STRA2.160e-227100.00Inosine/uridine-preferring nucleoside hydrolase do... [more]
A0A6A7L655_9BACT2.430e-6042.16Nucleoside hydrolase n=1 Tax=Luteitalea sp. TaxID=... [more]
A0A5S9IQ58_9BACT9.200e-4638.35Ribosylpyrimidine nucleosidase n=1 Tax=Candidatus ... [more]
A0A359LR79_9BACT5.790e-4239.65IU_nuc_hydro domain-containing protein n=1 Tax=Bry... [more]
A0A523DYN8_9BACT2.570e-3834.30IU_nuc_hydro domain-containing protein n=2 Tax=Bac... [more]
A0A7V9CKX7_9BACT9.750e-3833.57Nucleoside hydrolase n=1 Tax=Acidobacteria bacteri... [more]
A0A7Y4UIJ2_9BACT1.080e-3634.38IU_nuc_hydro domain-containing protein n=1 Tax=Aci... [more]
A0A517YV50_9BACT2.120e-3334.69Pyrimidine-specific ribonucleoside hydrolase RihB ... [more]
A0A7W1YST5_9BACT6.330e-3347.33Nucleoside hydrolase n=1 Tax=Acidobacteria bacteri... [more]
A0A1B1NVY3_9VIBR3.040e-3233.58Aldehyde dehydrogenase (NAD(+)) n=4 Tax=Vibrio Tax... [more]

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
Contig_138contigContig_138:390010..391600 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Tribonema minus UTEX_B_31562021-06-17
Properties
Property NameValue
ProteomeIdTrimin1|176502|e_gw1.138.37.1
Descriptionintracellular protease amidase
COG categoryE
Max annot lvl135623|Vibrionales
EggNOG OGsCOG0346@1|root,COG0693@1|root,COG1957@1|root,COG0346@2|Bacteria,COG0693@2|Bacteria,COG1957@2|Bacteria,1MVTT@1224|Proteobacteria,1RPVK@1236|Gammaproteobacteria,1XVT4@135623|Vibrionales
Evalue6.09e-37
Seed ortholog945543.VIBR0546_21430
Hectar predicted targeting categoryother localisation
TranscriptId176824
TrackFilteredModels1
ProteinId176502
Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesTypePosition
jgi.p|Trimin1|176502gene_14006Tribonema minus UTEX_B_3156 geneContig_138 390010..391600 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
jgi.p|Trimin1|176502Trimin1|176502|e_gw1.138.37.1Tribonema minus UTEX_B_3156 polypeptideContig_138 390010..391600 -


The following exon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
exon_14006_2exon_14006_2Tribonema minus UTEX_B_3156 exonContig_138 390010..390840 -
exon_14006_1exon_14006_1Tribonema minus UTEX_B_3156 exonContig_138 391490..391600 -


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
CDS_14006CDS_14006Tribonema minus UTEX_B_3156 CDSContig_138 391490..391600 -


Sequences
The following sequences are available for this feature:

spliced messenger RNA

>mRNA_14006 ID=mRNA_14006|Name=jgi.p|Trimin1|176502|organism=Tribonema minus UTEX_B_3156 |type=mRNA|length=942bp|location=Sequence derived from alignment at Contig_138:390010..391600- (Tribonema minus UTEX_B_3156 )|Notes=Excludes all bases but those of type(s): exon.  
GATGATGCGCTGTGCCTGCTGGCATGCATCAACAGCCCCGCCGTTGAGCT
GGTGGGTGTGAGCGTCACCTTTGGCAACGCCAACCTGACGGAGATGGTTG
ACATTGCGCGGGATCTCCTCGACAACTTCCACCCTGCAGGGGATCTCGAG
GTCCACGTGGGCGCCGCCGGCCCCGGCCACCACAACGTCACCACGGACGC
CGTCGCAGCGATGCTCAACACAGCAACGCTCGACAATGGCAGCAGCGCGC
TGACCATCGTGTGCGCGGGGCCCGCCACCAACGTCGCCTCGCTGCTCACC
CTGCACCCCGGCGTGTCAACTTCAATTCAGGAAGTTGTCGTGGTGGCGGG
GCGCCGCCCCGGCCAGCGCTTCACCACGGGCGCCGCCACGGAGCACGGCC
ACCCGGACCTGAACTTTGAGAACGACCCGGCGGCGTTCGCGGTGCTGCTG
GCGTCGCGCATGCCGCTGACGTACGCGCCGTTTGAGGTGTCGAGCCAGGT
GCGCGTGACGGAGACGGACCTGGCAGCAGCGCTCGGCAGCGGCGGCGCCG
TGGGCGCCTACGTCGCGCGCGTCGGCGCGCCGTGGCTGCGGCTCTGGCGC
GACCTCTTCGACGTCCGCTACTTCCACCCCTTCGACTCGCTCGCGGCGCT
GCGAGTCACTCACCCGGAGCTACTCGCGTGCGACGAGTTGGAGTCGTGGG
TCGCGCTCGGCCCCGACGACGCCGCGCACCCGGGGGTCCAGGGCCGTAGC
GGAAAGGAACTGGGCGGCGATGAGACATTGAAGCCGTACCTGCTGGTTGG
CGATGGCGCGCCGCCGGGGCACGATGGGCCGTCTAGACGCGTCCTGTACT
GTCACACGCCGCTGGAAGGGGCCGTGCAGGCCATATGGGAGTCGATTCTG
CCGCCGGTAAGGGGTGGCGGGGGGGCAGCGGCGGAGCTGTAG
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protein sequence of jgi.p|Trimin1|176502

>Trimin1|176502|e_gw1.138.37.1 ID=Trimin1|176502|e_gw1.138.37.1|Name=jgi.p|Trimin1|176502|organism=Tribonema minus UTEX_B_3156 |type=polypeptide|length=314bp
DDALCLLACINSPAVELVGVSVTFGNANLTEMVDIARDLLDNFHPAGDLE
VHVGAAGPGHHNVTTDAVAAMLNTATLDNGSSALTIVCAGPATNVASLLT
LHPGVSTSIQEVVVVAGRRPGQRFTTGAATEHGHPDLNFENDPAAFAVLL
ASRMPLTYAPFEVSSQVRVTETDLAAALGSGGAVGAYVARVGAPWLRLWR
DLFDVRYFHPFDSLAALRVTHPELLACDELESWVALGPDDAAHPGVQGRS
GKELGGDETLKPYLLVGDGAPPGHDGPSRRVLYCHTPLEGAVQAIWESIL
PPVRGGGGAAAEL*
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mRNA from alignment at Contig_138:390010..391600-

Legend: polypeptideexonCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_14006 ID=mRNA_14006|Name=jgi.p|Trimin1|176502|organism=Tribonema minus UTEX_B_3156 |type=mRNA|length=1591bp|location=Sequence derived from alignment at Contig_138:390010..391600- (Tribonema minus UTEX_B_3156 )
GATGATGCGCTGTGCCTGCTGGCATGCATCAACAGCCCCGCCGTTGAGCT GGTGGGTGTGAGCGTCACCTTTGGCAACGCCAACCTGACGGAGATGGTTG ACATTGCGCGGGTGAGCACCACTTCGTAGTGCTGAAGTTGACGATCACTC ACAACAACTGTGCAGCACTGCCAACGGGCTGTGGCCAATGCTGTTTGGCA ACACCAATTTGAAGGAGGTGGTTGACATTGCGCGGATGAGCGCCACTGGG TAGTGTTGAAGTTAACCATCACCGACAACAGATGTGTACAGCCGCCGCCA ACTGCTCGTAGGCCGGTTCTGCTTCAATACTTGGTGCACACTGCTCTTGG AAGAGGGAGTATGCTACACATTTCGCCTGTTGTTGAGCAATAGGGGTGTT GGTGCAGCCCTATGGGTAGGGCATGCCGCCTGTGCCTGGTTCAGTGCAAT ACAAACCTAAAGGATAGCTAACGCGACTGAATCACGATGAGCACTTCACG GCTGATGTCGTCGATGCCTTGGCCGTAAGTGTGAAGGCTACTACAGCCTG CTTTATTCAGATGGCCACCTCCAGGCTTAGCATTACATCAGCTGCAGTGA GGGACCCTCTCTCGCAGCTCGCACTGCATGGCAGCTCCTCCCCCTCCTGA CTCTAACCCCCGAGTACCGTTGGCACAGCTGCTGATGCTCAGAGCACGCG CATCGCTCAGCAATACGCTCTCTGACTCTACACCGGCTGCTGCACCCTGC GCCATCGCAGGATCTCCTCGACAACTTCCACCCTGCAGGGGATCTCGAGG TCCACGTGGGCGCCGCCGGCCCCGGCCACCACAACGTCACCACGGACGCC GTCGCAGCGATGCTCAACACAGCAACGCTCGACAATGGCAGCAGCGCGCT GACCATCGTGTGCGCGGGGCCCGCCACCAACGTCGCCTCGCTGCTCACCC TGCACCCCGGCGTGTCAACTTCAATTCAGGAAGTTGTCGTGGTGGCGGGG CGCCGCCCCGGCCAGCGCTTCACCACGGGCGCCGCCACGGAGCACGGCCA CCCGGACCTGAACTTTGAGAACGACCCGGCGGCGTTCGCGGTGCTGCTGG CGTCGCGCATGCCGCTGACGTACGCGCCGTTTGAGGTGTCGAGCCAGGTG CGCGTGACGGAGACGGACCTGGCAGCAGCGCTCGGCAGCGGCGGCGCCGT GGGCGCCTACGTCGCGCGCGTCGGCGCGCCGTGGCTGCGGCTCTGGCGCG ACCTCTTCGACGTCCGCTACTTCCACCCCTTCGACTCGCTCGCGGCGCTG CGAGTCACTCACCCGGAGCTACTCGCGTGCGACGAGTTGGAGTCGTGGGT CGCGCTCGGCCCCGACGACGCCGCGCACCCGGGGGTCCAGGGCCGTAGCG GAAAGGAACTGGGCGGCGATGAGACATTGAAGCCGTACCTGCTGGTTGGC GATGGCGCGCCGCCGGGGCACGATGGGCCGTCTAGACGCGTCCTGTACTG TCACACGCCGCTGGAAGGGGCCGTGCAGGCCATATGGGAGTCGATTCTGC CGCCGGTAAGGGGTGGCGGGGGGGCAGCGGCGGAGCTGTAG
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Coding sequence (CDS) from alignment at Contig_138:390010..391600-

>mRNA_14006 ID=mRNA_14006|Name=jgi.p|Trimin1|176502|organism=Tribonema minus UTEX_B_3156 |type=CDS|length=942bp|location=Sequence derived from alignment at Contig_138:390010..391600- (Tribonema minus UTEX_B_3156 )
GATGATGCGCTGTGCCTGCTGGCATGCATCAACAGCCCCGCCGTTGAGCT
GGTGGGTGTGAGCGTCACCTTTGGCAACGCCAACCTGACGGAGATGGTTG
ACATTGCGCGGGATCTCCTCGACAACTTCCACCCTGCAGGGGATCTCGAG
GTCCACGTGGGCGCCGCCGGCCCCGGCCACCACAACGTCACCACGGACGC
CGTCGCAGCGATGCTCAACACAGCAACGCTCGACAATGGCAGCAGCGCGC
TGACCATCGTGTGCGCGGGGCCCGCCACCAACGTCGCCTCGCTGCTCACC
CTGCACCCCGGCGTGTCAACTTCAATTCAGGAAGTTGTCGTGGTGGCGGG
GCGCCGCCCCGGCCAGCGCTTCACCACGGGCGCCGCCACGGAGCACGGCC
ACCCGGACCTGAACTTTGAGAACGACCCGGCGGCGTTCGCGGTGCTGCTG
GCGTCGCGCATGCCGCTGACGTACGCGCCGTTTGAGGTGTCGAGCCAGGT
GCGCGTGACGGAGACGGACCTGGCAGCAGCGCTCGGCAGCGGCGGCGCCG
TGGGCGCCTACGTCGCGCGCGTCGGCGCGCCGTGGCTGCGGCTCTGGCGC
GACCTCTTCGACGTCCGCTACTTCCACCCCTTCGACTCGCTCGCGGCGCT
GCGAGTCACTCACCCGGAGCTACTCGCGTGCGACGAGTTGGAGTCGTGGG
TCGCGCTCGGCCCCGACGACGCCGCGCACCCGGGGGTCCAGGGCCGTAGC
GGAAAGGAACTGGGCGGCGATGAGACATTGAAGCCGTACCTGCTGGTTGG
CGATGGCGCGCCGCCGGGGCACGATGGGCCGTCTAGACGCGTCCTGTACT
GTCACACGCCGCTGGAAGGGGCCGTGCAGGCCATATGGGAGTCGATTCTG
CCGCCGGTAAGGGGTGGCGGGGGGGCAGCGGCGGAGCTGTAG
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