mRNA_14 (mRNA) Tribonema minus UTEX_B_3156
Overview
Homology
BLAST of jgi.p|Trimin1|139485 vs. uniprot
Match: A0A835YWR0_9STRA (PPR_long domain-containing protein (Fragment) n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A835YWR0_9STRA) HSP 1 Score: 337 bits (864), Expect = 2.410e-117 Identity = 162/162 (100.00%), Postives = 162/162 (100.00%), Query Frame = 1 Query: 1 FNYEYALQAYEKSSHWSGALRLLSHMDNNNTKWTVRACSHALLACGFAGRLNDAFQLIQQMHQRGISPTSGDYLQLIRECHQSDKKVRAAGDSRNGSKQAMELLQHMEQLGVMPNFKHYGAAINVCGKAGDWASAVHIFQQMQHKGVQPNLITWSGIIRAAD 486 FNYEYALQAYEKSSHWSGALRLLSHMDNNNTKWTVRACSHALLACGFAGRLNDAFQLIQQMHQRGISPTSGDYLQLIRECHQSDKKVRAAGDSRNGSKQAMELLQHMEQLGVMPNFKHYGAAINVCGKAGDWASAVHIFQQMQHKGVQPNLITWSGIIRAAD Sbjct: 1 FNYEYALQAYEKSSHWSGALRLLSHMDNNNTKWTVRACSHALLACGFAGRLNDAFQLIQQMHQRGISPTSGDYLQLIRECHQSDKKVRAAGDSRNGSKQAMELLQHMEQLGVMPNFKHYGAAINVCGKAGDWASAVHIFQQMQHKGVQPNLITWSGIIRAAD 162
BLAST of jgi.p|Trimin1|139485 vs. uniprot
Match: A0A835YZD3_9STRA (Uncharacterized protein (Fragment) n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A835YZD3_9STRA) HSP 1 Score: 207 bits (526), Expect = 4.200e-63 Identity = 97/132 (73.48%), Postives = 111/132 (84.09%), Query Frame = 1 Query: 1 FNYEYALQAYEKSSHWSGALRLLSHMDNNNTKWTVRACSHALLACGFAGRLNDAFQLIQQMHQRGISPTSGDYLQLIRECHQSDKKVRAAGDSRNGSKQAMELLQHMEQLGVMPNFKHYGAAINVCGKAGDW 396 F+YEYALQA+EK HWSGAL+LL HMD NN KWTVRAC+HALL CGFAGRLNDAFQLI+QM +RGI+P SGDYLQLI EC +S KKVR AGDSR GSKQAMELLQ M+Q G P+ +H+ A ++ CGKAGDW Sbjct: 60 FDYEYALQAHEKPRHWSGALKLLKHMDANNIKWTVRACNHALLTCGFAGRLNDAFQLIRQMRERGINPASGDYLQLIGECVRSSKKVRDAGDSRGGSKQAMELLQLMKQTGAKPDVRHFTAVVDACGKAGDW 191
BLAST of jgi.p|Trimin1|139485 vs. uniprot
Match: A0A835Z0J2_9STRA (PPR_long domain-containing protein n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A835Z0J2_9STRA) HSP 1 Score: 198 bits (504), Expect = 1.800e-58 Identity = 97/160 (60.62%), Postives = 123/160 (76.88%), Query Frame = 1 Query: 1 FNYEYALQAYEKSSHWSGALRLLSHMDNNNTKWTVRACSHALLACGFAGRLNDAFQLIQQMHQRGISPTSGDYLQLIRECHQSD--KKVRAAGDSRNGSKQAMELLQHMEQLGVMPNFKHYGAAINVCGKAGDWASAVHIFQQMQHKGVQPNLITWSGII 474 F+YEYALQA+EKS HWSGALRLLSHMD N KWT+RACSHALL GFAGR+N A QL+ +M +RG+SP YLQLI EC +S +KVR AGDSR GSKQA+ +LQHM+Q G P+ +H+ A ++ CGKAGDW A+ +FQQMQ + V PN+ +++ +I Sbjct: 132 FDYEYALQAHEKSRHWSGALRLLSHMDKKNIKWTIRACSHALLTLGFAGRMNAALQLLDKMCERGLSPHPDSYLQLIGECRRSSSRQKVRDAGDSRGGSKQAVAMLQHMKQTGTKPDIRHFTAVVDACGKAGDWIDALDVFQQMQLELV-PNVRSYNTLI 290
BLAST of jgi.p|Trimin1|139485 vs. uniprot
Match: A0A836CJC7_9STRA (Uncharacterized protein n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A836CJC7_9STRA) HSP 1 Score: 181 bits (459), Expect = 9.280e-56 Identity = 86/115 (74.78%), Postives = 96/115 (83.48%), Query Frame = 1 Query: 1 FNYEYALQAYEKSSHWSGALRLLSHMDNNNTKWTVRACSHALLACGFAGRLNDAFQLIQQMHQRGISPTSGDYLQLIRECHQSDKKVRAAGDSRNGSKQAMELLQHMEQLGVMPN 345 F+YEYALQA+EK HWSGALRLLSHMD NN KWTVRACSHALL CGFAGRLNDAFQLIQQMH G+ P + +YLQLI EC ++ KVR AGDSR GSKQAME+LQHM+Q G P+ Sbjct: 39 FDYEYALQAHEKPRHWSGALRLLSHMDKNNIKWTVRACSHALLTCGFAGRLNDAFQLIQQMHNHGMRPCAVNYLQLIGECRRNSNKVRDAGDSRGGSKQAMEMLQHMKQTGAKPD 153
BLAST of jgi.p|Trimin1|139485 vs. uniprot
Match: A0A835Z487_9STRA (PPR_long domain-containing protein n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A835Z487_9STRA) HSP 1 Score: 191 bits (486), Expect = 7.170e-55 Identity = 98/147 (66.67%), Postives = 107/147 (72.79%), Query Frame = 1 Query: 1 FNYEYALQAYEKSSHWSGALRLLSHMDNNNTKWTVRACSHALLACGFAGRLNDAFQLIQQMHQRGISPTSGDYLQLIRECHQSDKK--VRAAGDSRNGSKQAMELLQHMEQLGVMPNFKHYGAAINVCGKAGDWASAVHIFQQMQHK 435 F+YE+ALQA+EK HWSGALRLLSHMD NN KWTVRACSHALL GFAGRLN A QL+Q+MHQRG+SP +YLQLI EC + KK VR AGDSR GSKQA AAINVCGKAGDWA+AVHIFQQMQ K Sbjct: 211 FDYEHALQAHEKPRHWSGALRLLSHMDKNNIKWTVRACSHALLTLGFAGRLNAALQLLQKMHQRGLSPDPANYLQLIAECRRHSKKALVRDAGDSRGGSKQAXXXXXXXXXXXXXXXXXXXSAAINVCGKAGDWAAAVHIFQQMQQK 357
BLAST of jgi.p|Trimin1|139485 vs. uniprot
Match: A0A835YW87_9STRA (PPR_long domain-containing protein n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A835YW87_9STRA) HSP 1 Score: 159 bits (401), Expect = 2.000e-45 Identity = 81/136 (59.56%), Postives = 96/136 (70.59%), Query Frame = 1 Query: 1 FNYEYALQAYEKSSH-WSGALRLLSHMDNNNTKWTVRACSHALLACGFAGRLNDAFQLIQQMHQRGISPTSGDYLQLIRECHQSDKKVRAAGDSRNGSKQAMELLQHMEQLGVMPNFKHYGAAINVCGKAGDWASA 405 F+Y+YALQAYE H W GAL++L+ M++ +WT RACSHAL AC FAGRLN A +LI M++RG+SP DYL+LI R GSKQA+EL Q MEQLGVMPNFKHY +AINVCG AGDWASA Sbjct: 26 FDYKYALQAYETPPHNWYGALKVLNEMESKGFQWTSRACSHALHACAFAGRLNHALELIANMYERGLSPYPADYLRLI--------------SDRGGSKQAIELSQSMEQLGVMPNFKHYSSAINVCGTAGDWASA 147
BLAST of jgi.p|Trimin1|139485 vs. uniprot
Match: A0A835Z794_9STRA (Uncharacterized protein n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A835Z794_9STRA) HSP 1 Score: 134 bits (338), Expect = 4.840e-36 Identity = 72/160 (45.00%), Postives = 101/160 (63.12%), Query Frame = 1 Query: 4 NYEYALQAYEKSSHWSGALRLLSHMDNNNTKWTVRACSHALLACGFAGRLNDAFQLIQQMHQRGISPTSGDYLQLIRECHQSDKKVRAAGDSRNGSKQAMELLQHMEQLGVMPNFKHYGAAINVCGKAGDWASAVHIFQQMQHKGV-QPNLITWSGIIRA 480 +YE+AL+A+EK HWSGAL+LLS MD N WTVRACSHALL CG AGRLNDA QL+++M +RG+ P D+L LI EC +S +K+RAA D + + M++L + PN Y A IN AGD A + M+ + +P+ I ++ +++ Sbjct: 64 DYEHALRAHEKPHHWSGALKLLSDMDKNEITWTVRACSHALLICGVAGRLNDALQLVEEMRKRGMRPGPVDFLHLIGECRRSRRKLRAAED----------IWREMQRLKITPNTWSYSALINCYTVAGDPEKAEAVLAIMRQSTMAKPDAIAYNRYVQS 213
BLAST of jgi.p|Trimin1|139485 vs. uniprot
Match: A0A835YWP6_9STRA (PPR_long domain-containing protein n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A835YWP6_9STRA) HSP 1 Score: 123 bits (309), Expect = 5.410e-32 Identity = 62/101 (61.39%), Postives = 77/101 (76.24%), Query Frame = 1 Query: 181 MHQRGISPTSGDYLQLIRECHQSDKKVRAAGDSRNGSKQAMELLQHMEQLGV-MPNFKHYGAAINVCGKAGDWASAVHIFQQMQHKGVQPNLITWSGIIRA 480 M +RGI P D+LQL+ C ++ +K+RAAGD+R GS QAMELLQ MEQ GV P+FKHY AAINVCGKAGDW SAVHIF+QMQ +GV N+ W+ ++ A Sbjct: 1 MLERGIIPGPVDFLQLLGACSRNLRKLRAAGDTRGGSAQAMELLQLMEQPGVEKPDFKHYSAAINVCGKAGDWTSAVHIFEQMQLQGVHANISCWTALLDA 101
BLAST of jgi.p|Trimin1|139485 vs. uniprot
Match: A0A836CEM5_9STRA (PPR_long domain-containing protein n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A836CEM5_9STRA) HSP 1 Score: 125 bits (314), Expect = 3.390e-31 Identity = 62/135 (45.93%), Postives = 87/135 (64.44%), Query Frame = 1 Query: 76 MDNNNTKWTVRACSHALLACGFAGRLNDAFQLIQQMHQRGISPTSGDYLQLIRECHQSDKKVRAAGDSRNGSKQAMELLQHMEQLGVMPNFKHYGAAINVCGKAGDWASAVHIFQQMQHKGVQPNLITWSGIIRA 480 M+ + +WT AC L+ACG AGRLNDA QLI M +SP YL LI++C ++ A GDSR GSK+A+ELLQ M+ G +PN +H+ AAI VC + SA+ IF+ MQH+G++P+L +W ++ A Sbjct: 1 MEQDGFRWTQVACGAVLVACGKAGRLNDAVQLIDNMRNHRVSPDGRTYLTLIQQCVRNSASTHA-GDSRGGSKRALELLQLMKDAGPVPNIRHFTAAIMVCVAERNGISAITIFRMMQHEGIRPDLQSWGALLHA 134
BLAST of jgi.p|Trimin1|139485 vs. uniprot
Match: A0A835ZB42_9STRA (PPR_long domain-containing protein n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A835ZB42_9STRA) HSP 1 Score: 115 bits (287), Expect = 6.480e-30 Identity = 62/121 (51.24%), Postives = 77/121 (63.64%), Query Frame = 1 Query: 67 LSHMDNNNTKWTVRACSHALLACGFAGRLNDAFQLIQQMHQRGISPTSGDYLQLIRECHQSDKKVRAAGDSRNGSKQAMELLQHMEQLGVMPNFKHYGAAINVCGKAGDWASAVHIFQQMQ 429 L M+ WT RACS LLACG AGRLN A QLI +M +R SP DYL+LI C + +RA GD R GSKQA+E LQ M+ G +P+ +HY AA+ VC GD A AV+IF+ M+ Sbjct: 6 LHEMEREGFGWTQRACSTVLLACGKAGRLNAALQLIDEMEKRTFSPNDVDYLKLIEACVRGKNVIRA-GD-RGGSKQALEFLQRMQDKGPVPDIRHYAAAMKVCVTEGDSAKAVNIFRSMR 124 The following BLAST results are available for this feature:
BLAST of jgi.p|Trimin1|139485 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90) Total hits: 18
Pagesback to topAlignments
The following features are aligned
Analyses
This mRNA is derived from or has results from the following analyses
Properties
Relationships
This mRNA is a part of the following gene feature(s):
The following exon feature(s) are a part of this mRNA:
The following CDS feature(s) are a part of this mRNA:
The following polypeptide feature(s) derives from this mRNA:
Sequences
The following sequences are available for this feature:
spliced messenger RNA >mRNA_14 ID=mRNA_14|Name=jgi.p|Trimin1|139485|organism=Tribonema minus UTEX_B_3156 |type=mRNA|length=486bp|location=Sequence derived from alignment at Contig_3:127462..129711+ (Tribonema minus UTEX_B_3156 )|Notes=Excludes all bases but those of type(s): exon. TTCAATTACGAGTACGCCCTTCAGGCGTACGAGAAGTCCAGCCACTGGTCback to top protein sequence of jgi.p|Trimin1|139485 >Trimin1|139485|gw1.3.228.1 ID=Trimin1|139485|gw1.3.228.1|Name=jgi.p|Trimin1|139485|organism=Tribonema minus UTEX_B_3156 |type=polypeptide|length=162bp FNYEYALQAYEKSSHWSGALRLLSHMDNNNTKWTVRACSHALLACGFAGRback to top mRNA from alignment at Contig_3:127462..129711+ Legend: exonpolypeptideCDS Hold the cursor over a type above to highlight its positions in the sequence below.>mRNA_14 ID=mRNA_14|Name=jgi.p|Trimin1|139485|organism=Tribonema minus UTEX_B_3156 |type=mRNA|length=2250bp|location=Sequence derived from alignment at Contig_3:127462..129711+ (Tribonema minus UTEX_B_3156 )back to top Coding sequence (CDS) from alignment at Contig_3:127462..129711+ >mRNA_14 ID=mRNA_14|Name=jgi.p|Trimin1|139485|organism=Tribonema minus UTEX_B_3156 |type=CDS|length=486bp|location=Sequence derived from alignment at Contig_3:127462..129711+ (Tribonema minus UTEX_B_3156 )back to top |