mRNA_13952 (mRNA) Tribonema minus UTEX_B_3156

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
Namejgi.p|Trimin1|175132
Unique NamemRNA_13952
TypemRNA
OrganismTribonema minus UTEX_B_3156 (Tribonema minus UTEX_B_3156 )
Homology
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BLAST of jgi.p|Trimin1|175132 vs. uniprot
Match: A0A836CMJ1_9STRA (C2 domain-containing protein n=2 Tax=Tribonema minus TaxID=303371 RepID=A0A836CMJ1_9STRA)

HSP 1 Score: 147 bits (370), Expect = 6.580e-45
Identity = 70/70 (100.00%), Postives = 70/70 (100.00%), Query Frame = 1 
Query:    1 MFASGSDPFLVLRCNGAVRRTATVRSLLQPVFDEHFDTDMTDPAAQLVVECWDENSFGSDFIGVATVHLR 210
            MFASGSDPFLVLRCNGAVRRTATVRSLLQPVFDEHFDTDMTDPAAQLVVECWDENSFGSDFIGVATVHLR
Sbjct:    1 MFASGSDPFLVLRCNGAVRRTATVRSLLQPVFDEHFDTDMTDPAAQLVVECWDENSFGSDFIGVATVHLR 70
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BLAST of jgi.p|Trimin1|175132 vs. uniprot
Match: A0A6I9TEF4_SESIN (Phospholipase D n=1 Tax=Sesamum indicum TaxID=4182 RepID=A0A6I9TEF4_SESIN)

HSP 1 Score: 51.2 bits (121), Expect = 9.770e-6
Identity = 25/66 (37.88%), Postives = 41/66 (62.12%), Query Frame = 1 
Query:   16 SDPFLVLRCNGA-VRRTATVRSLLQPVFDEHFDTDMTDPAAQLVVECWDENSFGSDFIGVATVHLR 210
            SDP++++   GA V RT  + +   PV++E+F   +  P +Q+  E  D + FG+D IGVA+VH +
Sbjct:   68 SDPYVIVCLAGARVARTRIINNSQNPVWNENFKIPLAHPVSQVEFEVKDNDMFGADLIGVASVHAK 133
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BLAST of jgi.p|Trimin1|175132 vs. uniprot
Match: A0A103YDW2_CYNCS (Phospholipase D n=2 Tax=Cynara cardunculus var. scolymus TaxID=59895 RepID=A0A103YDW2_CYNCS)

HSP 1 Score: 50.4 bits (119), Expect = 1.830e-5
Identity = 26/66 (39.39%), Postives = 41/66 (62.12%), Query Frame = 1 
Query:   16 SDPFLVLRCNGA-VRRTATVRSLLQPVFDEHFDTDMTDPAAQLVVECWDENSFGSDFIGVATVHLR 210
            SDP++ +  +GA V RT  + +   PV++EHF T +  P AQ+  +  D + FG+D IGVAT+  +
Sbjct:   65 SDPYVSVCLSGATVARTRVISNSQYPVWNEHFVTLLAHPVAQVEFQVKDNDVFGADMIGVATISAK 130
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BLAST of jgi.p|Trimin1|175132 vs. uniprot
Match: A0A068UFK6_COFCA (C2 domain-containing protein n=1 Tax=Coffea canephora TaxID=49390 RepID=A0A068UFK6_COFCA)

HSP 1 Score: 50.1 bits (118), Expect = 2.410e-5
Identity = 25/63 (39.68%), Postives = 39/63 (61.90%), Query Frame = 1 
Query:   16 SDPFLVLRCNGA-VRRTATVRSLLQPVFDEHFDTDMTDPAAQLVVECWDENSFGSDFIGVATV 201
            SDP++ +   GA V RT  + +   P+++EHF   +  P +Q+  +  D + FG+DFIGVATV
Sbjct:   69 SDPYVTVCLAGATVARTRVIPNSQDPIWNEHFKIPLAHPVSQVEFQVKDNDVFGADFIGVATV 131
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BLAST of jgi.p|Trimin1|175132 vs. uniprot
Match: A0A2G9G7V7_9LAMI (Phospholipase D n=1 Tax=Handroanthus impetiginosus TaxID=429701 RepID=A0A2G9G7V7_9LAMI)

HSP 1 Score: 50.1 bits (118), Expect = 2.500e-5
Identity = 26/66 (39.39%), Postives = 39/66 (59.09%), Query Frame = 1 
Query:   16 SDPFLVLRCNGA-VRRTATVRSLLQPVFDEHFDTDMTDPAAQLVVECWDENSFGSDFIGVATVHLR 210
            SDP++ +   GA V RT  + +   PV+DEHF   +  P +Q+  E  D + FG++ IGVATV  +
Sbjct:   67 SDPYVKVCLAGACVARTRVISNSQNPVWDEHFKIPLAHPVSQVEFEVKDNDMFGAELIGVATVPAK 132
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BLAST of jgi.p|Trimin1|175132 vs. uniprot
Match: UPI000F60A8A6 (phospholipase D delta-like n=1 Tax=Coffea eugenioides TaxID=49369 RepID=UPI000F60A8A6)

HSP 1 Score: 50.1 bits (118), Expect = 2.500e-5
Identity = 25/63 (39.68%), Postives = 39/63 (61.90%), Query Frame = 1 
Query:   16 SDPFLVLRCNGA-VRRTATVRSLLQPVFDEHFDTDMTDPAAQLVVECWDENSFGSDFIGVATV 201
            SDP++ +   GA V RT  + +   P+++EHF   +  P +Q+  +  D + FG+DFIGVATV
Sbjct:   69 SDPYVTVCLAGATVARTRVIPNSQDPIWNEHFKIPLAHPVSQVEFQVKDNDVFGADFIGVATV 131
[Close]
BLAST of jgi.p|Trimin1|175132 vs. uniprot
Match: A0A7S4EDA4_9STRA (Hypothetical protein n=1 Tax=Pelagomonas calceolata TaxID=35677 RepID=A0A7S4EDA4_9STRA)

HSP 1 Score: 50.1 bits (118), Expect = 2.520e-5
Identity = 24/58 (41.38%), Postives = 35/58 (60.34%), Query Frame = 1 
Query:   16 SDPFLVLRCNGAVRRTATVRSLLQPVFDEHFDTDMTDPAAQLVVECWDENSFGSDFIG 189
            SDPF+V+RC+GA  ++  V   L PVFDE     + D  A + +E  D++  GSD +G
Sbjct:  200 SDPFVVVRCDGASAQSRVVSKNLHPVFDELLSLRVEDGTAPISIEVRDKDMVGSDLLG 257
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BLAST of jgi.p|Trimin1|175132 vs. uniprot
Match: A0A165Y0N0_DAUCS (Phospholipase D n=1 Tax=Daucus carota subsp. sativus TaxID=79200 RepID=A0A165Y0N0_DAUCS)

HSP 1 Score: 49.7 bits (117), Expect = 3.420e-5
Identity = 24/66 (36.36%), Postives = 40/66 (60.61%), Query Frame = 1 
Query:   16 SDPFLVLRCNGA-VRRTATVRSLLQPVFDEHFDTDMTDPAAQLVVECWDENSFGSDFIGVATVHLR 210
            SDP++ +   GA V RT  + +   PV++EHF   +  P +Q+     D ++FG+DFIG+A+V  +
Sbjct:   66 SDPYVTVCLGGATVARTRVISNNQNPVWNEHFQIPLAHPVSQIDFVVKDNDTFGADFIGIASVSAQ 131
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BLAST of jgi.p|Trimin1|175132 vs. uniprot
Match: A0A445K3G2_GLYSO (Phospholipase D n=2 Tax=Glycine subgen. Soja TaxID=1462606 RepID=A0A445K3G2_GLYSO)

HSP 1 Score: 49.3 bits (116), Expect = 4.630e-5
Identity = 26/63 (41.27%), Postives = 37/63 (58.73%), Query Frame = 1 
Query:   16 SDPFLVLRCNGA-VRRTATVRSLLQPVFDEHFDTDMTDPAAQLVVECWDENSFGSDFIGVATV 201
            SDP++ +   GA V RT  + +   P +DEHF   +  PA+Q+     D + FG+D IGVATV
Sbjct:   68 SDPYVTVCLAGATVARTRVISNSQNPTWDEHFKIPLAHPASQVEFYVKDNDMFGADLIGVATV 130
[Close]
BLAST of jgi.p|Trimin1|175132 vs. uniprot
Match: A0A5J5ACQ1_9ASTE (Phospholipase D n=2 Tax=Nyssaceae TaxID=4289 RepID=A0A5J5ACQ1_9ASTE)

HSP 1 Score: 49.3 bits (116), Expect = 4.680e-5
Identity = 25/66 (37.88%), Postives = 38/66 (57.58%), Query Frame = 1 
Query:   16 SDPFLVLRCNGA-VRRTATVRSLLQPVFDEHFDTDMTDPAAQLVVECWDENSFGSDFIGVATVHLR 210
            SDP++ +   GA V RT  + +   PV+DEHF   +  P + +  +  D + FG+D IGVATV  +
Sbjct:   66 SDPYVTVCLAGATVARTRVISNSQNPVWDEHFKIPLAHPVSHIEFQVKDNDVFGADLIGVATVSAQ 131
The following BLAST results are available for this feature:
BLAST of jgi.p|Trimin1|175132 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 16
Match NameE-valueIdentityDescription
A0A836CMJ1_9STRA6.580e-45100.00C2 domain-containing protein n=2 Tax=Tribonema min... [more]
A0A6I9TEF4_SESIN9.770e-637.88Phospholipase D n=1 Tax=Sesamum indicum TaxID=4182... [more]
A0A103YDW2_CYNCS1.830e-539.39Phospholipase D n=2 Tax=Cynara cardunculus var. sc... [more]
A0A068UFK6_COFCA2.410e-539.68C2 domain-containing protein n=1 Tax=Coffea caneph... [more]
A0A2G9G7V7_9LAMI2.500e-539.39Phospholipase D n=1 Tax=Handroanthus impetiginosus... [more]
UPI000F60A8A62.500e-539.68phospholipase D delta-like n=1 Tax=Coffea eugenioi... [more]
A0A7S4EDA4_9STRA2.520e-541.38Hypothetical protein n=1 Tax=Pelagomonas calceolat... [more]
A0A165Y0N0_DAUCS3.420e-536.36Phospholipase D n=1 Tax=Daucus carota subsp. sativ... [more]
A0A445K3G2_GLYSO4.630e-541.27Phospholipase D n=2 Tax=Glycine subgen. Soja TaxID... [more]
A0A5J5ACQ1_9ASTE4.680e-537.88Phospholipase D n=2 Tax=Nyssaceae TaxID=4289 RepID... [more]

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
Contig_122contigContig_122:433991..434203 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Tribonema minus UTEX_B_31562021-06-17
Properties
Property NameValue
ProteomeIdTrimin1|175132|e_gw1.122.117.1
BRITEko00000,ko00001,ko00002,ko01000,ko04121,ko04147
KEGG rclassRC00002
KEGG ReactionR00127,R01547,R11319
KEGG ModuleM00049
KEGG Pathwayko00230,ko00730,ko01100,ko01110,ko01130,map00230,map00730,map01100,map01110,map01130
KEGG koko:K00939,ko:K10314
EC2.7.4.3
GOsGO:0000151,GO:0005575,GO:0005622,GO:0005623,GO:0005737,GO:0006508,GO:0006511,GO:0006807,GO:0008150,GO:0008152,GO:0009056,GO:0009057,GO:0009987,GO:0010498,GO:0019005,GO:0019538,GO:0019941,GO:0030163,GO:0031146,GO:0031461,GO:0032991,GO:0043087,GO:0043161,GO:0043170,GO:0043632,GO:0044237,GO:0044238,GO:0044248,GO:0044257,GO:0044260,GO:0044265,GO:0044267,GO:0044424,GO:0044464,GO:0050790,GO:0051336,GO:0051603,GO:0065007,GO:0065009,GO:0071704,GO:1901564,GO:1901565,GO:1901575,GO:1902494,GO:1990234
Preferred nameFBXO39
DescriptionF-box LRR-repeat protein
COG categoryB
Max annot lvl2759|Eukaryota
EggNOG OGsCOG4642@1|root,KOG1032@1|root,KOG1947@1|root,KOG0231@2759|Eukaryota,KOG1032@2759|Eukaryota,KOG1947@2759|Eukaryota
Evalue8.95e-10
Seed ortholog2880.D7FQA7
Hectar predicted targeting categoryother localisation
TranscriptId175454
TrackFilteredModels1
ProteinId175132
Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesTypePosition
jgi.p|Trimin1|175132gene_13952Tribonema minus UTEX_B_3156 geneContig_122 433991..434203 +


The following exon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
exon_13952_1exon_13952_1Tribonema minus UTEX_B_3156 exonContig_122 433991..434203 +


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
CDS_13952CDS_13952Tribonema minus UTEX_B_3156 CDSContig_122 433991..434203 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
jgi.p|Trimin1|175132Trimin1|175132|e_gw1.122.117.1Tribonema minus UTEX_B_3156 polypeptideContig_122 433991..434203 +


Sequences
The following sequences are available for this feature:

spliced messenger RNA

>mRNA_13952 ID=mRNA_13952|Name=jgi.p|Trimin1|175132|organism=Tribonema minus UTEX_B_3156 |type=mRNA|length=213bp|location=Sequence derived from alignment at Contig_122:433991..434203+ (Tribonema minus UTEX_B_3156 )|Notes=Excludes all bases but those of type(s): exon.  
ATGTTCGCCAGCGGCAGCGACCCATTCCTTGTGCTGCGCTGCAACGGCGC
GGTGCGGCGCACGGCGACGGTGCGCTCGTTGCTGCAGCCGGTGTTCGATG
AGCACTTCGACACTGACATGACAGACCCTGCTGCGCAGCTCGTGGTGGAG
TGCTGGGACGAGAACAGCTTCGGCAGCGACTTCATTGGCGTCGCGACCGT
GCACTTGAGGTGA
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protein sequence of jgi.p|Trimin1|175132

>Trimin1|175132|e_gw1.122.117.1 ID=Trimin1|175132|e_gw1.122.117.1|Name=jgi.p|Trimin1|175132|organism=Tribonema minus UTEX_B_3156 |type=polypeptide|length=71bp
MFASGSDPFLVLRCNGAVRRTATVRSLLQPVFDEHFDTDMTDPAAQLVVE
CWDENSFGSDFIGVATVHLR*
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mRNA from alignment at Contig_122:433991..434203+

Legend: exonpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_13952 ID=mRNA_13952|Name=jgi.p|Trimin1|175132|organism=Tribonema minus UTEX_B_3156 |type=mRNA|length=213bp|location=Sequence derived from alignment at Contig_122:433991..434203+ (Tribonema minus UTEX_B_3156 )
ATGTTCGCCAGCGGCAGCGACCCATTCCTTGTGCTGCGCTGCAACGGCGC
GGTGCGGCGCACGGCGACGGTGCGCTCGTTGCTGCAGCCGGTGTTCGATG
AGCACTTCGACACTGACATGACAGACCCTGCTGCGCAGCTCGTGGTGGAG
TGCTGGGACGAGAACAGCTTCGGCAGCGACTTCATTGGCGTCGCGACCGT
GCACTTGAGGTGA
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Coding sequence (CDS) from alignment at Contig_122:433991..434203+

>mRNA_13952 ID=mRNA_13952|Name=jgi.p|Trimin1|175132|organism=Tribonema minus UTEX_B_3156 |type=CDS|length=213bp|location=Sequence derived from alignment at Contig_122:433991..434203+ (Tribonema minus UTEX_B_3156 )
ATGTTCGCCAGCGGCAGCGACCCATTCCTTGTGCTGCGCTGCAACGGCGC
GGTGCGGCGCACGGCGACGGTGCGCTCGTTGCTGCAGCCGGTGTTCGATG
AGCACTTCGACACTGACATGACAGACCCTGCTGCGCAGCTCGTGGTGGAG
TGCTGGGACGAGAACAGCTTCGGCAGCGACTTCATTGGCGTCGCGACCGT
GCACTTGAGGTGA
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