mRNA_13921 (mRNA) Tribonema minus UTEX_B_3156

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
Namejgi.p|Trimin1|151040
Unique NamemRNA_13921
TypemRNA
OrganismTribonema minus UTEX_B_3156 (Tribonema minus UTEX_B_3156 )
Homology
[Close]
BLAST of jgi.p|Trimin1|151040 vs. uniprot
Match: A0A836CLD1_9STRA (Uncharacterized protein (Fragment) n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A836CLD1_9STRA)

HSP 1 Score: 160 bits (406), Expect = 5.870e-50
Identity = 85/85 (100.00%), Postives = 85/85 (100.00%), Query Frame = 1 
Query:    1 NELVSRLAVFFTFLFVATWPLFPVLIQWQPWPLRSAVAFVLLLSVLAWVLVVKSGSLFSAIVSSWLTLALTGLTCYEYTTSQMRM 255
            NELVSRLAVFFTFLFVATWPLFPVLIQWQPWPLRSAVAFVLLLSVLAWVLVVKSGSLFSAIVSSWLTLALTGLTCYEYTTSQMRM
Sbjct:    1 NELVSRLAVFFTFLFVATWPLFPVLIQWQPWPLRSAVAFVLLLSVLAWVLVVKSGSLFSAIVSSWLTLALTGLTCYEYTTSQMRM 85
[Close]
BLAST of jgi.p|Trimin1|151040 vs. uniprot
Match: A0A836CR96_9STRA (Uncharacterized protein n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A836CR96_9STRA)

HSP 1 Score: 100 bits (250), Expect = 1.220e-25
Identity = 50/84 (59.52%), Postives = 67/84 (79.76%), Query Frame = 1 
Query:    1 NELVSRLAVFFTFLFVATWPLFPVLIQWQPWPLRSAVAFVLLLSVLAWVLVVKSGSLFSAIVSSWLTLALTGLTCYEYTTSQMR 252
            +  +S+L +F  FL++ATWPL PVL+QWQPWPL + ++F+LLL  LAWV+VV+S  L +A++SS+LTL LTGLTCYEY  SQ R
Sbjct:   44 DPFLSQLYIFLIFLYIATWPLLPVLVQWQPWPLTATLSFLLLLCALAWVVVVESRGLPAAVLSSFLTLLLTGLTCYEYRASQAR 127
[Close]
BLAST of jgi.p|Trimin1|151040 vs. uniprot
Match: D8LT47_ECTSI (Uncharacterized protein n=2 Tax=Ectocarpus TaxID=2879 RepID=D8LT47_ECTSI)

HSP 1 Score: 94.7 bits (234), Expect = 3.360e-23
Identity = 46/85 (54.12%), Postives = 65/85 (76.47%), Query Frame = 1 
Query:    1 NELVSRLAVFFTFLFVATWPLFPVLIQWQPWPLRSAVAFVLLLSVLAWVLVVKSGSLFSAIVSSWLTLALTGLTCYEYTTSQMRM 255
            + L +++     FLFVA WP  P+L+ W+PW  ++ +AF+LLL  LAWVLV +S S+F+A++SSWLTLALTGLT +EYTT Q+R+
Sbjct:   43 SRLSAKVCTVLLFLFVAAWPFAPILVHWKPWGSQATLAFLLLLLTLAWVLVARSHSIFAALLSSWLTLALTGLTAWEYTTEQVRL 127
The following BLAST results are available for this feature:
BLAST of jgi.p|Trimin1|151040 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 3
Match NameE-valueIdentityDescription
A0A836CLD1_9STRA5.870e-50100.00Uncharacterized protein (Fragment) n=1 Tax=Tribone... [more]
A0A836CR96_9STRA1.220e-2559.52Uncharacterized protein n=1 Tax=Tribonema minus Ta... [more]
D8LT47_ECTSI3.360e-2354.12Uncharacterized protein n=2 Tax=Ectocarpus TaxID=2... [more]
back to top
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
Contig_122contigContig_122:207263..207517 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Tribonema minus UTEX_B_31562021-06-17
Properties
Property NameValue
ProteomeIdTrimin1|151040|gw1.122.116.1
Hectar predicted targeting categorysignal anchor
TranscriptId151362
TrackFilteredModels1
ProteinId151040
Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesTypePosition
jgi.p|Trimin1|151040gene_13921Tribonema minus UTEX_B_3156 geneContig_122 207263..207517 -


The following exon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
exon_13921_1exon_13921_1Tribonema minus UTEX_B_3156 exonContig_122 207263..207517 -


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
CDS_13921CDS_13921Tribonema minus UTEX_B_3156 CDSContig_122 207263..207517 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
jgi.p|Trimin1|151040Trimin1|151040|gw1.122.116.1Tribonema minus UTEX_B_3156 polypeptideContig_122 207263..207517 -


Sequences
The following sequences are available for this feature:

spliced messenger RNA

>mRNA_13921 ID=mRNA_13921|Name=jgi.p|Trimin1|151040|organism=Tribonema minus UTEX_B_3156 |type=mRNA|length=255bp|location=Sequence derived from alignment at Contig_122:207263..207517- (Tribonema minus UTEX_B_3156 )|Notes=Excludes all bases but those of type(s): exon.  
AATGAGCTCGTGTCGCGGCTTGCAGTGTTCTTCACGTTCCTGTTCGTAGC
GACGTGGCCGCTGTTCCCCGTGCTGATCCAGTGGCAGCCCTGGCCGCTGC
GCTCCGCCGTGGCCTTTGTTCTGCTGCTGAGCGTGCTGGCGTGGGTGCTG
GTCGTCAAGTCCGGCAGCCTCTTCTCGGCCATCGTCTCCAGCTGGCTCAC
GCTCGCGCTGACGGGCCTGACGTGCTACGAGTACACCACCAGCCAGATGA
GGATG
back to top

protein sequence of jgi.p|Trimin1|151040

>Trimin1|151040|gw1.122.116.1 ID=Trimin1|151040|gw1.122.116.1|Name=jgi.p|Trimin1|151040|organism=Tribonema minus UTEX_B_3156 |type=polypeptide|length=85bp
NELVSRLAVFFTFLFVATWPLFPVLIQWQPWPLRSAVAFVLLLSVLAWVL
VVKSGSLFSAIVSSWLTLALTGLTCYEYTTSQMRM
back to top

mRNA from alignment at Contig_122:207263..207517-

Legend: exonpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_13921 ID=mRNA_13921|Name=jgi.p|Trimin1|151040|organism=Tribonema minus UTEX_B_3156 |type=mRNA|length=255bp|location=Sequence derived from alignment at Contig_122:207263..207517- (Tribonema minus UTEX_B_3156 )
AATGAGCTCGTGTCGCGGCTTGCAGTGTTCTTCACGTTCCTGTTCGTAGC
GACGTGGCCGCTGTTCCCCGTGCTGATCCAGTGGCAGCCCTGGCCGCTGC
GCTCCGCCGTGGCCTTTGTTCTGCTGCTGAGCGTGCTGGCGTGGGTGCTG
GTCGTCAAGTCCGGCAGCCTCTTCTCGGCCATCGTCTCCAGCTGGCTCAC
GCTCGCGCTGACGGGCCTGACGTGCTACGAGTACACCACCAGCCAGATGA
GGATG
back to top

Coding sequence (CDS) from alignment at Contig_122:207263..207517-

>mRNA_13921 ID=mRNA_13921|Name=jgi.p|Trimin1|151040|organism=Tribonema minus UTEX_B_3156 |type=CDS|length=255bp|location=Sequence derived from alignment at Contig_122:207263..207517- (Tribonema minus UTEX_B_3156 )
AATGAGCTCGTGTCGCGGCTTGCAGTGTTCTTCACGTTCCTGTTCGTAGC
GACGTGGCCGCTGTTCCCCGTGCTGATCCAGTGGCAGCCCTGGCCGCTGC
GCTCCGCCGTGGCCTTTGTTCTGCTGCTGAGCGTGCTGGCGTGGGTGCTG
GTCGTCAAGTCCGGCAGCCTCTTCTCGGCCATCGTCTCCAGCTGGCTCAC
GCTCGCGCTGACGGGCCTGACGTGCTACGAGTACACCACCAGCCAGATGA
GGATG
back to top