mRNA_1390 (mRNA) Tribonema minus UTEX_B_3156

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
Namejgi.p|Trimin1|161862
Unique NamemRNA_1390
TypemRNA
OrganismTribonema minus UTEX_B_3156 (Tribonema minus UTEX_B_3156 )
Homology
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BLAST of jgi.p|Trimin1|161862 vs. uniprot
Match: A0A835ZBW1_9STRA (Uncharacterized protein n=2 Tax=Tribonema minus TaxID=303371 RepID=A0A835ZBW1_9STRA)

HSP 1 Score: 368 bits (944), Expect = 8.440e-129
Identity = 184/184 (100.00%), Postives = 184/184 (100.00%), Query Frame = 1 
Query:    1 MRVLAFDIGCLNFAACLVEVSPSTNPQVIACCNVVLGASKECVASLIAAMHTQIRNNPFMTAAGCDAVLIEQQCGHASPKNFALSAALYMFYQQRLDAGAIGSLQFVNPRVKFSRLAKMNLPALANYKDQLVQCRGKELKQLSVNCAIELARAWNCSVFQDAMMRAKKQDDLSDAMLYAVTHVI 552
            MRVLAFDIGCLNFAACLVEVSPSTNPQVIACCNVVLGASKECVASLIAAMHTQIRNNPFMTAAGCDAVLIEQQCGHASPKNFALSAALYMFYQQRLDAGAIGSLQFVNPRVKFSRLAKMNLPALANYKDQLVQCRGKELKQLSVNCAIELARAWNCSVFQDAMMRAKKQDDLSDAMLYAVTHVI
Sbjct:    1 MRVLAFDIGCLNFAACLVEVSPSTNPQVIACCNVVLGASKECVASLIAAMHTQIRNNPFMTAAGCDAVLIEQQCGHASPKNFALSAALYMFYQQRLDAGAIGSLQFVNPRVKFSRLAKMNLPALANYKDQLVQCRGKELKQLSVNCAIELARAWNCSVFQDAMMRAKKQDDLSDAMLYAVTHVI 184
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BLAST of jgi.p|Trimin1|161862 vs. uniprot
Match: A0A836CLZ6_9STRA (Uncharacterized protein n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A836CLZ6_9STRA)

HSP 1 Score: 266 bits (679), Expect = 1.670e-79
Identity = 134/164 (81.71%), Postives = 147/164 (89.63%), Query Frame = 1 
Query:   61 SPSTNPQ--VIACCNVVLGASKECVASLIAAMHTQIRNNPFMTAAGCDAVLIEQQCGHASPKNFALSAALYMFYQQRLDAGAIGSLQFVNPRVKFSRLAKMNLPALANYKDQLVQCRGKELKQLSVNCAIELARAWNCSVFQDAMMRAKKQDDLSDAMLYAVTH 546
            S STN    V+ACCNV LG SK C+ASLIAAMH Q+ ++PFMTA GC AVLIEQQCGH SPKNFALSAALYMFYQQRLDAGAI SLQFVNPRVKFSRLA+M+LPALA +KD+LVQCRGKELK+LSV CAIELARAWNC+VFQ+AM+R KKQDDLSDAMLYAVTH
Sbjct:  998 STSTNSMSPVLACCNVKLGDSKACIASLIAAMHAQMCDHPFMTADGCGAVLIEQQCGHVSPKNFALSAALYMFYQQRLDAGAISSLQFVNPRVKFSRLAQMDLPALAQFKDELVQCRGKELKKLSVKCAIELARAWNCTVFQEAMIRVKKQDDLSDAMLYAVTH 1161
The following BLAST results are available for this feature:
BLAST of jgi.p|Trimin1|161862 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 2
Match NameE-valueIdentityDescription
A0A835ZBW1_9STRA8.440e-129100.00Uncharacterized protein n=2 Tax=Tribonema minus Ta... [more]
A0A836CLZ6_9STRA1.670e-7981.71Uncharacterized protein n=1 Tax=Tribonema minus Ta... [more]
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
Contig_18contigContig_18:918078..918632 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Tribonema minus UTEX_B_31562021-06-17
Properties
Property NameValue
ProteomeIdTrimin1|161862|e_gw1.18.296.1
Hectar predicted targeting categoryother localisation
TranscriptId162184
TrackFilteredModels1
ProteinId161862
Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesTypePosition
jgi.p|Trimin1|161862gene_1390Tribonema minus UTEX_B_3156 geneContig_18 918078..918632 +


The following exon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
exon_1390_1exon_1390_1Tribonema minus UTEX_B_3156 exonContig_18 918078..918632 +


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
CDS_1390CDS_1390Tribonema minus UTEX_B_3156 CDSContig_18 918078..918632 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
jgi.p|Trimin1|161862Trimin1|161862|e_gw1.18.296.1Tribonema minus UTEX_B_3156 polypeptideContig_18 918078..918632 +


Sequences
The following sequences are available for this feature:

spliced messenger RNA

>mRNA_1390 ID=mRNA_1390|Name=jgi.p|Trimin1|161862|organism=Tribonema minus UTEX_B_3156 |type=mRNA|length=555bp|location=Sequence derived from alignment at Contig_18:918078..918632+ (Tribonema minus UTEX_B_3156 )|Notes=Excludes all bases but those of type(s): exon.  
ATGCGGGTTCTTGCATTCGATATCGGGTGTTTAAATTTTGCTGCTTGCCT
TGTAGAGGTTAGCCCGTCCACAAATCCACAAGTGATTGCCTGTTGCAATG
TGGTGCTGGGCGCATCTAAGGAGTGCGTAGCATCTCTAATTGCTGCAATG
CACACACAAATCCGCAACAACCCTTTCATGACTGCTGCTGGGTGTGATGC
TGTGCTAATCGAACAGCAGTGCGGACACGCATCACCGAAAAACTTTGCTC
TGTCAGCTGCACTGTACATGTTTTACCAGCAGAGGCTGGACGCAGGCGCA
ATCGGGTCGCTGCAGTTTGTCAATCCACGAGTAAAGTTTTCGAGGCTGGC
AAAGATGAATTTGCCTGCCCTGGCCAATTACAAGGATCAGCTCGTGCAGT
GCAGAGGCAAGGAGCTGAAGCAACTGAGTGTTAACTGCGCCATCGAGCTA
GCGAGAGCGTGGAACTGCAGCGTGTTTCAAGATGCCATGATGCGGGCCAA
AAAGCAGGATGACCTCAGCGATGCCATGTTGTACGCGGTCACACACGTGA
TCTGA
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protein sequence of jgi.p|Trimin1|161862

>Trimin1|161862|e_gw1.18.296.1 ID=Trimin1|161862|e_gw1.18.296.1|Name=jgi.p|Trimin1|161862|organism=Tribonema minus UTEX_B_3156 |type=polypeptide|length=185bp
MRVLAFDIGCLNFAACLVEVSPSTNPQVIACCNVVLGASKECVASLIAAM
HTQIRNNPFMTAAGCDAVLIEQQCGHASPKNFALSAALYMFYQQRLDAGA
IGSLQFVNPRVKFSRLAKMNLPALANYKDQLVQCRGKELKQLSVNCAIEL
ARAWNCSVFQDAMMRAKKQDDLSDAMLYAVTHVI*
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mRNA from alignment at Contig_18:918078..918632+

Legend: exonpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_1390 ID=mRNA_1390|Name=jgi.p|Trimin1|161862|organism=Tribonema minus UTEX_B_3156 |type=mRNA|length=555bp|location=Sequence derived from alignment at Contig_18:918078..918632+ (Tribonema minus UTEX_B_3156 )
ATGCGGGTTCTTGCATTCGATATCGGGTGTTTAAATTTTGCTGCTTGCCT
TGTAGAGGTTAGCCCGTCCACAAATCCACAAGTGATTGCCTGTTGCAATG
TGGTGCTGGGCGCATCTAAGGAGTGCGTAGCATCTCTAATTGCTGCAATG
CACACACAAATCCGCAACAACCCTTTCATGACTGCTGCTGGGTGTGATGC
TGTGCTAATCGAACAGCAGTGCGGACACGCATCACCGAAAAACTTTGCTC
TGTCAGCTGCACTGTACATGTTTTACCAGCAGAGGCTGGACGCAGGCGCA
ATCGGGTCGCTGCAGTTTGTCAATCCACGAGTAAAGTTTTCGAGGCTGGC
AAAGATGAATTTGCCTGCCCTGGCCAATTACAAGGATCAGCTCGTGCAGT
GCAGAGGCAAGGAGCTGAAGCAACTGAGTGTTAACTGCGCCATCGAGCTA
GCGAGAGCGTGGAACTGCAGCGTGTTTCAAGATGCCATGATGCGGGCCAA
AAAGCAGGATGACCTCAGCGATGCCATGTTGTACGCGGTCACACACGTGA
TCTGA
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Coding sequence (CDS) from alignment at Contig_18:918078..918632+

>mRNA_1390 ID=mRNA_1390|Name=jgi.p|Trimin1|161862|organism=Tribonema minus UTEX_B_3156 |type=CDS|length=555bp|location=Sequence derived from alignment at Contig_18:918078..918632+ (Tribonema minus UTEX_B_3156 )
ATGCGGGTTCTTGCATTCGATATCGGGTGTTTAAATTTTGCTGCTTGCCT
TGTAGAGGTTAGCCCGTCCACAAATCCACAAGTGATTGCCTGTTGCAATG
TGGTGCTGGGCGCATCTAAGGAGTGCGTAGCATCTCTAATTGCTGCAATG
CACACACAAATCCGCAACAACCCTTTCATGACTGCTGCTGGGTGTGATGC
TGTGCTAATCGAACAGCAGTGCGGACACGCATCACCGAAAAACTTTGCTC
TGTCAGCTGCACTGTACATGTTTTACCAGCAGAGGCTGGACGCAGGCGCA
ATCGGGTCGCTGCAGTTTGTCAATCCACGAGTAAAGTTTTCGAGGCTGGC
AAAGATGAATTTGCCTGCCCTGGCCAATTACAAGGATCAGCTCGTGCAGT
GCAGAGGCAAGGAGCTGAAGCAACTGAGTGTTAACTGCGCCATCGAGCTA
GCGAGAGCGTGGAACTGCAGCGTGTTTCAAGATGCCATGATGCGGGCCAA
AAAGCAGGATGACCTCAGCGATGCCATGTTGTACGCGGTCACACACGTGA
TCTGA
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