mRNA_13896 (mRNA) Tribonema minus UTEX_B_3156

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
Namejgi.p|Trimin1|140732
Unique NamemRNA_13896
TypemRNA
OrganismTribonema minus UTEX_B_3156 (Tribonema minus UTEX_B_3156 )
Homology
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BLAST of jgi.p|Trimin1|140732 vs. uniprot
Match: A0A835ZC76_9STRA (Uncharacterized protein (Fragment) n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A835ZC76_9STRA)

HSP 1 Score: 194 bits (492), Expect = 7.310e-63
Identity = 92/92 (100.00%), Postives = 92/92 (100.00%), Query Frame = 1 
Query:    1 GLKLDVQGYNVVLMACSMAESLEIALQLYHQMVHVDRREPNVRTYDCLLRCCCHHKDWRVALRLFAEMRRRGVIPDALVWTKLLETLSKSQQ 276
            GLKLDVQGYNVVLMACSMAESLEIALQLYHQMVHVDRREPNVRTYDCLLRCCCHHKDWRVALRLFAEMRRRGVIPDALVWTKLLETLSKSQQ
Sbjct:    1 GLKLDVQGYNVVLMACSMAESLEIALQLYHQMVHVDRREPNVRTYDCLLRCCCHHKDWRVALRLFAEMRRRGVIPDALVWTKLLETLSKSQQ 92
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BLAST of jgi.p|Trimin1|140732 vs. uniprot
Match: A0A835YS91_9STRA (Uncharacterized protein n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A835YS91_9STRA)

HSP 1 Score: 149 bits (375), Expect = 4.070e-43
Identity = 70/92 (76.09%), Postives = 79/92 (85.87%), Query Frame = 1 
Query:    1 GLKLDVQGYNVVLMACSMAESLEIALQLYHQMVHVDRREPNVRTYDCLLRCCCHHKDWRVALRLFAEMRRRGVIPDALVWTKLLETLSKSQQ 276
            G KLDV+GYNVVL AC+MAESLEI L LYHQMVHVDR EP+VRTY       CH+KDWRVALRLFAEM++RGV+PDALVWTKLLETL+K +Q
Sbjct:  135 GFKLDVKGYNVVLKACTMAESLEITLNLYHQMVHVDRTEPDVRTYXXXXXXXCHYKDWRVALRLFAEMQQRGVVPDALVWTKLLETLAKCRQ 226
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BLAST of jgi.p|Trimin1|140732 vs. uniprot
Match: A0A835YUD4_9STRA (Uncharacterized protein n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A835YUD4_9STRA)

HSP 1 Score: 84.7 bits (208), Expect = 2.460e-17
Identity = 39/49 (79.59%), Postives = 44/49 (89.80%), Query Frame = 1 
Query:    1 GLKLDVQGYNVVLMACSMAESLEIALQLYHQMVHVDRREPNVRTYDCLL 147
            G KLDV+GYN+VL ACSMA+SLEIA++LYHQMVHVD  EPNVRTYD LL
Sbjct:   76 GFKLDVKGYNIVLKACSMADSLEIAVELYHQMVHVDGTEPNVRTYDSLL 124
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BLAST of jgi.p|Trimin1|140732 vs. uniprot
Match: UPI001C4F9B0D (pentatricopeptide repeat-containing protein At5g02830, chloroplastic n=1 Tax=Macadamia integrifolia TaxID=60698 RepID=UPI001C4F9B0D)

HSP 1 Score: 52.4 bits (124), Expect = 8.610e-6
Identity = 25/79 (31.65%), Postives = 49/79 (62.03%), Query Frame = 1 
Query:    1 GLKLDVQGYNVVLMACSMAESLEIALQLYHQMVHVDRR---EPNVRTYDCLLRCCCHHKDWRVALRLFAEMRRRGVIPD 228
            G+  DV  YN++L ACS+AE +++A ++Y ++ H+  +   + +V TY  +++     K W++AL++  +M   GV P+
Sbjct:  382 GVIADVASYNILLKACSLAERVDLAQEIYKEIKHMASKGALKLDVITYSTIVKVFADAKMWQMALKVKEDMLLSGVTPN 460
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BLAST of jgi.p|Trimin1|140732 vs. uniprot
Match: UPI001CC7EAFF (pentatricopeptide repeat-containing protein At5g02830, chloroplastic n=1 Tax=Telopea speciosissima TaxID=54955 RepID=UPI001CC7EAFF)

HSP 1 Score: 50.4 bits (119), Expect = 4.030e-5
Identity = 24/75 (32.00%), Postives = 46/75 (61.33%), Query Frame = 1 
Query:   13 DVQGYNVVLMACSMAESLEIALQLYHQMVHVDRR---EPNVRTYDCLLRCCCHHKDWRVALRLFAEMRRRGVIPD 228
            DV  YN++L ACS+AE +++A  +Y ++ H+  +   + +V TY  +++     K W++AL++  +M   GV P+
Sbjct:  151 DVASYNILLKACSLAERVDLAQDIYKEIKHMASKGALKLDVITYSTIIKVFADAKLWQMALKVKEDMLLSGVTPN 225
The following BLAST results are available for this feature:
BLAST of jgi.p|Trimin1|140732 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 5
Match NameE-valueIdentityDescription
A0A835ZC76_9STRA7.310e-63100.00Uncharacterized protein (Fragment) n=1 Tax=Tribone... [more]
A0A835YS91_9STRA4.070e-4376.09Uncharacterized protein n=1 Tax=Tribonema minus Ta... [more]
A0A835YUD4_9STRA2.460e-1779.59Uncharacterized protein n=1 Tax=Tribonema minus Ta... [more]
UPI001C4F9B0D8.610e-631.65pentatricopeptide repeat-containing protein At5g02... [more]
UPI001CC7EAFF4.030e-532.00pentatricopeptide repeat-containing protein At5g02... [more]
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
Contig_159contigContig_159:348005..348280 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Tribonema minus UTEX_B_31562021-06-17
Properties
Property NameValue
ProteomeIdTrimin1|140732|gw1.159.46.1
Descriptionendonuclease activity
COG categoryS
Max annot lvl2759|Eukaryota
EggNOG OGsKOG4197@1|root,KOG4197@2759|Eukaryota
Evalue1.56e-07
Seed ortholog109760.SPPG_01976T0
Hectar predicted targeting categoryother localisation
TranscriptId141054
TrackFilteredModels1
ProteinId140732
Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesTypePosition
jgi.p|Trimin1|140732gene_13896Tribonema minus UTEX_B_3156 geneContig_159 348005..348280 +


The following exon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
exon_13896_1exon_13896_1Tribonema minus UTEX_B_3156 exonContig_159 348005..348280 +


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
CDS_13896CDS_13896Tribonema minus UTEX_B_3156 CDSContig_159 348005..348280 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
jgi.p|Trimin1|140732Trimin1|140732|gw1.159.46.1Tribonema minus UTEX_B_3156 polypeptideContig_159 348005..348280 +


Sequences
The following sequences are available for this feature:

spliced messenger RNA

>mRNA_13896 ID=mRNA_13896|Name=jgi.p|Trimin1|140732|organism=Tribonema minus UTEX_B_3156 |type=mRNA|length=276bp|location=Sequence derived from alignment at Contig_159:348005..348280+ (Tribonema minus UTEX_B_3156 )|Notes=Excludes all bases but those of type(s): exon.  
GGCCTCAAGCTGGACGTCCAAGGCTACAACGTAGTCCTGATGGCATGCAG
TATGGCGGAGTCATTAGAAATCGCTTTGCAGCTGTACCACCAGATGGTAC
ACGTGGATCGCAGAGAGCCCAACGTGCGGACCTACGATTGTCTCCTGAGG
TGCTGCTGTCACCACAAGGATTGGCGCGTGGCGCTGCGTCTATTTGCCGA
GATGCGGCGGCGAGGCGTCATTCCGGACGCGTTGGTCTGGACGAAGCTGC
TGGAAACCCTTTCAAAAAGCCAACAG
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protein sequence of jgi.p|Trimin1|140732

>Trimin1|140732|gw1.159.46.1 ID=Trimin1|140732|gw1.159.46.1|Name=jgi.p|Trimin1|140732|organism=Tribonema minus UTEX_B_3156 |type=polypeptide|length=92bp
GLKLDVQGYNVVLMACSMAESLEIALQLYHQMVHVDRREPNVRTYDCLLR
CCCHHKDWRVALRLFAEMRRRGVIPDALVWTKLLETLSKSQQ
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mRNA from alignment at Contig_159:348005..348280+

Legend: exonpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_13896 ID=mRNA_13896|Name=jgi.p|Trimin1|140732|organism=Tribonema minus UTEX_B_3156 |type=mRNA|length=276bp|location=Sequence derived from alignment at Contig_159:348005..348280+ (Tribonema minus UTEX_B_3156 )
GGCCTCAAGCTGGACGTCCAAGGCTACAACGTAGTCCTGATGGCATGCAG
TATGGCGGAGTCATTAGAAATCGCTTTGCAGCTGTACCACCAGATGGTAC
ACGTGGATCGCAGAGAGCCCAACGTGCGGACCTACGATTGTCTCCTGAGG
TGCTGCTGTCACCACAAGGATTGGCGCGTGGCGCTGCGTCTATTTGCCGA
GATGCGGCGGCGAGGCGTCATTCCGGACGCGTTGGTCTGGACGAAGCTGC
TGGAAACCCTTTCAAAAAGCCAACAG
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Coding sequence (CDS) from alignment at Contig_159:348005..348280+

>mRNA_13896 ID=mRNA_13896|Name=jgi.p|Trimin1|140732|organism=Tribonema minus UTEX_B_3156 |type=CDS|length=276bp|location=Sequence derived from alignment at Contig_159:348005..348280+ (Tribonema minus UTEX_B_3156 )
GGCCTCAAGCTGGACGTCCAAGGCTACAACGTAGTCCTGATGGCATGCAG
TATGGCGGAGTCATTAGAAATCGCTTTGCAGCTGTACCACCAGATGGTAC
ACGTGGATCGCAGAGAGCCCAACGTGCGGACCTACGATTGTCTCCTGAGG
TGCTGCTGTCACCACAAGGATTGGCGCGTGGCGCTGCGTCTATTTGCCGA
GATGCGGCGGCGAGGCGTCATTCCGGACGCGTTGGTCTGGACGAAGCTGC
TGGAAACCCTTTCAAAAAGCCAACAG
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