mRNA_13889 (mRNA) Tribonema minus UTEX_B_3156

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
Namejgi.p|Trimin1|177782
Unique NamemRNA_13889
TypemRNA
OrganismTribonema minus UTEX_B_3156 (Tribonema minus UTEX_B_3156 )
Homology
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BLAST of jgi.p|Trimin1|177782 vs. uniprot
Match: A0A835Z910_9STRA (Ankyrin repeat-containing domain protein (Fragment) n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A835Z910_9STRA)

HSP 1 Score: 134 bits (336), Expect = 7.980e-37
Identity = 168/168 (100.00%), Postives = 168/168 (100.00%), Query Frame = 1 
Query:    1 MPGTDFSLHKAASRGDVGCLKRYAEEGKDLGACDSYNRTPMXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXLLLERKPQLLHARDHRXXXXXXXXXXXXXXXXXXXXLQAGAKTTVRDMHLRTXXXXXXXXXXXXXXXXXXXXXXDLDVLDE 504
            MPGTDFSLHKAASRGDVGCLKRYAEEGKDLGACDSYNRTPMXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXLLLERKPQLLHARDHRXXXXXXXXXXXXXXXXXXXXLQAGAKTTVRDMHLRTXXXXXXXXXXXXXXXXXXXXXXDLDVLDE
Sbjct:    1 MPGTDFSLHKAASRGDVGCLKRYAEEGKDLGACDSYNRTPMXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXLLLERKPQLLHARDHRXXXXXXXXXXXXXXXXXXXXLQAGAKTTVRDMHLRTXXXXXXXXXXXXXXXXXXXXXXDLDVLDE 168
The following BLAST results are available for this feature:
BLAST of jgi.p|Trimin1|177782 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 1
Match NameE-valueIdentityDescription
A0A835Z910_9STRA7.980e-37100.00Ankyrin repeat-containing domain protein (Fragment... [more]
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
Contig_159contigContig_159:283913..284416 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Tribonema minus UTEX_B_31562021-06-17
Properties
Property NameValue
ProteomeIdTrimin1|177782|e_gw1.159.68.1
Hectar predicted targeting categoryother localisation
TranscriptId178104
TrackFilteredModels1
ProteinId177782
Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesTypePosition
jgi.p|Trimin1|177782gene_13889Tribonema minus UTEX_B_3156 geneContig_159 283913..284416 +


The following exon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
exon_13889_1exon_13889_1Tribonema minus UTEX_B_3156 exonContig_159 283913..284416 +


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
CDS_13889CDS_13889Tribonema minus UTEX_B_3156 CDSContig_159 283913..284416 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
jgi.p|Trimin1|177782Trimin1|177782|e_gw1.159.68.1Tribonema minus UTEX_B_3156 polypeptideContig_159 283913..284416 +


Sequences
The following sequences are available for this feature:

spliced messenger RNA

>mRNA_13889 ID=mRNA_13889|Name=jgi.p|Trimin1|177782|organism=Tribonema minus UTEX_B_3156 |type=mRNA|length=504bp|location=Sequence derived from alignment at Contig_159:283913..284416+ (Tribonema minus UTEX_B_3156 )|Notes=Excludes all bases but those of type(s): exon.  
ATGCCTGGGACTGATTTCTCTCTGCACAAGGCTGCTTCTCGCGGAGACGT
GGGCTGCCTCAAGCGCTATGCCGAGGAGGGCAAGGACCTTGGCGCCTGCG
ACAGCTACAACAGGACCCCCATGCACAGCGCCTGCGCAGGGGGGCGTGTG
AGCGTCGTGGAGTTCCTGATCGCCAAGGGCGCCGCAGTGGATCCCGAAGA
TCGCAGCAGCAGGACCCCGCTTCACGATGCCTGCGAGAGCGGTGTGGTGG
AGGTGGTGGCCCTGCTGCTGGAGCGCAAGCCGCAGCTGCTGCACGCACGC
GACCACAGATCCTGGGTCCCGCTGCACGTCGCTTGCTGGCGGGGCCACCT
GGCCATAGTTCAATTTCTGTTGCAGGCCGGCGCGAAAACGACAGTTAGGG
ACATGCATCTGCGAACTCCCCTACACCTGTGCTGCCTGGGCGGGCACGTC
GACACCGTGGAGTGCATGGTGAAGGCTGGCGCAGACTTGGACGTTCTAGA
CGAG
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protein sequence of jgi.p|Trimin1|177782

>Trimin1|177782|e_gw1.159.68.1 ID=Trimin1|177782|e_gw1.159.68.1|Name=jgi.p|Trimin1|177782|organism=Tribonema minus UTEX_B_3156 |type=polypeptide|length=168bp
MPGTDFSLHKAASRGDVGCLKRYAEEGKDLGACDSYNRTPMHSACAGGRV
SVVEFLIAKGAAVDPEDRSSRTPLHDACESGVVEVVALLLERKPQLLHAR
DHRSWVPLHVACWRGHLAIVQFLLQAGAKTTVRDMHLRTPLHLCCLGGHV
DTVECMVKAGADLDVLDE
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mRNA from alignment at Contig_159:283913..284416+

Legend: exonpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_13889 ID=mRNA_13889|Name=jgi.p|Trimin1|177782|organism=Tribonema minus UTEX_B_3156 |type=mRNA|length=504bp|location=Sequence derived from alignment at Contig_159:283913..284416+ (Tribonema minus UTEX_B_3156 )
ATGCCTGGGACTGATTTCTCTCTGCACAAGGCTGCTTCTCGCGGAGACGT
GGGCTGCCTCAAGCGCTATGCCGAGGAGGGCAAGGACCTTGGCGCCTGCG
ACAGCTACAACAGGACCCCCATGCACAGCGCCTGCGCAGGGGGGCGTGTG
AGCGTCGTGGAGTTCCTGATCGCCAAGGGCGCCGCAGTGGATCCCGAAGA
TCGCAGCAGCAGGACCCCGCTTCACGATGCCTGCGAGAGCGGTGTGGTGG
AGGTGGTGGCCCTGCTGCTGGAGCGCAAGCCGCAGCTGCTGCACGCACGC
GACCACAGATCCTGGGTCCCGCTGCACGTCGCTTGCTGGCGGGGCCACCT
GGCCATAGTTCAATTTCTGTTGCAGGCCGGCGCGAAAACGACAGTTAGGG
ACATGCATCTGCGAACTCCCCTACACCTGTGCTGCCTGGGCGGGCACGTC
GACACCGTGGAGTGCATGGTGAAGGCTGGCGCAGACTTGGACGTTCTAGA
CGAG
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Coding sequence (CDS) from alignment at Contig_159:283913..284416+

>mRNA_13889 ID=mRNA_13889|Name=jgi.p|Trimin1|177782|organism=Tribonema minus UTEX_B_3156 |type=CDS|length=504bp|location=Sequence derived from alignment at Contig_159:283913..284416+ (Tribonema minus UTEX_B_3156 )
ATGCCTGGGACTGATTTCTCTCTGCACAAGGCTGCTTCTCGCGGAGACGT
GGGCTGCCTCAAGCGCTATGCCGAGGAGGGCAAGGACCTTGGCGCCTGCG
ACAGCTACAACAGGACCCCCATGCACAGCGCCTGCGCAGGGGGGCGTGTG
AGCGTCGTGGAGTTCCTGATCGCCAAGGGCGCCGCAGTGGATCCCGAAGA
TCGCAGCAGCAGGACCCCGCTTCACGATGCCTGCGAGAGCGGTGTGGTGG
AGGTGGTGGCCCTGCTGCTGGAGCGCAAGCCGCAGCTGCTGCACGCACGC
GACCACAGATCCTGGGTCCCGCTGCACGTCGCTTGCTGGCGGGGCCACCT
GGCCATAGTTCAATTTCTGTTGCAGGCCGGCGCGAAAACGACAGTTAGGG
ACATGCATCTGCGAACTCCCCTACACCTGTGCTGCCTGGGCGGGCACGTC
GACACCGTGGAGTGCATGGTGAAGGCTGGCGCAGACTTGGACGTTCTAGA
CGAG
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