mRNA_13887 (mRNA) Tribonema minus UTEX_B_3156

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
Namejgi.p|Trimin1|177784
Unique NamemRNA_13887
TypemRNA
OrganismTribonema minus UTEX_B_3156 (Tribonema minus UTEX_B_3156 )
Homology
BLAST of jgi.p|Trimin1|177784 vs. uniprot
Match: A0A836CMD3_9STRA (Uncharacterized protein n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A836CMD3_9STRA)

HSP 1 Score: 596 bits (1536), Expect = 7.690e-215
Identity = 310/310 (100.00%), Postives = 310/310 (100.00%), Query Frame = 1
Query:    1 MSLLGSAGRAEGMSALFRAVEKRFGNLESLREPASVGVITADELRREDLEALFEHRAAAVHVKGFYPAAAAAALAARLELMETTNWEISSGRGLESSDVTSISVPFNVALGKGPEAVEAYFAAARALQRRLRAPPAPGAPPLLPPIDQLRLELDELWPHGARAARDARGRAFLPGLPRIMRGPTRSLAGFVHVDDLAPLRAARGLFSANAYLRMPPAGGALAVYPLAVRTRWDFYRHAATLSGLMGQGAAAQDALRRALPPPLRVRPAPGDLVLLCAQRPHAAEGFPVGTRVSMQSFVTHERGQALTLDT 930
            MSLLGSAGRAEGMSALFRAVEKRFGNLESLREPASVGVITADELRREDLEALFEHRAAAVHVKGFYPAAAAAALAARLELMETTNWEISSGRGLESSDVTSISVPFNVALGKGPEAVEAYFAAARALQRRLRAPPAPGAPPLLPPIDQLRLELDELWPHGARAARDARGRAFLPGLPRIMRGPTRSLAGFVHVDDLAPLRAARGLFSANAYLRMPPAGGALAVYPLAVRTRWDFYRHAATLSGLMGQGAAAQDALRRALPPPLRVRPAPGDLVLLCAQRPHAAEGFPVGTRVSMQSFVTHERGQALTLDT
Sbjct:    1 MSLLGSAGRAEGMSALFRAVEKRFGNLESLREPASVGVITADELRREDLEALFEHRAAAVHVKGFYPAAAAAALAARLELMETTNWEISSGRGLESSDVTSISVPFNVALGKGPEAVEAYFAAARALQRRLRAPPAPGAPPLLPPIDQLRLELDELWPHGARAARDARGRAFLPGLPRIMRGPTRSLAGFVHVDDLAPLRAARGLFSANAYLRMPPAGGALAVYPLAVRTRWDFYRHAATLSGLMGQGAAAQDALRRALPPPLRVRPAPGDLVLLCAQRPHAAEGFPVGTRVSMQSFVTHERGQALTLDT 310          
BLAST of jgi.p|Trimin1|177784 vs. uniprot
Match: W7TSJ1_9STRA (Uncharacterized protein n=2 Tax=Monodopsidaceae TaxID=425072 RepID=W7TSJ1_9STRA)

HSP 1 Score: 234 bits (598), Expect = 3.030e-72
Identity = 142/292 (48.63%), Postives = 188/292 (64.38%), Query Frame = 1
Query:  112 VITADELRREDLEALFEHRAAAVHVKGFYPAAAAAALAARL--ELMETTNWEISSG-RGLESSDVTSI-SVPFN-VALGKGPEAVEAYFAAARALQRRLRAP--------PAPGAP-----PLLPPIDQLRLELDELWPHGARAARDAR-GRAFLPGLPRIMRGPTRSLAGFVHVDDLAPLRAARGLFSANAYLRMPPAGGA-LAVYPLAVRTRWDFYRHAATLSGLMGQGAAAQDALRRALPPPLRVRPAPGDLVLLCAQRPHAAEGFPVGTRVSMQSFVTHERGQALTLD 927
            +ITA  L+RE LE L  HR   VH++GFYP  AA  +A RL  +      W IS+  +GLESSDV +I S P+N VA  +  +A +AYF  A A  R LR             GA      P+L P+D+LRLELDE++P GA   +  + GR F+ GL R+M+GPTR L GF+H DD+ PL    GLFSAN YL++P  GG  L +Y L VR+R++FY++A+TL+ L   G A QD LR  LP P  ++P  GDL+L+CAQRPHA  GFP+GTRVS+QSF++H++G+ L LD
Sbjct:   26 IITATNLKREHLEELLAHRTCCVHIQGFYPPEAAKGIAQRLTRDPSRQLEWLISNPQKGLESSDVRTIGSQPYNMVASLRDKKAEKAYFDGALACMRELREGISSRDAGLAGEGAEHASTLPVLGPLDKLRLELDEIFPQGATVTKHPKDGRPFVAGLARVMQGPTRHLEGFIHCDDIHPLSPDEGLFSANLYLQLPGTGGGELLIYDLEVRSRFEFYQNASTLALLTTAGEAGQDILRARLPKPKMIKPVAGDLILICAQRPHAVAGFPLGTRVSIQSFISHKKGKPLQLD 317          
BLAST of jgi.p|Trimin1|177784 vs. uniprot
Match: D7FWH0_ECTSI (Uncharacterized protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7FWH0_ECTSI)

HSP 1 Score: 228 bits (582), Expect = 1.250e-71
Identity = 110/169 (65.09%), Postives = 136/169 (80.47%), Query Frame = 1
Query:  421 PLLPPIDQLRLELDELWPHGARAARDARGRAFLPGLPRIMRGPTRSLAGFVHVDDLAPLRAARGLFSANAYLRMPPAGGALAVYPLAVRTRWDFYRHAATLSGLMGQGAAAQDALRRALPPPLRVRPAPGDLVLLCAQRPHAAEGFPVGTRVSMQSFVTHERGQALTLD 927
            PLL P+D+LRLELDE+WP GA   ++  G+AFL G+ R+MRGPTR + GF+HVD+LAP+  +RG FSAN YL++PP GG LAV+PLAVR+RWDF+RHA TLS L  QG   Q  LRR LPPP  ++ APGDLVLLC QRPHAA+GFP+GTRVS+QSF+T E+G+AL LD
Sbjct:   19 PLLGPLDKLRLELDEVWPEGASVRKNEAGKAFLAGVARVMRGPTRYVEGFMHVDELAPMVESRGTFSANVYLKVPPTGGELAVWPLAVRSRWDFFRHAETLSHLTVQGEEGQALLRRKLPPPRVIKVAPGDLVLLCVQRPHAAQGFPMGTRVSVQSFLTFEKGKALLLD 187          
BLAST of jgi.p|Trimin1|177784 vs. uniprot
Match: A0A7S2ENC7_TRICV (Hypothetical protein n=1 Tax=Trieres chinensis TaxID=1514140 RepID=A0A7S2ENC7_TRICV)

HSP 1 Score: 229 bits (583), Expect = 9.610e-70
Identity = 154/325 (47.38%), Postives = 192/325 (59.08%), Query Frame = 1
Query:    7 LLGSAGRAEGMSA---LFRAVEKRFGNLESLREPASVG-VITADE--LRREDLEALFEHRAAAVHVKGFYPAAAAA----ALAARLELMETTNWEISSGRGLESSDVTSISV--PFNVALGKG-PEAVEAYFAAARALQRRLRAPPAPGA--------PPLLPPIDQLRLELDELWPHGARAARDARG--RAFLPGLPRIMRGPTRSLAGFVHVDDLAPLRAARGLFSANAYLRMPPAG----GALAVYPLAVRTRWDFYRHAATLSGLMGQGAAAQDALRRALPPPLRVRPAPGDLVLLCAQRPHAAEGFPVGTRVSMQSFVTH 900
            ++G AG      A   LF  +E+RFG + +L +  S   VI  D+  L   DL  L +H A A+HVK FY  AAAA    ALAA        NW++S+ RGLESSDV ++    P+NVA   G PE +++YF   +      RA    GA         P L P+D+LRLELDE WP GA  AR+  G  R F  GLPR+M GPTR   GF+HVD+LAPL   RGLFSAN YL++P +     G L ++PL VR+RWD+Y++A  LSGL  Q A  Q  LR  L  P  V+  PGDLVLLC QRPHAA GF  GTRVS+Q FV +
Sbjct:    2 VMGGAGSQRASLAARRLFALIEERFGGISALIDKGSKAEVIRRDDGVLCSSDLLRLSKHDATALHVKNFYDPAAAAEIGRALAAEARAGLGRNWKVSTSRGLESSDVATLGAHPPYNVACSSGRPEDIDSYFEGVQKEFSHRRATQIKGAVGENNFITQPRLWPMDKLRLELDEAWPGGAGLARETEGSKRPFGGGLPRVMAGPTRWQRGFIHVDELAPLSEVRGLFSANIYLQLPCSSESDEGDLHIWPLGVRSRWDWYKNAILLSGLTSQDAEMQVRLRSDLGTPKVVKVEPGDLVLLCVQRPHAAVGFRNGTRVSLQCFVQY 326          
BLAST of jgi.p|Trimin1|177784 vs. uniprot
Match: A0A1Z5K7S1_FISSO (Uncharacterized protein n=2 Tax=Fistulifera solaris TaxID=1519565 RepID=A0A1Z5K7S1_FISSO)

HSP 1 Score: 226 bits (575), Expect = 1.670e-68
Identity = 148/330 (44.85%), Postives = 197/330 (59.70%), Query Frame = 1
Query:    7 LLGSAGRAEGMSALFRAVEKRFGNLESLREPASVGVITADE-LRREDLEALFEHRAAAVHVKGFYPAAAAAALAARL-ELMETTNWEISSGRGLESSDVTSIS--VPFNV--ALGKGP--EAVEAYF-AAARALQRRLRAPPAPGAPPLLPPIDQLRLELDELWPHGARAARDARG--RAFLPGLPRIMRGPTRSLAGFVHVDDLAPLRAARGLFSANAYLRMPPAGGA----------LAVYPLAVRTRWDFYRHAATLSGLMGQGAAAQDALRRALPPPLRVRPAPGDLVLLCAQRPHAAEGFPVGTRVSMQSFVTHER-GQALTLDT 930
            L  SA + + +  LF+ +EKR+G L   + PA+  +IT D+ L+  DL+ L +H+A A+HVKGFY   AA  L   L       NW++S+ RGLESSDV+++    P+NV  A  KG   +A + YF    + LQRR       G    L P+D LRL LDE WP GA  AR+++G  R +  GLPRIM+GPTR   GF+HVD++  L   +GLFSAN YL+MP               L ++P+A+R+RWD+YR+A  LSGL  Q    Q  LR  L  PL +  APGDL+L+CAQRPHAA GF  G RVS+Q FV H    Q L +D+
Sbjct:   12 LASSAEKTQALRTLFQWIEKRYGGLPFDKGPAAE-IITCDKVLQTSDLKRLMQHQATAIHVKGFYDLQAAVELGKELAHEAGVRNWKVSTSRGLESSDVSTLGEHAPYNVVAASPKGIRLQAEDEYFDGVQKELQRRRTVATEHGVRHRLWPLDLLRLSLDEAWPAGAGLARESKGKKRPYSGGLPRIMKGPTRWRKGFIHVDEMGILNPQKGLFSANIYLQMPDDSRENADALTPQKILDIWPVAIRSRWDWYRNALLLSGLSSQDTEDQMRLRFCLGDPLSIAVAPGDLILICAQRPHAAVGFQSGVRVSLQCFVQHNGLDQRLLIDS 340          
BLAST of jgi.p|Trimin1|177784 vs. uniprot
Match: B7G282_PHATC (Predicted protein n=2 Tax=Phaeodactylum tricornutum TaxID=2850 RepID=B7G282_PHATC)

HSP 1 Score: 222 bits (566), Expect = 2.280e-67
Identity = 139/308 (45.13%), Postives = 185/308 (60.06%), Query Frame = 1
Query:   16 SAGRAEGMSALFRAVEKRFGNLESLREPASVGVITADELRREDLEALFEHRAAAVHVKGFYPAAAA----AALAARLELMETTNWEISSGRGLESSDVTSIS--VPFNVALGKGPEA-VEAYFAAA-RALQRRLRAPPAPGAPPLLPPIDQLRLELDELWPHGARAARDARG--RAFLPGLPRIMRGPTRSLAGFVHVDDLAPLRAARGLFSANAYLRMPP-----AGGALAVYPLAVRTRWDFYRHAATLSGLMGQGAAAQDALRRALPPPLRVRPAPGDLVLLCAQRPHAAEGFPVGTRVSMQSFV 894
            SA     +  LF  +E R+G L  +       VIT+D+L   DL  L +H A A+H+KGFY   AA    ++LAA     +  NW +S+ RGLESSDV ++    PFN+A  +G  +  + YF    R L +R R   +      L P+D LRLELDE WP GA  AR+  G  R F  GLPR+M+GPTR   GF+HVD++ PL +++GLFSAN YL++P      A   L ++P+ +R+RWD+YR+A  L+GL  Q A AQ  LR+ L PP  +   PGDLVLLC QRPH A GF  GTRVS+Q F+
Sbjct:    7 SAESTAAIRRLFAFIESRYGGLP-MDSGLMADVITSDKLCERDLVRLVKHEATALHIKGFYHTEAAKKLGSSLAAEASHGKGKNWRVSTSRGLESSDVFTLGEHAPFNIASARGNSSDQDEYFTGVLRELHQRRR---SRDDGMQLWPLDLLRLELDEAWPAGAGLARETSGEKRPFSGGLPRVMKGPTRWSKGFIHVDEMGPLDSSKGLFSANIYLQLPSDEVTEAQRVLDIWPMGIRSRWDWYRNALLLTGLSSQDAEAQMRLRKQLGPPASITVEPGDLVLLCVQRPHCAVGFQTGTRVSLQCFL 310          
BLAST of jgi.p|Trimin1|177784 vs. uniprot
Match: A0A7S2WJU7_9STRA (Hypothetical protein n=1 Tax=Eucampia antarctica TaxID=49252 RepID=A0A7S2WJU7_9STRA)

HSP 1 Score: 219 bits (558), Expect = 5.930e-66
Identity = 142/320 (44.38%), Postives = 187/320 (58.44%), Query Frame = 1
Query:   16 SAGRAEGMSALFRAVEKRFGNLESLREPASVG--VITADELRREDLEALFEHRAAAVHVKGFYPAAAAAALAARL--ELMETT-NWEISSGRGLESSDVTSIS--VPFNVALGKGP-EAVEAYFAAARA-LQRR----LRAPPAPGAP--PLLPPIDQLRLELDELWPHGARAARDARG--RAFLPGLPRIMRGPTRSLAGFVHVDDLAPLRAARGLFSANAYLRMPPAG--------GALAVYPLAVRTRWDFYRHAATLSGLMGQGAAAQDALRRALPPPLRVRPAPGDLVLLCAQRPHAAEGFPVGTRVSMQSFVTH 900
            S+ R      LF  +E R+G L SL +  S    +++   +   DL+ L  H A A+HVK FY    A+ L  +L  E   T  NW +S+ RGLESSDV+++   VPFNVA   G  E ++AYF   +  LQ R    +   P+  +   P L P+D+ RLELDE W  GA  AR++ G  R F  GLPRIM GPTR   G++HVD++APL    GLFSAN YL++P           G L ++PL +R+RWD+Y++A  LSGL  Q   +Q  LR+ L  P  +R  PGDLVLLC QRPHAA GF  GTRVS+Q F+ H
Sbjct:   10 SSRRTAAAQQLFTLIESRYGGLASLMDTGSRAEVIVSQSTIHSSDLQRLMTHNATAIHVKRFYDPETASELGCQLSKEAKNTAQNWRVSTPRGLESSDVSTLGEHVPFNVACSSGKKEDIDAYFEGVQMELQNRRHKIITTDPSSSSRRIPQLWPLDKFRLELDEAWHGGAGLARESGGDKRPFSAGLPRIMFGPTRWNRGYIHVDEMAPLSENEGLFSANIYLQLPEHSSSSENFNDGDLIIWPLGIRSRWDWYKNAILLSGLSTQDPESQVRLRKELGEPQIIRLEPGDLVLLCVQRPHAAIGFDKGTRVSLQGFIQH 329          
BLAST of jgi.p|Trimin1|177784 vs. uniprot
Match: A0A7S2LGR9_9STRA (Hypothetical protein n=1 Tax=Skeletonema marinoi TaxID=267567 RepID=A0A7S2LGR9_9STRA)

HSP 1 Score: 220 bits (560), Expect = 6.040e-66
Identity = 147/340 (43.24%), Postives = 196/340 (57.65%), Query Frame = 1
Query:   25 RAEGMSALFRAVEKRFGNLESLREPASVG-VITADE--LRREDLEALFEHRAAAVHVKGFYPAAAAAALAARLELMETT-----NWEISSGRGLESSDVTSISV--PFNVALGKGPEAVEA----------------YFAAARALQRRLRAPPAPGAPPLLPPIDQLRLELDELWPHGARAARDARG--RAFLPGLPRIMRGPTRSLAGFVHVDDLAPLRAARGLFSANAYLRMP-----------PAGGALAVYPLAVRTRWDFYRHAATLSGLMGQGAAAQDALRRALPPPLRVRPAPGDLVLLCAQRPHAAEGFPVGTRVSMQSFVTHERGQALTLD 927
            R + +  LFR +E  +GNL SL +  +    I AD+  +    L+ LFEH A A+HV+ FY   +A  L   L + E+      NW++S+ RGLESSDV ++    P+NVA+ +  +++ +                YF     +QR   +    G    L P+D+LRLELDE W  GA  AR+ +   RAF  GLPRIMRGPTR   GF+HVDDL PL ++RGLFSAN YL +P           P  GAL ++PL VR+R D+YR+A TLS L  Q   +Q  LR+AL  P  + P PGDLVLLCAQRPH A GF  G RVS+QSF+ +E  + L +D
Sbjct:   30 RNDAIQELFRHLESNYGNLSSLIDRGTAAETIVADDGIIHANHLKRLFEHDATALHVRNFYNTESATQLGEEL-IQESLRKGGKNWKVSTSRGLESSDVGTLGEHPPYNVAVARERQSISSSQNDGDSKDATTPIDEYF---EGVQREFHSRRKKGTSYRLWPLDKLRLELDEAWQFGAGLAREQKDQRRAFGGGLPRIMRGPTR-WKGFIHVDDLGPLDSSRGLFSANIYLTVPDADANKHTNTNPDAGALYIWPLGVRSRLDWYRNAITLSSLSAQDPESQLILRKALGTPNVIHPKPGDLVLLCAQRPHCAVGFSDGVRVSLQSFLQYESEERLLID 364          
BLAST of jgi.p|Trimin1|177784 vs. uniprot
Match: A0A2R5GMH1_9STRA (Fe2OG dioxygenase domain-containing protein n=1 Tax=Hondaea fermentalgiana TaxID=2315210 RepID=A0A2R5GMH1_9STRA)

HSP 1 Score: 218 bits (556), Expect = 6.420e-66
Identity = 142/315 (45.08%), Postives = 183/315 (58.10%), Query Frame = 1
Query:   16 SAGRAEGMSALFRAVEKRFGNLESLREPASVGVITAD-ELRREDLEALFEHRAAAVHVKGFYPAAAAAALAARLELMETT-NWEISSG-RGLESSDVTSISVPFNVALGKGPEAVEAYFAAARALQRRLRAPPAPGAPPLLPPIDQLRLELDELWPHGARAARDARG--RAFLPGLPRIMR-----GPTRSLAGFVHVDDLAPLRAARGLFSANAYLRMPPAGGALAVYPLAVRTRWDFYRHAATLSGLMGQGAAAQDALRRALPPPLRVRPAPGDLVLLCAQRPHAAEGFPVG-TRVSMQSFVTHERGQALTLD 927
            S  R   ++   R +E RFG++ESLR          D ELRRED+E L  H   AVHVKGFYP   A  +A  +   E   NW ++SG R  E SDV ++  P NVA+    + +EAYF  +    R+ R     G    + P+D+ RLELDE+W  G   +R+  G  + F  G+PRIMR      P R   GF HVD+LA +   RGLFSAN YLR  P+GG L ++P+   +RWDFYR+A TLS  + Q A AQ ALR  LP P+ V+  PGDLVL+C QRPH   G  VG  RVS+Q F+ +ERGQ L L+
Sbjct:    7 SGARGAAVANALRLLEARFGDVESLRHVGDEITTREDGELRREDVERLLAHDTLAVHVKGFYPEKQALEVADMMLADEDVRNWSVASGGREAEPSDVDAVGTPHNVAVAN--DELEAYFGNSVEAMRKWRYHREDGVL-AMGPMDKFRLELDEIWTEGCLLSREKGGDRQPFQAGVPRIMRPASRYDPARWTRGFAHVDELAIMSPDRGLFSANIYLRNAPSGGELQIWPVTFASRWDFYRNAPTLSLALLQDAQAQAALRERLPDPVTVKVRPGDLVLICTQRPHGVRGPVVGGPRVSIQGFLQYERGQPLRLE 318          
BLAST of jgi.p|Trimin1|177784 vs. uniprot
Match: A0A7S0BX36_9STRA (Hypothetical protein n=1 Tax=Proboscia inermis TaxID=420281 RepID=A0A7S0BX36_9STRA)

HSP 1 Score: 214 bits (546), Expect = 3.140e-64
Identity = 144/328 (43.90%), Postives = 187/328 (57.01%), Query Frame = 1
Query:   46 LFRAVEKRFGNLESLREPASVG-VITADE--LRREDLEALFEHRAAAVHVKGFYPAAAAAALAARLELM----ETTNWEISSGRGLESSDVTSIS--VPFNVALGKGPEA-VEAYFAAARA-LQRRL------RAPPAPGAPPLLPPIDQLRLELDELWPHGARAARDARG--RAFLPGLPRIMRGPTRSLAGFVHVDDLAPLRAARGLFSANAYLRMPPA-------------GGALAVYPLAVRTRWDFYRHAATLSGLMGQGAAAQDALRRALPPPLRVRPAPGDLVLLCAQRPHAAEGFPVGTRVSMQSFVTHER-GQALTLDT 930
            LF  +E RFG L  L E      +I  D+  +R+ D+  L  H A A+HVK FY +  AA +  RL       +T NW++S+ RGLESSDV ++   VP+NVA   G +  ++ YF+  R+ L  R       R       P  L P+D+LRLELDE WP+GA  AR+  G  R F  GLPR++ GPTR   GFVHVD+L  L    GLFSAN YL++P               GG L ++PL++R+RWD+YR+A  LSGL  Q    Q  LR+ L PP  +   PGDLVLLC QRPHAA GF  G RVS+Q F+ H    Q L +D+
Sbjct:    7 LFAQLESRFGGLSELLETGQRSEIIQRDDGVIRQGDVIRLMSHEATAIHVKNFYQSKYAADIGRRLSADALAGKTHNWKVSTSRGLESSDVCTMGKHVPYNVACASGEKKDIDNYFSGVRSELHSRRGNNGGKRGKDECDEPLQLWPLDKLRLELDEAWPYGAGLAREVGGERRPFGGGLPRVIMGPTRWRRGFVHVDELGVLNEKCGLFSANIYLQLPQRNAHSSTPQDKSQKGGDLEIWPLSIRSRWDWYRNALLLSGLTMQDPEMQVRLRKCLGPPCIINVDPGDLVLLCVQRPHAAVGFQEGCRVSLQCFIQHNSPDQRLVIDS 334          
The following BLAST results are available for this feature:
BLAST of jgi.p|Trimin1|177784 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
A0A836CMD3_9STRA7.690e-215100.00Uncharacterized protein n=1 Tax=Tribonema minus Ta... [more]
W7TSJ1_9STRA3.030e-7248.63Uncharacterized protein n=2 Tax=Monodopsidaceae Ta... [more]
D7FWH0_ECTSI1.250e-7165.09Uncharacterized protein n=1 Tax=Ectocarpus silicul... [more]
A0A7S2ENC7_TRICV9.610e-7047.38Hypothetical protein n=1 Tax=Trieres chinensis Tax... [more]
A0A1Z5K7S1_FISSO1.670e-6844.85Uncharacterized protein n=2 Tax=Fistulifera solari... [more]
B7G282_PHATC2.280e-6745.13Predicted protein n=2 Tax=Phaeodactylum tricornutu... [more]
A0A7S2WJU7_9STRA5.930e-6644.38Hypothetical protein n=1 Tax=Eucampia antarctica T... [more]
A0A7S2LGR9_9STRA6.040e-6643.24Hypothetical protein n=1 Tax=Skeletonema marinoi T... [more]
A0A2R5GMH1_9STRA6.420e-6645.08Fe2OG dioxygenase domain-containing protein n=1 Ta... [more]
A0A7S0BX36_9STRA3.140e-6443.90Hypothetical protein n=1 Tax=Proboscia inermis Tax... [more]

Pages

back to top
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
Contig_159contigContig_159:279824..281942 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Tribonema minus UTEX_B_31562021-06-17
Properties
Property NameValue
ProteomeIdTrimin1|177784|e_gw1.159.75.1
Max annot lvl2759|Eukaryota
EggNOG OGs29QIV@1|root,2S32Z@2759|Eukaryota
Evalue2.05e-72
Seed ortholog2880.D7FWH0
Hectar predicted targeting categoryother localisation
TranscriptId178106
TrackFilteredModels1
ProteinId177784
Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesTypePosition
jgi.p|Trimin1|177784gene_13887Tribonema minus UTEX_B_3156 geneContig_159 279824..281942 +


The following exon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
exon_13887_1exon_13887_1Tribonema minus UTEX_B_3156 exonContig_159 279824..280178 +
exon_13887_2exon_13887_2Tribonema minus UTEX_B_3156 exonContig_159 280822..281201 +
exon_13887_3exon_13887_3Tribonema minus UTEX_B_3156 exonContig_159 281745..281942 +


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
CDS_13887CDS_13887Tribonema minus UTEX_B_3156 CDSContig_159 279824..280178 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
jgi.p|Trimin1|177784Trimin1|177784|e_gw1.159.75.1Tribonema minus UTEX_B_3156 polypeptideContig_159 279824..281942 +


Sequences
The following sequences are available for this feature:

spliced messenger RNA

>mRNA_13887 ID=mRNA_13887|Name=jgi.p|Trimin1|177784|organism=Tribonema minus UTEX_B_3156 |type=mRNA|length=933bp|location=Sequence derived from alignment at Contig_159:279824..281942+ (Tribonema minus UTEX_B_3156 )|Notes=Excludes all bases but those of type(s): exon.  
ATGTCACTGCTGGGTAGCGCAGGCAGGGCGGAGGGGATGTCTGCGCTATT
TCGAGCTGTAGAAAAACGCTTCGGCAACCTGGAATCCTTGCGCGAGCCTG
CGAGCGTGGGCGTGATTACAGCAGATGAGCTGCGAAGAGAAGATCTTGAG
GCGCTCTTCGAACACAGAGCAGCAGCTGTGCATGTCAAAGGCTTCTACCC
CGCTGCAGCTGCTGCAGCACTAGCTGCAAGGCTAGAATTAATGGAGACGA
CGAATTGGGAAATCAGCAGTGGCCGGGGACTGGAGAGCTCAGATGTGACG
AGCATCAGCGTGCCTTTCAATGTCGCTCTCGGGAAGGGACCAGAGGCTGT
AGAAGCGTACTTCGCGGCGGCACGCGCGCTGCAGCGCCGCCTGCGCGCCC
CGCCCGCCCCCGGCGCGCCCCCCCTCCTGCCCCCCATCGACCAGCTGCGC
CTCGAGCTGGACGAGCTCTGGCCGCACGGCGCGCGCGCCGCGCGCGACGC
GCGCGGCCGCGCCTTCCTCCCCGGCCTGCCGCGCATCATGCGCGGCCCGA
CGCGCTCGCTCGCGGGGTTCGTCCACGTTGACGACCTCGCGCCGCTGCGC
GCGGCGCGCGGCCTCTTCAGCGCGAACGCGTACCTGCGCATGCCGCCGGC
GGGCGGCGCGCTCGCGGTGTACCCGCTCGCCGTGCGCACGCGCTGGGACT
TCTACCGCCACGCCGCGACGCTGTCGGGGCTCATGGGCCAGGGCGCGGCG
GCGCAGGACGCGCTGCGCCGCGCGCTGCCGCCGCCGCTGCGCGTGCGCCC
CGCGCCGGGCGACCTCGTGCTGCTGTGCGCGCAGCGCCCGCACGCCGCGG
AGGGCTTCCCCGTGGGCACGCGCGTGAGCATGCAGTCATTTGTCACGCAC
GAGCGCGGGCAGGCGCTCACGCTCGACACCTGA
back to top

protein sequence of jgi.p|Trimin1|177784

>Trimin1|177784|e_gw1.159.75.1 ID=Trimin1|177784|e_gw1.159.75.1|Name=jgi.p|Trimin1|177784|organism=Tribonema minus UTEX_B_3156 |type=polypeptide|length=311bp
MSLLGSAGRAEGMSALFRAVEKRFGNLESLREPASVGVITADELRREDLE
ALFEHRAAAVHVKGFYPAAAAAALAARLELMETTNWEISSGRGLESSDVT
SISVPFNVALGKGPEAVEAYFAAARALQRRLRAPPAPGAPPLLPPIDQLR
LELDELWPHGARAARDARGRAFLPGLPRIMRGPTRSLAGFVHVDDLAPLR
AARGLFSANAYLRMPPAGGALAVYPLAVRTRWDFYRHAATLSGLMGQGAA
AQDALRRALPPPLRVRPAPGDLVLLCAQRPHAAEGFPVGTRVSMQSFVTH
ERGQALTLDT*
back to top

mRNA from alignment at Contig_159:279824..281942+

Legend: exonpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_13887 ID=mRNA_13887|Name=jgi.p|Trimin1|177784|organism=Tribonema minus UTEX_B_3156 |type=mRNA|length=2119bp|location=Sequence derived from alignment at Contig_159:279824..281942+ (Tribonema minus UTEX_B_3156 )
ATGTCACTGCTGGGTAGCGCAGGCAGGGCGGAGGGGATGTCTGCGCTATT TCGAGCTGTAGAAAAACGCTTCGGCAACCTGGAATCCTTGCGCGAGCCTG CGAGCGTGGGCGTGATTACAGCAGATGAGCTGCGAAGAGAAGATCTTGAG GCGCTCTTCGAACACAGAGCAGCAGCTGTGCATGTCAAAGGCTTCTACCC CGCTGCAGCTGCTGCAGCACTAGCTGCAAGGCTAGAATTAATGGAGACGA CGAATTGGGAAATCAGCAGTGGCCGGGGACTGGAGAGCTCAGATGTGACG AGCATCAGCGTGCCTTTCAATGTCGCTCTCGGGAAGGGACCAGAGGCTGT AGAAGGTAAGCGGGTGGTGTGCAATAATACTTACCACAGGCAATAGGGTG TGTGGTGATCACGATAGCAGCTTACTTCCCGGCTCTCTACATGCTGATGG AGCTGCCAGCAAGTTGCTCTGAACCCGTTTCAGCAATGAGCTACGGCAGT ATGTCTATAGTCATGTCCAGCATACAGTGGGTTGCAGCATCCTCTGACCA GCAATCACCCATATATGCTACAGATCAGACAAGAAATGTAACGCATTACC ATGCAACTGTCACCTTGGGACTGCCTGTCACACACGACTGTCCATCACGG TGTGCTTGCTGCAACAGCTGAAGTCTGGCCGTGGCCGAGGGACGGTGCTA CTTAGCTGCACCTGATGACTCAATCACGCTCGCTGCCGCACCATGATACA TTCATGTACGCTCTGAGGGCTGGTGCACGACTGTAGTGGCTTCAGCAGTG ACGGTGGGGAGAGCGCCTATTCAGGCGGTGATGTTGCTGCAGCTGATCGA GTTGCTGCTGCTGACGCGCAGCGCTTCCGCATCTCACTCCCCCGACTTAC TCGTCATCGTGGTTGCCTTTAAGAGTAGTGCATTGGCATCACCCCAACCT CCCGCCTTCTGCCCCCCACCACCTCCGCCTGCCGCCATGGCCGCGCAGCG TACTTCGCGGCGGCACGCGCGCTGCAGCGCCGCCTGCGCGCCCCGCCCGC CCCCGGCGCGCCCCCCCTCCTGCCCCCCATCGACCAGCTGCGCCTCGAGC TGGACGAGCTCTGGCCGCACGGCGCGCGCGCCGCGCGCGACGCGCGCGGC CGCGCCTTCCTCCCCGGCCTGCCGCGCATCATGCGCGGCCCGACGCGCTC GCTCGCGGGGTTCGTCCACGTTGACGACCTCGCGCCGCTGCGCGCGGCGC GCGGCCTCTTCAGCGCGAACGCGTACCTGCGCATGCCGCCGGCGGGCGGC GCGCTCGCGGTGTACCCGCTCGCCGTGCGCACGCGCTGGGACTTCTACCG CCACGCCGCGACGCTGTCGGGGCTCATGGTGCGTGCGGCCGCGCCGCGCG CGGTGTCGCTGAGCGCTGCTGCGGGCGTCGTGTGCGCGCGTTCGTGCTGC GGCGCCGCGTACATCGTTCGTGCGCGACAGTTGCGGCGGGCGACGGCGTG GATGTGGCGGGCCGCACCGCGCTGGCGGCGCTTGGACTGCGGCGGCGCAT GTAGACGACGCTCTGAACGCGAGAGTTTCAGTTTTGCTGTAGTTCTGGAC AGCAAGAGTGAGATGACGCGGTTTGCTCCATGCCGAGGCAGATCGCGCAA TGTCGGAAGGCTGATGGTTTGAAGGCCGCTGCGGTGCATGTCGCCGCTAT GAAGAACGCCGACGCGCACCGCGCCTCCGGGGTCAATAGCCGTCTCCACC AGAGACATGGGCTTTGTGGTCCATCAGCATGCGCGCGAGCTCACTGCCGT CTTGGCAATAACCACAGCCGCAGCGACTGCTATGTATTAGTGCACATGCG CACTGCGCTGCTACGACAGCTCAGCCTCCCCCCTCCTCCCCCCCGCCTTT GCCCATTACCTCATCGCTCAGGGCCAGGGCGCGGCGGCGCAGGACGCGCT GCGCCGCGCGCTGCCGCCGCCGCTGCGCGTGCGCCCCGCGCCGGGCGACC TCGTGCTGCTGTGCGCGCAGCGCCCGCACGCCGCGGAGGGCTTCCCCGTG GGCACGCGCGTGAGCATGCAGTCATTTGTCACGCACGAGCGCGGGCAGGC GCTCACGCTCGACACCTGA
back to top

Coding sequence (CDS) from alignment at Contig_159:279824..281942+

>mRNA_13887 ID=mRNA_13887|Name=jgi.p|Trimin1|177784|organism=Tribonema minus UTEX_B_3156 |type=CDS|length=933bp|location=Sequence derived from alignment at Contig_159:279824..281942+ (Tribonema minus UTEX_B_3156 )
ATGTCACTGCTGGGTAGCGCAGGCAGGGCGGAGGGGATGTCTGCGCTATT
TCGAGCTGTAGAAAAACGCTTCGGCAACCTGGAATCCTTGCGCGAGCCTG
CGAGCGTGGGCGTGATTACAGCAGATGAGCTGCGAAGAGAAGATCTTGAG
GCGCTCTTCGAACACAGAGCAGCAGCTGTGCATGTCAAAGGCTTCTACCC
CGCTGCAGCTGCTGCAGCACTAGCTGCAAGGCTAGAATTAATGGAGACGA
CGAATTGGGAAATCAGCAGTGGCCGGGGACTGGAGAGCTCAGATGTGACG
AGCATCAGCGTGCCTTTCAATGTCGCTCTCGGGAAGGGACCAGAGGCTGT
AGAAGCGTACTTCGCGGCGGCACGCGCGCTGCAGCGCCGCCTGCGCGCCC
CGCCCGCCCCCGGCGCGCCCCCCCTCCTGCCCCCCATCGACCAGCTGCGC
CTCGAGCTGGACGAGCTCTGGCCGCACGGCGCGCGCGCCGCGCGCGACGC
GCGCGGCCGCGCCTTCCTCCCCGGCCTGCCGCGCATCATGCGCGGCCCGA
CGCGCTCGCTCGCGGGGTTCGTCCACGTTGACGACCTCGCGCCGCTGCGC
GCGGCGCGCGGCCTCTTCAGCGCGAACGCGTACCTGCGCATGCCGCCGGC
GGGCGGCGCGCTCGCGGTGTACCCGCTCGCCGTGCGCACGCGCTGGGACT
TCTACCGCCACGCCGCGACGCTGTCGGGGCTCATGGGCCAGGGCGCGGCG
GCGCAGGACGCGCTGCGCCGCGCGCTGCCGCCGCCGCTGCGCGTGCGCCC
CGCGCCGGGCGACCTCGTGCTGCTGTGCGCGCAGCGCCCGCACGCCGCGG
AGGGCTTCCCCGTGGGCACGCGCGTGAGCATGCAGTCATTTGTCACGCAC
GAGCGCGGGCAGGCGCTCACGCTCGACACCTGA
back to top