mRNA_13872 (mRNA) Tribonema minus UTEX_B_3156

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
Namejgi.p|Trimin1|177840
Unique NamemRNA_13872
TypemRNA
OrganismTribonema minus UTEX_B_3156 (Tribonema minus UTEX_B_3156 )
Homology
BLAST of jgi.p|Trimin1|177840 vs. uniprot
Match: A0A836CJP8_9STRA (6-pyruvoyltetrahydropterin synthase n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A836CJP8_9STRA)

HSP 1 Score: 291 bits (746), Expect = 4.390e-100
Identity = 139/139 (100.00%), Postives = 139/139 (100.00%), Query Frame = 1
Query:    1 MLVAQASALYTLGIRDSIMIAHSFKGAEFGPAQQMHGATYTCDVEFCCPELTPSLNWVIDIGEASNMLSGVLAEYNFKNLNEVFPDENTTTEFMCRRIFDGVARACAGRFCGTIRVKLWESHKAWASYEGAVADYTRDV 417
            MLVAQASALYTLGIRDSIMIAHSFKGAEFGPAQQMHGATYTCDVEFCCPELTPSLNWVIDIGEASNMLSGVLAEYNFKNLNEVFPDENTTTEFMCRRIFDGVARACAGRFCGTIRVKLWESHKAWASYEGAVADYTRDV
Sbjct:    1 MLVAQASALYTLGIRDSIMIAHSFKGAEFGPAQQMHGATYTCDVEFCCPELTPSLNWVIDIGEASNMLSGVLAEYNFKNLNEVFPDENTTTEFMCRRIFDGVARACAGRFCGTIRVKLWESHKAWASYEGAVADYTRDV 139          
BLAST of jgi.p|Trimin1|177840 vs. uniprot
Match: A0A7S4DL62_HETAK (6-pyruvoyltetrahydropterin synthase n=1 Tax=Heterosigma akashiwo TaxID=2829 RepID=A0A7S4DL62_HETAK)

HSP 1 Score: 183 bits (465), Expect = 4.260e-57
Identity = 90/127 (70.87%), Postives = 102/127 (80.31%), Query Frame = 1
Query:   16 ASALYTLGIRDSIMIAHSFKGAEFGPAQQMHGATYTCDVEFCCPELTPSLNWVIDIGEASNMLSGVLAEYNFKNLNEVFPDENTTTEFMCRRIFDGVARACAGRFCGTIRVKLWESHKAWASYEGAV 396
            A A ++LG+RDSIMIAHSFKG EFGPAQQMHGATYT DVEF   EL    NWV+DIGEAS +LS VL +YNFKNLNE+FPD+NTTTEFMC+ IFD +A AC   F G++ VKL ESHKAWASY G V
Sbjct:   25 AHAKFSLGVRDSIMIAHSFKGEEFGPAQQMHGATYTVDVEFEAEELVDKCNWVVDIGEASEILSNVLRKYNFKNLNELFPDDNTTTEFMCKAIFDDIA-ACLENFKGSMCVKLHESHKAWASYTGDV 150          
BLAST of jgi.p|Trimin1|177840 vs. uniprot
Match: L1J9Q7_GUITC (6-pyruvoyltetrahydropterin synthase n=3 Tax=Guillardia theta TaxID=55529 RepID=L1J9Q7_GUITC)

HSP 1 Score: 181 bits (458), Expect = 1.760e-55
Identity = 84/119 (70.59%), Postives = 94/119 (78.99%), Query Frame = 1
Query:   28 YTLGIRDSIMIAHSFKGAEFGPAQQMHGATYTCDVEFCCPELTPSLNWVIDIGEASNMLSGVLAEYNFKNLNEVFPDENTTTEFMCRRIFDGVARACAGRFCGTIRVKLWESHKAWASY 384
            Y+LG+RDSIMIAHSF G EFGPAQ MHGATYT DVEF    L P LNWV+DIGE   ML  VL EYNFKNLNE+FP ENTTTEFMC++IF+G+     G+F G+I VKLWESH AWASY
Sbjct:   63 YSLGLRDSIMIAHSFTGKEFGPAQNMHGATYTVDVEFHVESLAPRLNWVLDIGEGMTMLKKVLGEYNFKNLNELFPGENTTTEFMCKKIFEGLCVELKGKFKGSITVKLWESHSAWASY 181          
BLAST of jgi.p|Trimin1|177840 vs. uniprot
Match: D8LHK0_ECTSI (6-pyruvoyltetrahydropterin synthase n=2 Tax=Ectocarpus TaxID=2879 RepID=D8LHK0_ECTSI)

HSP 1 Score: 178 bits (452), Expect = 5.940e-55
Identity = 82/125 (65.60%), Postives = 97/125 (77.60%), Query Frame = 1
Query:   28 YTLGIRDSIMIAHSFKGAEFGPAQQMHGATYTCDVEFCCPELTPSLNWVIDIGEASNMLSGVLAEYNFKNLNEVFPDENTTTEFMCRRIFDGVARACAGRFCGTIRVKLWESHKAWASYEGAVAD 402
            Y+LGIRDSIMIAHSF+G +FGPAQ+MHGATYT D EF    L    NWV+DIG AS ML+ VL++YNFKNLNE+FP +NTTTEFMC+ IFD +A  C   F GT+ +KLWESHKAW  YEG V +
Sbjct:   33 YSLGIRDSIMIAHSFEGPQFGPAQEMHGATYTVDAEFKTDALVEKSNWVVDIGAASEMLAAVLSKYNFKNLNEIFPGQNTTTEFMCKVIFDELAAKCGKDFHGTLCIKLWESHKAWGCYEGDVGE 157          
BLAST of jgi.p|Trimin1|177840 vs. uniprot
Match: A0A7S2V5M2_9STRA (6-pyruvoyltetrahydropterin synthase n=1 Tax=Fibrocapsa japonica TaxID=94617 RepID=A0A7S2V5M2_9STRA)

HSP 1 Score: 176 bits (445), Expect = 5.020e-54
Identity = 81/120 (67.50%), Postives = 98/120 (81.67%), Query Frame = 1
Query:   28 YTLGIRDSIMIAHSFKGAEFGPAQQMHGATYTCDVEFCCPELTPSLNWVIDIGEASNMLSGVLAEYNFKNLNEVFPDENTTTEFMCRRIFDGVARACAGRFCGTIRVKLWESHKAWASYE 387
            YTLG++DSIMIAHSF+G EFGPAQ++HGATYT DVEF    L    NWVIDIG AS +L  VLA+YNFKNL+E+FPD+NTTTEFMC+ IFD ++   A +F G++ VKLWESHKAWASY+
Sbjct:   30 YTLGVKDSIMIAHSFQGEEFGPAQKLHGATYTVDVEFMADVLESKCNWVIDIGLASEILGKVLAKYNFKNLDELFPDDNTTTEFMCKVIFDDMSAELANKFKGSLSVKLWESHKAWASYQ 149          
BLAST of jgi.p|Trimin1|177840 vs. uniprot
Match: W7T312_9STRA (6-pyruvoyltetrahydropterin synthase n=3 Tax=Monodopsidaceae TaxID=425072 RepID=W7T312_9STRA)

HSP 1 Score: 162 bits (410), Expect = 1.530e-48
Identity = 85/132 (64.39%), Postives = 96/132 (72.73%), Query Frame = 1
Query:   28 YTLGIRDSIMIAHSFKGAEFGPAQQMHGATYTCDVEFCCPELTPSLNWVIDIGEASNMLSGVLAEYNFKNLNEVFPD-ENTTTEFMCRRIF-DGVARACAGR-------FCGTIRVKLWESHKAWASYEGAV 396
            ++LGIRDSIMIAHSFKG +FGPAQ +HGATYT DV F    L P  NWVIDIGEAS  LS +L++YNFKNL++VFP+ ENTTTEFMCR I  D  A  C  R       F G+I VKLWESHKAWA YE  V
Sbjct:   33 FSLGIRDSIMIAHSFKGEQFGPAQNIHGATYTVDVTFRSKNLVPKNNWVIDIGEASTALSRILSKYNFKNLDQVFPEGENTTTEFMCRAIHRDLAAHFCTNRAKSKEERFKGSICVKLWESHKAWACYEAIV 164          
BLAST of jgi.p|Trimin1|177840 vs. uniprot
Match: A0A7S0FMK9_9STRA (6-pyruvoyltetrahydropterin synthase n=1 Tax=Minutocellus polymorphus TaxID=265543 RepID=A0A7S0FMK9_9STRA)

HSP 1 Score: 159 bits (401), Expect = 2.690e-47
Identity = 85/136 (62.50%), Postives = 98/136 (72.06%), Query Frame = 1
Query:    7 VAQASAL-YTLGIRDSIMIAHSFKG-AEFGPAQQMHGATYTCDVEFCCPELTPSLNWVIDIGEASNMLSGVLAEYNFKNLNEVFPD-ENTTTEFMCRRIFDGVA---RACAGRFCGTIRVKLWESHKAWASYEGAV 396
            +A A  L +TLG+RDS+MIAHSF     FGPA  MHGATYTCDVEF    L    NWVIDIG+AS++L+ VL+ YN KNL+EVFP  E TTTEFMC+ I DG+A   R   G F G IRVKLWESHKAWAS+ G V
Sbjct:   20 IAAAERLPFTLGVRDSLMIAHSFHNHPSFGPAGGMHGATYTCDVEFSSANLVEGTNWVIDIGKASDILADVLSRYNLKNLDEVFPGGEMTTTEFMCKTIHDGIAQRIREDVGDFKGEIRVKLWESHKAWASFVGEV 155          
BLAST of jgi.p|Trimin1|177840 vs. uniprot
Match: A0A7S2R056_9STRA (6-pyruvoyltetrahydropterin synthase n=1 Tax=Eucampia antarctica TaxID=49252 RepID=A0A7S2R056_9STRA)

HSP 1 Score: 156 bits (395), Expect = 1.220e-46
Identity = 80/128 (62.50%), Postives = 95/128 (74.22%), Query Frame = 1
Query:   28 YTLGIRDSIMIAHSFKG-AEFGPAQQMHGATYTCDVEFCCPELTPSLNWVIDIGEASNMLSGVLAEYNFKNLNEVFPDEN-TTTEFMCRRIFDGVA---RACAGRFCGTIRVKLWESHKAWASYEGAV 396
            +TLG+RDSIMIAHSF     FGPA  MHGATYTCDVEF C EL    NWVIDIG+AS++LS +LA+YN KNL+E+F D+  TTTEFMCR I  G+A   R     F G + VKLWESHKAWASY+ ++
Sbjct:    9 FTLGVRDSIMIAHSFHNHPSFGPAGGMHGATYTCDVEFACEELDSDANWVIDIGKASDILSEILAKYNLKNLDEIFGDDILTTTEFMCREICQGIAEKVREQVPDFHGDLCVKLWESHKAWASYQQSI 136          
BLAST of jgi.p|Trimin1|177840 vs. uniprot
Match: A0A7S4K2E3_9STRA (6-pyruvoyltetrahydropterin synthase n=1 Tax=Odontella aurita TaxID=265563 RepID=A0A7S4K2E3_9STRA)

HSP 1 Score: 157 bits (398), Expect = 3.510e-46
Identity = 82/128 (64.06%), Postives = 95/128 (74.22%), Query Frame = 1
Query:   28 YTLGIRDSIMIAHSFKG-AEFGPAQQMHGATYTCDVEFCCPELTPSLNWVIDIGEASNMLSGVLAEYNFKNLNEVFPD-ENTTTEFMCRRIFDGVARACAGR---FCGTIRVKLWESHKAWASYEGAV 396
            +TLG+RDS+MIAHSF G   FGPA  MHGATYTCDVEF C +L    NWVIDIG+AS +LS +L++YN KNL+EVF + E TTTEFMC+ I  GVA+        F G I VKLWESHKAWASYEG V
Sbjct:   78 FTLGVRDSLMIAHSFHGHPAFGPAGGMHGATYTCDVEFRCKDLAQVTNWVIDIGKASEILSDILSKYNLKNLDEVFSNGEMTTTEFMCKVIHQGVAQRVREEVKDFKGEISVKLWESHKAWASYEGEV 205          
BLAST of jgi.p|Trimin1|177840 vs. uniprot
Match: A0A448ZT77_9STRA (6-pyruvoyltetrahydropterin synthase n=1 Tax=Pseudo-nitzschia multistriata TaxID=183589 RepID=A0A448ZT77_9STRA)

HSP 1 Score: 155 bits (391), Expect = 1.460e-45
Identity = 76/126 (60.32%), Postives = 93/126 (73.81%), Query Frame = 1
Query:   28 YTLGIRDSIMIAHSFKG-AEFGPAQQMHGATYTCDVEFCCPELTPSLNWVIDIGEASNMLSGVLAEYNFKNLNEVFPDEN-TTTEFMCRRIFDGVARAC---AGRFCGTIRVKLWESHKAWASYEG 390
            ++LG+RDS+MIAHSF G   FGPA  MHGATYTCDV+F   EL P  NWVIDIG+A ++LS VL+ YN KNL+EVFPD+  TTTEFMC++I D +          F G +R+KLWESHKAWA+Y G
Sbjct:   35 FSLGVRDSLMIAHSFHGHPSFGPAGGMHGATYTCDVDFLAEELHPETNWVIDIGKALDILSKVLSRYNLKNLDEVFPDKTMTTTEFMCKQIHDDIRELLETECKEFKGAVRIKLWESHKAWATYTG 160          
The following BLAST results are available for this feature:
BLAST of jgi.p|Trimin1|177840 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
A0A836CJP8_9STRA4.390e-100100.006-pyruvoyltetrahydropterin synthase n=1 Tax=Tribon... [more]
A0A7S4DL62_HETAK4.260e-5770.876-pyruvoyltetrahydropterin synthase n=1 Tax=Hetero... [more]
L1J9Q7_GUITC1.760e-5570.596-pyruvoyltetrahydropterin synthase n=3 Tax=Guilla... [more]
D8LHK0_ECTSI5.940e-5565.606-pyruvoyltetrahydropterin synthase n=2 Tax=Ectoca... [more]
A0A7S2V5M2_9STRA5.020e-5467.506-pyruvoyltetrahydropterin synthase n=1 Tax=Fibroc... [more]
W7T312_9STRA1.530e-4864.396-pyruvoyltetrahydropterin synthase n=3 Tax=Monodo... [more]
A0A7S0FMK9_9STRA2.690e-4762.506-pyruvoyltetrahydropterin synthase n=1 Tax=Minuto... [more]
A0A7S2R056_9STRA1.220e-4662.506-pyruvoyltetrahydropterin synthase n=1 Tax=Eucamp... [more]
A0A7S4K2E3_9STRA3.510e-4664.066-pyruvoyltetrahydropterin synthase n=1 Tax=Odonte... [more]
A0A448ZT77_9STRA1.460e-4560.326-pyruvoyltetrahydropterin synthase n=1 Tax=Pseudo... [more]

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
Contig_159contigContig_159:212832..214353 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Tribonema minus UTEX_B_31562021-06-17
Properties
Property NameValue
ProteomeIdTrimin1|177840|e_gw1.159.84.1
Description6-pyruvoyl tetrahydropterin synthase
COG categoryS
Max annot lvl2759|Eukaryota
EggNOG OGs2CYMG@1|root,2S557@2759|Eukaryota
Evalue2.89e-56
Seed ortholog55529.EKX45072
Hectar predicted targeting categoryother localisation
Ec32 ortholog description6-pyruvoyl tetrahydropterin synthase/QueD family protein
Ec32 orthologEc-10_002190.1
TranscriptId178162
TrackFilteredModels1
ProteinId177840
Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesTypePosition
jgi.p|Trimin1|177840gene_13872Tribonema minus UTEX_B_3156 geneContig_159 212832..214353 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
jgi.p|Trimin1|177840Trimin1|177840|e_gw1.159.84.1Tribonema minus UTEX_B_3156 polypeptideContig_159 212832..214353 -


The following exon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
exon_13872_3exon_13872_3Tribonema minus UTEX_B_3156 exonContig_159 212832..212995 -
exon_13872_2exon_13872_2Tribonema minus UTEX_B_3156 exonContig_159 213559..213757 -
exon_13872_1exon_13872_1Tribonema minus UTEX_B_3156 exonContig_159 214297..214353 -


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
CDS_13872CDS_13872Tribonema minus UTEX_B_3156 CDSContig_159 214297..214353 -


Sequences
The following sequences are available for this feature:

spliced messenger RNA

>mRNA_13872 ID=mRNA_13872|Name=jgi.p|Trimin1|177840|organism=Tribonema minus UTEX_B_3156 |type=mRNA|length=420bp|location=Sequence derived from alignment at Contig_159:212832..214353- (Tribonema minus UTEX_B_3156 )|Notes=Excludes all bases but those of type(s): exon.  
ATGCTGGTGGCGCAGGCCTCCGCTCTTTACACCCTGGGCATCAGGGACTC
CATCATGATCGCGCACAGCTTCAAGGGCGCGGAGTTCGGGCCGGCGCAGC
AGATGCACGGCGCCACCTACACGTGCGACGTCGAGTTCTGCTGCCCCGAG
CTGACGCCGTCGCTCAACTGGGTCATCGACATCGGCGAGGCCTCCAACAT
GCTGTCCGGCGTGCTGGCCGAGTACAACTTCAAGAACCTGAACGAGGTCT
TCCCGGACGAGAACACGACGACCGAGTTCATGTGCCGGCGCATCTTCGAC
GGCGTCGCGCGCGCGTGCGCGGGCCGCTTCTGCGGCACCATCCGCGTCAA
GCTCTGGGAGTCTCACAAGGCGTGGGCGTCGTACGAGGGCGCCGTCGCCG
ACTACACGCGCGACGTGTAG
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protein sequence of jgi.p|Trimin1|177840

>Trimin1|177840|e_gw1.159.84.1 ID=Trimin1|177840|e_gw1.159.84.1|Name=jgi.p|Trimin1|177840|organism=Tribonema minus UTEX_B_3156 |type=polypeptide|length=140bp
MLVAQASALYTLGIRDSIMIAHSFKGAEFGPAQQMHGATYTCDVEFCCPE
LTPSLNWVIDIGEASNMLSGVLAEYNFKNLNEVFPDENTTTEFMCRRIFD
GVARACAGRFCGTIRVKLWESHKAWASYEGAVADYTRDV*
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mRNA from alignment at Contig_159:212832..214353-

Legend: polypeptideexonCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_13872 ID=mRNA_13872|Name=jgi.p|Trimin1|177840|organism=Tribonema minus UTEX_B_3156 |type=mRNA|length=1522bp|location=Sequence derived from alignment at Contig_159:212832..214353- (Tribonema minus UTEX_B_3156 )
ATGCTGGTGGCGCAGGCCTCCGCTCTTTACACCCTGGGCATCAGGGACTC CATCATGGTGCGTGAAAAGATCCCCAGATCCAAGGTTTCCTGATGAACGA CGATTAGTTCAAACTCGAGGCATCACCTGATGCATTGTGTTGTACATGAC ATCAGCTTGATGTTTTGATATCATGACATACTGCAACTCCACACAATTGG CTCACATGCTGGAGGTCTCGCATGACTCTGCAGTGTAGTAACTCCTGAAC GCAAGACTCGCTGAGCTGCCTTGCAGGCACGTCAGCACTCTGGCGCACTA GTCTTCAGAGTAAGATTGACCAGTAATCAATCCATCTGCAGTCCCTTGAT GGTTGAATGCGAGCTTCAGGATGTTGCTGTGCGAGAGTCTGGTGAAGGAG GGCACCCTGCACCAGCCATGTAGCGCATCCGTGCAGTGCTCCTCCATCTG TGACCTCACACCGGACCAGAAGCGAACCACCCCATGCGTCGATCCCACGC TCAAGCGCTCTGTCCACCTGGCCCATTGCTACCGAGAGGAGTGTCGCCCA CCGCCGTCCAATGCTGAGCAGCGCTGCTGCTCGCTCGCCGCGCCAGATCG CGCACAGCTTCAAGGGCGCGGAGTTCGGGCCGGCGCAGCAGATGCACGGC GCCACCTACACGTGCGACGTCGAGTTCTGCTGCCCCGAGCTGACGCCGTC GCTCAACTGGGTCATCGACATCGGCGAGGCCTCCAACATGCTGTCCGGCG TGCTGGCCGAGTACAACTTCAAGAACCTGAACGAGGTCTTCCCGGGTGAG TGCAGTGCCGTAGCCGCAAGCAGTCGGGTCTTGTGCGGATGGCGTGCTGC CATCTGCGTCAGCTGCGCGCTTGCACGGCACGCGTCAGCGTAACGCATGT CCTAATGATGCGCCTGTTGTTTCGATGCACGTGCACTCCGTCTGGAGCTC TGTTGGACGGGACCCTCCGCGCATCTCGCTCTTGCCACACGGCTCATGCG TTGCAGGCATTGCTGCCGTCCACTGCGTATCTGCAGCTTGGGCTCTCTTG CACTTGCACACACTGGTGATCGTTTTCTGGCTTGCGCCGCCTATGCTGTC GTGCTCTCGTTGCGACTTCAAAGCCAAAGCGCGGCCGCCGACACAGTACC ACCGGGAGCCGGCGATCTATACGGACTAAGTGACTGATTGTATCGTGCCA TCGAGAGGACTGCGATGACGCATTAAATCACGGCCACATACGCACGCACG CACACAGCAGTGTCGTTGTGGTGCCGCCCTTGCGCGCTTTGCATTCACGC GTGCGCGCGCCGCTCACACACGGCGCCCGCGGCGTCGCCTGCCTCCGCCC GCGCGCAGACGAGAACACGACGACCGAGTTCATGTGCCGGCGCATCTTCG ACGGCGTCGCGCGCGCGTGCGCGGGCCGCTTCTGCGGCACCATCCGCGTC AAGCTCTGGGAGTCTCACAAGGCGTGGGCGTCGTACGAGGGCGCCGTCGC CGACTACACGCGCGACGTGTAG
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Coding sequence (CDS) from alignment at Contig_159:212832..214353-

>mRNA_13872 ID=mRNA_13872|Name=jgi.p|Trimin1|177840|organism=Tribonema minus UTEX_B_3156 |type=CDS|length=420bp|location=Sequence derived from alignment at Contig_159:212832..214353- (Tribonema minus UTEX_B_3156 )
ATGCTGGTGGCGCAGGCCTCCGCTCTTTACACCCTGGGCATCAGGGACTC
CATCATGATCGCGCACAGCTTCAAGGGCGCGGAGTTCGGGCCGGCGCAGC
AGATGCACGGCGCCACCTACACGTGCGACGTCGAGTTCTGCTGCCCCGAG
CTGACGCCGTCGCTCAACTGGGTCATCGACATCGGCGAGGCCTCCAACAT
GCTGTCCGGCGTGCTGGCCGAGTACAACTTCAAGAACCTGAACGAGGTCT
TCCCGGACGAGAACACGACGACCGAGTTCATGTGCCGGCGCATCTTCGAC
GGCGTCGCGCGCGCGTGCGCGGGCCGCTTCTGCGGCACCATCCGCGTCAA
GCTCTGGGAGTCTCACAAGGCGTGGGCGTCGTACGAGGGCGCCGTCGCCG
ACTACACGCGCGACGTGTAG
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