mRNA_13859 (mRNA) Tribonema minus UTEX_B_3156

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
Namejgi.p|Trimin1|177803
Unique NamemRNA_13859
TypemRNA
OrganismTribonema minus UTEX_B_3156 (Tribonema minus UTEX_B_3156 )
Homology
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BLAST of jgi.p|Trimin1|177803 vs. uniprot
Match: A0A835Z8M1_9STRA (P-loop containing nucleoside triphosphate hydrolase protein n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A835Z8M1_9STRA)

HSP 1 Score: 196 bits (497), Expect = 2.040e-63
Identity = 98/98 (100.00%), Postives = 98/98 (100.00%), Query Frame = 1 
Query:    1 MQSQVFEVAYNSAQNMLVCAPTGAGKTNVAMLALLQLVKRHMHNGRVDRHGLKAVYVAPMKALAQEVVAKFSQRLKPLGLVVKEYTGDMQLTRAEVCK 294
            MQSQVFEVAYNSAQNMLVCAPTGAGKTNVAMLALLQLVKRHMHNGRVDRHGLKAVYVAPMKALAQEVVAKFSQRLKPLGLVVKEYTGDMQLTRAEVCK
Sbjct:    1 MQSQVFEVAYNSAQNMLVCAPTGAGKTNVAMLALLQLVKRHMHNGRVDRHGLKAVYVAPMKALAQEVVAKFSQRLKPLGLVVKEYTGDMQLTRAEVCK 98
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BLAST of jgi.p|Trimin1|177803 vs. uniprot
Match: D7FN81_ECTSI (Uncharacterized protein n=2 Tax=Ectocarpus TaxID=2879 RepID=D7FN81_ECTSI)

HSP 1 Score: 150 bits (378), Expect = 5.580e-40
Identity = 70/96 (72.92%), Postives = 88/96 (91.67%), Query Frame = 1 
Query:    1 MQSQVFEVAYNSAQNMLVCAPTGAGKTNVAMLALLQLVKRHMHNGRVDRHGLKAVYVAPMKALAQEVVAKFSQRLKPLGLVVKEYTGDMQLTRAEV 288
            MQS+V+  A+ +++N+LVCAPTGAGKTNVAML+LLQLV++H+  G +DR G+KA+YVAPMKALAQEVV+KFSQRLKPLGLVV+EYTGDMQL++ EV
Sbjct:  612 MQSKVYHAAFKTSENLLVCAPTGAGKTNVAMLSLLQLVRQHIRGGALDRSGIKAIYVAPMKALAQEVVSKFSQRLKPLGLVVREYTGDMQLSKQEV 707
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BLAST of jgi.p|Trimin1|177803 vs. uniprot
Match: W7TU71_9STRA (Activating signal cointegrator 1 complex subunit 3 n=2 Tax=Monodopsidaceae TaxID=425072 RepID=W7TU71_9STRA)

HSP 1 Score: 143 bits (361), Expect = 1.090e-37
Identity = 71/97 (73.20%), Postives = 85/97 (87.63%), Query Frame = 1 
Query:    1 MQSQVFEVAYNSAQNMLVCAPTGAGKTNVAMLALLQLVKRHMHNGRVDRH-GLKAVYVAPMKALAQEVVAKFSQRLKPLGLVVKEYTGDMQLTRAEV 288
            +QS+VFE AYNS +N+L+CAPTGAGKTN+AMLALL LV+ H+  GRV+R   LKA+Y+APMKALAQEVVAKFS+RLK LGLVV+E TGDMQLT+ EV
Sbjct:  529 IQSEVFEAAYNSQENLLICAPTGAGKTNIAMLALLALVREHVKGGRVERGPNLKAIYIAPMKALAQEVVAKFSERLKGLGLVVRELTGDMQLTKREV 625
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BLAST of jgi.p|Trimin1|177803 vs. uniprot
Match: A0A7S3M5Q6_9STRA (Hypothetical protein (Fragment) n=2 Tax=Spumella elongata TaxID=89044 RepID=A0A7S3M5Q6_9STRA)

HSP 1 Score: 133 bits (334), Expect = 4.700e-34
Identity = 65/98 (66.33%), Postives = 80/98 (81.63%), Query Frame = 1 
Query:    1 MQSQVFEVAYNSAQNMLVCAPTGAGKTNVAMLALLQLVK--RHMHNGRVDRHGLKAVYVAPMKALAQEVVAKFSQRLKPLGLVVKEYTGDMQLTRAEV 288
            +QS+VF  AY S +NMLVCAPTGAGKTNVAML +LQL+   R    G +D+  +KAVY+APMKALAQEVV KF++RL PLGLVV+E+TGDMQLT+ E+
Sbjct:  520 IQSRVFPTAYQSFENMLVCAPTGAGKTNVAMLTMLQLINQYRDSRTGVIDKAAIKAVYIAPMKALAQEVVTKFAERLNPLGLVVREFTGDMQLTKKEI 617
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BLAST of jgi.p|Trimin1|177803 vs. uniprot
Match: A0A2J7ZH59_9CHLO (Activating signal cointegrator 1 complex subunit 3 (Fragment) n=1 Tax=Tetrabaena socialis TaxID=47790 RepID=A0A2J7ZH59_9CHLO)

HSP 1 Score: 122 bits (307), Expect = 5.630e-33
Identity = 58/98 (59.18%), Postives = 79/98 (80.61%), Query Frame = 1 
Query:    1 MQSQVFEVAYNSAQNMLVCAPTGAGKTNVAMLALLQLVKRHMHNGRVDRHGLKAVYVAPMKALAQEVVAKFSQRLKPLGLVVKEYTGDMQLTRAEVCK 294
            +QS++F  AYNS +N+LVCAPTGAGKTN+AM+A+L+ V  +M +G + R   K VYVAPMKALA EV + F++RL+PLGL+V+E TGDMQLT+ E+ +
Sbjct:  103 IQSRIFPTAYNSNENILVCAPTGAGKTNIAMIAVLREVGSNMRHGVIQRADFKIVYVAPMKALAAEVTSSFAKRLEPLGLLVRELTGDMQLTKKELAE 200
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BLAST of jgi.p|Trimin1|177803 vs. uniprot
Match: A0A1I8NZ61_STOCA (Uncharacterized protein n=2 Tax=Muscinae TaxID=43910 RepID=A0A1I8NZ61_STOCA)

HSP 1 Score: 129 bits (325), Expect = 7.850e-33
Identity = 62/96 (64.58%), Postives = 79/96 (82.29%), Query Frame = 1 
Query:    1 MQSQVFEVAYNSAQNMLVCAPTGAGKTNVAMLALLQLVKRHMHNGRVDRHGLKAVYVAPMKALAQEVVAKFSQRLKPLGLVVKEYTGDMQLTRAEV 288
            +QS V+ VAY+S +NMLVCAPTGAGKTNVAMLA++  ++ H+ NG ++R   K VY+APMKALA E+VA FS+RLK L +VVKE TGDMQLT+AE+
Sbjct:  489 IQSVVYPVAYHSNENMLVCAPTGAGKTNVAMLAIVHTIRSHLENGVINRDQFKIVYIAPMKALASEMVANFSKRLKELNIVVKELTGDMQLTKAEM 584
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BLAST of jgi.p|Trimin1|177803 vs. uniprot
Match: A0A7S3ARR0_9EUKA (Hypothetical protein (Fragment) n=1 Tax=Haptolina ericina TaxID=156174 RepID=A0A7S3ARR0_9EUKA)

HSP 1 Score: 121 bits (303), Expect = 7.930e-33
Identity = 61/96 (63.54%), Postives = 75/96 (78.12%), Query Frame = 1 
Query:    1 MQSQVFEVAYNSAQNMLVCAPTGAGKTNVAMLALLQLVKRHMHNGRVDRHGLKAVYVAPMKALAQEVVAKFSQRLKPLGLVVKEYTGDMQLTRAEV 288
            +QS V   A  S +NMLVCAPTGAGKTNVA+L+++Q V   + NG +DR  LK VY+APMKALAQE+V KFS+ L PLGL V+EYTGDMQLT+ E+
Sbjct:   63 LQSAVVGTALYSNENMLVCAPTGAGKTNVALLSVMQQVGSCVENGVLDRDKLKMVYIAPMKALAQELVGKFSKSLAPLGLQVREYTGDMQLTKREI 158
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BLAST of jgi.p|Trimin1|177803 vs. uniprot
Match: A0A7S0NSU5_9EUKA (Hypothetical protein (Fragment) n=1 Tax=Calcidiscus leptoporus TaxID=127549 RepID=A0A7S0NSU5_9EUKA)

HSP 1 Score: 120 bits (301), Expect = 1.830e-32
Identity = 61/98 (62.24%), Postives = 73/98 (74.49%), Query Frame = 1 
Query:    1 MQSQVFEVAYNSAQNMLVCAPTGAGKTNVAMLALLQLVKRHMHNGRVDRHGLKAVYVAPMKALAQEVVAKFSQRLKPLGLVVKEYTGDMQLTRAEVCK 294
            +QS V   A  S +NMLVCAPTGAGKTNVA+LALLQ V   +  G + R  LK VY+APMKALAQE+ +KFS+ L PL L V+EYTGDMQLT+ E+ K
Sbjct:   62 LQSAVMNTALYSQENMLVCAPTGAGKTNVALLALLQQVGTCLEGGVLQREQLKVVYMAPMKALAQEIASKFSKALAPLALAVREYTGDMQLTKRELLK 159
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BLAST of jgi.p|Trimin1|177803 vs. uniprot
Match: A0A7R9U1M1_9STRA (Hypothetical protein (Fragment) n=1 Tax=Pinguiococcus pyrenoidosus TaxID=172671 RepID=A0A7R9U1M1_9STRA)

HSP 1 Score: 128 bits (322), Expect = 1.970e-32
Identity = 69/96 (71.88%), Postives = 78/96 (81.25%), Query Frame = 1 
Query:    1 MQSQVFEVAYNSAQNMLVCAPTGAGKTNVAMLALLQLVKRHMHN-GRVDRHGLKAVYVAPMKALAQEVVAKFSQRLKPLGLVVKEYTGDMQLTRAE 285
            MQS VF+ A+N   N+LVCAPTGAGKTNVAML LLQ VK  + + G +DR  +KAVYVAPMKALAQEVVAKFS+RL+ LGL VKEYTGD QLTR E
Sbjct:  448 MQSSVFDAAFNRTGNILVCAPTGAGKTNVAMLVLLQHVKTAIDDDGVLDRQRVKAVYVAPMKALAQEVVAKFSKRLQCLGLTVKEYTGDNQLTREE 543
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BLAST of jgi.p|Trimin1|177803 vs. uniprot
Match: A0A2D4FTX2_MICCO (Helicase ATP-binding domain-containing protein (Fragment) n=4 Tax=Sauria TaxID=32561 RepID=A0A2D4FTX2_MICCO)

HSP 1 Score: 122 bits (305), Expect = 2.160e-32
Identity = 55/98 (56.12%), Postives = 78/98 (79.59%), Query Frame = 1 
Query:    1 MQSQVFEVAYNSAQNMLVCAPTGAGKTNVAMLALLQLVKRHMHNGRVDRHGLKAVYVAPMKALAQEVVAKFSQRLKPLGLVVKEYTGDMQLTRAEVCK 294
            +QS VFE AYN+ +NML+CAPTGAGKTN+AML +L  +++H+  G + +   K +YVAPMKALA E+   FS+RL+PLG++VKE TGDMQL+++E+ +
Sbjct:   17 IQSIVFETAYNTNENMLICAPTGAGKTNIAMLTVLHEIRQHVQQGVIKKDEFKIIYVAPMKALAAEMTNYFSKRLEPLGIMVKELTGDMQLSKSEILR 114
The following BLAST results are available for this feature:
BLAST of jgi.p|Trimin1|177803 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
A0A835Z8M1_9STRA2.040e-63100.00P-loop containing nucleoside triphosphate hydrolas... [more]
D7FN81_ECTSI5.580e-4072.92Uncharacterized protein n=2 Tax=Ectocarpus TaxID=2... [more]
W7TU71_9STRA1.090e-3773.20Activating signal cointegrator 1 complex subunit 3... [more]
A0A7S3M5Q6_9STRA4.700e-3466.33Hypothetical protein (Fragment) n=2 Tax=Spumella e... [more]
A0A2J7ZH59_9CHLO5.630e-3359.18Activating signal cointegrator 1 complex subunit 3... [more]
A0A1I8NZ61_STOCA7.850e-3364.58Uncharacterized protein n=2 Tax=Muscinae TaxID=439... [more]
A0A7S3ARR0_9EUKA7.930e-3363.54Hypothetical protein (Fragment) n=1 Tax=Haptolina ... [more]
A0A7S0NSU5_9EUKA1.830e-3262.24Hypothetical protein (Fragment) n=1 Tax=Calcidiscu... [more]
A0A7R9U1M1_9STRA1.970e-3271.88Hypothetical protein (Fragment) n=1 Tax=Pinguiococ... [more]
A0A2D4FTX2_MICCO2.160e-3256.12Helicase ATP-binding domain-containing protein (Fr... [more]

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
Contig_159contigContig_159:130690..133004 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Tribonema minus UTEX_B_31562021-06-17
Properties
Property NameValue
ProteomeIdTrimin1|177803|e_gw1.159.15.1
BRITEko00000,ko00001,ko00002,ko01000,ko03041,ko03400
KEGG ModuleM00354,M00355
KEGG Pathwayko03040,map03040
KEGG koko:K12854,ko:K18663
EC3.6.4.12,3.6.4.13
Descriptionhelicase activity
COG categoryL
Max annot lvl2759|Eukaryota
EggNOG OGsCOG1204@1|root,KOG0952@2759|Eukaryota
Evalue9.14e-41
Seed ortholog2880.D7FN81
Hectar predicted targeting categoryother localisation
TranscriptId178125
TrackFilteredModels1
ProteinId177803
Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesTypePosition
jgi.p|Trimin1|177803gene_13859Tribonema minus UTEX_B_3156 geneContig_159 130690..133004 +


The following exon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
exon_13859_1exon_13859_1Tribonema minus UTEX_B_3156 exonContig_159 130690..130800 +
exon_13859_2exon_13859_2Tribonema minus UTEX_B_3156 exonContig_159 131982..132053 +
exon_13859_3exon_13859_3Tribonema minus UTEX_B_3156 exonContig_159 132891..133004 +


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
CDS_13859CDS_13859Tribonema minus UTEX_B_3156 CDSContig_159 130690..130800 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
jgi.p|Trimin1|177803Trimin1|177803|e_gw1.159.15.1Tribonema minus UTEX_B_3156 polypeptideContig_159 130690..133004 +


Sequences
The following sequences are available for this feature:

spliced messenger RNA

>mRNA_13859 ID=mRNA_13859|Name=jgi.p|Trimin1|177803|organism=Tribonema minus UTEX_B_3156 |type=mRNA|length=297bp|location=Sequence derived from alignment at Contig_159:130690..133004+ (Tribonema minus UTEX_B_3156 )|Notes=Excludes all bases but those of type(s): exon.  
ATGCAGTCGCAGGTGTTCGAAGTCGCCTACAACAGCGCTCAGAACATGCT
GGTGTGCGCGCCAACGGGCGCGGGCAAGACCAACGTGGCCATGCTCGCGC
TGCTGCAGCTGGTGAAACGGCACATGCACAATGGGCGCGTGGACCGACAT
GGCCTCAAGGCCGTATACGTGGCCCCCATGAAGGCGCTCGCGCAGGAGGT
CGTTGCCAAGTTCAGCCAGCGCCTCAAGCCGCTGGGCCTCGTCGTCAAGG
AGTACACGGGCGACATGCAGCTCACCAGGGCGGAGGTATGTAAGTAG
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protein sequence of jgi.p|Trimin1|177803

>Trimin1|177803|e_gw1.159.15.1 ID=Trimin1|177803|e_gw1.159.15.1|Name=jgi.p|Trimin1|177803|organism=Tribonema minus UTEX_B_3156 |type=polypeptide|length=99bp
MQSQVFEVAYNSAQNMLVCAPTGAGKTNVAMLALLQLVKRHMHNGRVDRH
GLKAVYVAPMKALAQEVVAKFSQRLKPLGLVVKEYTGDMQLTRAEVCK*
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mRNA from alignment at Contig_159:130690..133004+

Legend: exonpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_13859 ID=mRNA_13859|Name=jgi.p|Trimin1|177803|organism=Tribonema minus UTEX_B_3156 |type=mRNA|length=2315bp|location=Sequence derived from alignment at Contig_159:130690..133004+ (Tribonema minus UTEX_B_3156 )
ATGCAGTCGCAGGTGTTCGAAGTCGCCTACAACAGCGCTCAGAACATGCT
GGTGTGCGCGCCAACGGGCGCGGGCAAGACCAACGTGGCCATGCTCGCGC
TGCTGCAGCTGGTGAGTGCTCATACTCCCTACACCTTCATGCCAAAACAT
TGTACTTGAGGGGGGGTATCGAGTGGTGACGCTGGCGTCGTGGCGTGCTG
TTGTGCGGAAGCATCCGACTCACACAAGTCGGCACTCTACCGATCACGTC
CTTGTCGTTTTCCAGACGTGCACGGAGGCGGCTGCCGCTGCAACGCGCGG
TCCTCAGGGTTAGGGCCAGGGTTGAGCAAGATGACCGCTCTGCCTACGAC
CGCATGCAAGAGGGCCACTGCACGATGCGTTTACTGATGCTGCTGCGGTC
GGACAATGCGCAGCAGCGTCGCCTTGTGCGGCATGTGACGTGTGCGTACT
GCTCGCACACGTCGCAGCTCCTCAGAAAGACAGCGGCGCACGGCGCGTCA
CGAGCACGCTGCTGGCGCATGTTGCGGATGCGATGCCCTGCCGCCGAGAT
GTCGGTACATGACAGCCGCTCTTGTCCATGCTGACCTAGGGACAGAATTA
GGGTCAGGCGCTGGCGCCAGCTATGCACCACGCAGTGCAGTCACCGCACA
GCACAAACATCCGCATCGTGTCGTGATAGGTACCGTCAGATGATGATGTG
GCATGTATTGTCATCAGCTTATGGTCTGGAGCGACGGGTGCCGCACTTTG
CCCGCGCACTTGGCGTTGGTTGCTGGCCGGCATGCAGTGCAGCGCCCTCG
CAGCGAATCTGCAGCAACGCAAAGTCTGCGGATTCATTGCCGACTGCTGA
CATGACACACCAGCTCGCTCGCTTAATGTCGCCTGTGCTGGGTGCTGCGC
TGCATGATTTTTGCCCCCGAGTGCTTGACAGTGTTGCGAGTGCTCAACAT
CACCTACAACTTGTGGTGCCGGCGGCGGTTGTAGCCGTCTCTGGGAACTT
GGCGCTCTTTCCTGCCACTTTTTTGCATGCCAGCCACCGGCAATCTGGTG
TGTTTCACGACATAGTAGAGTCTGGTATAACATTGGCTTCTGAGTGCGCA
CAGCAGCCACGCTTGGCTGTGCTACTTAACTGTACTTAACTGACAGCATC
GCTAGTTCAACTTGTACCTTGCGGAGCGCTGCACTGATATGAGACACACG
TGCATGAGGTGCGATGACGCTGAATCGCCTCCGCACACACATGTCAACTG
ACGGCTGTGCACTCGTTTTCGCCCCCATTGGCGGTTTCGCAGGTGAAACG
GCACATGCACAATGGGCGCGTGGACCGACATGGCCTCAAGGCCGTATACG
TGGCCCCCATGAAGGTACGTCAATTTACATGATGTATCCCCCCCCTCCTT
CGTCGGCTGCCTGTGGCATGCACACGCACTCCGCCCTTCAGCCGTAGCTT
GATGCTGGTTTTACTTTAGCCATTTTGTACCGGTGAATCGCACTGTTGAT
CCTGTGGTTGCCTTGGGGCAGCGACATGAGGAGCGCTTGTCACTTCGCAC
TGCACGCATTGGTTTGCTGCGTGTGCCGCACTGTGCGCACGATCACGACC
GTGGCGCGTGTCGGTCGCACTCTCGTGCCGCCGCCACCAGCGTGCGGACC
TGCGCTAGCTGCAGCATTGGGGTTGGGATCGGGGTTAGGCGCCAGGGGTT
GTCCGCGTACCGAAGTCTGCGCTGCTGCCGGTGCTTGCCGCTGCGTCCCA
GCGTGCTGCGTCGATGGTGACGCGCGCTGCGGACTGCAACCTGTCGCTGG
CGCGTTCAGCGGCGTTGTTCACGTCCAGAGCGTTTATTCTGCAGTGCCAA
GCGCAGGGCATCAATACGTATATGTATATATATATGAATGATCTCCAGTA
CATCTTTGCCTCTACGGAATCCATGCAACCAGATCAGTCACGCGTTCGCT
GCTCTTAGCTGCTCCCACTCGGACGCTGGCTGAGGGCCGGCGGCCCTAGC
GTTAATGTCAGGCCAGCAGCGGCGGCCTTGGGGCCTCGCAGCAAAATGTA
ACAAGGGCAACGCTCGCAATTGCCTCATTGTCTTCTGCTGGTGATAAGGT
GGTTTGTGAATACGCTCTGCCTTTCCTTGTGTGCTATCATCCGCTGCTGG
TGAGGTGCTGAACGCTTGCCTTTGCCGCGTGTGCTGGTTGTTCCCGCGCA
GGCGCTCGCGCAGGAGGTCGTTGCCAAGTTCAGCCAGCGCCTCAAGCCGC
TGGGCCTCGTCGTCAAGGAGTACACGGGCGACATGCAGCTCACCAGGGCG
GAGGTATGTAAGTAG
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Coding sequence (CDS) from alignment at Contig_159:130690..133004+

>mRNA_13859 ID=mRNA_13859|Name=jgi.p|Trimin1|177803|organism=Tribonema minus UTEX_B_3156 |type=CDS|length=297bp|location=Sequence derived from alignment at Contig_159:130690..133004+ (Tribonema minus UTEX_B_3156 )
ATGCAGTCGCAGGTGTTCGAAGTCGCCTACAACAGCGCTCAGAACATGCT
GGTGTGCGCGCCAACGGGCGCGGGCAAGACCAACGTGGCCATGCTCGCGC
TGCTGCAGCTGGTGAAACGGCACATGCACAATGGGCGCGTGGACCGACAT
GGCCTCAAGGCCGTATACGTGGCCCCCATGAAGGCGCTCGCGCAGGAGGT
CGTTGCCAAGTTCAGCCAGCGCCTCAAGCCGCTGGGCCTCGTCGTCAAGG
AGTACACGGGCGACATGCAGCTCACCAGGGCGGAGGTATGTAAGTAG
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