mRNA_13802 (mRNA) Tribonema minus UTEX_B_3156

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
Namejgi.p|Trimin1|176435
Unique NamemRNA_13802
TypemRNA
OrganismTribonema minus UTEX_B_3156 (Tribonema minus UTEX_B_3156 )
Homology
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BLAST of jgi.p|Trimin1|176435 vs. uniprot
Match: A0A835Z9W9_9STRA (JmjC domain-containing protein n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A835Z9W9_9STRA)

HSP 1 Score: 279 bits (714), Expect = 1.580e-95
Identity = 129/129 (100.00%), Postives = 129/129 (100.00%), Query Frame = 1 
Query:    1 MTPFLDAAQSFTFYCGPPRSGAPFHEHTSAWNACVYGYKRWALLPPCAALTTRAHSSHWLSNGAGEGEGGGPPQGALEFVQGPGEVVFVPPHWTHAVLNLTDVVGVASEFAAHAYPPDLPPPRRKEAPP 387
            MTPFLDAAQSFTFYCGPPRSGAPFHEHTSAWNACVYGYKRWALLPPCAALTTRAHSSHWLSNGAGEGEGGGPPQGALEFVQGPGEVVFVPPHWTHAVLNLTDVVGVASEFAAHAYPPDLPPPRRKEAPP
Sbjct:    1 MTPFLDAAQSFTFYCGPPRSGAPFHEHTSAWNACVYGYKRWALLPPCAALTTRAHSSHWLSNGAGEGEGGGPPQGALEFVQGPGEVVFVPPHWTHAVLNLTDVVGVASEFAAHAYPPDLPPPRRKEAPP 129
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BLAST of jgi.p|Trimin1|176435 vs. uniprot
Match: UPI001951D8E7 (cupin-like domain-containing protein n=1 Tax=Archangium violaceum TaxID=83451 RepID=UPI001951D8E7)

HSP 1 Score: 95.1 bits (235), Expect = 2.230e-20
Identity = 50/103 (48.54%), Postives = 62/103 (60.19%), Query Frame = 1 
Query:   37 FYCGPPRSGAPFHEHTSAWNACVYGYKRWALLPPCAALTTRAHSSHWLSNGAGEGEGGGPPQGAL-EFVQGPGEVVFVPPHWTHAVLNLTDVVGVASEFAAHA 342
            FY GP  SG  FH+HT+AWNA ++GYKRW LLPP         + H  +    E     P    L E VQGPGEV+FVP HW HAVLN++D VG+A E   ++
Sbjct:  335 FYVGPAYSGVSFHQHTAAWNALLFGYKRWFLLPPFHFHGPTTIAMHEWARAHRE-----PFAAELHECVQGPGEVLFVPQHWYHAVLNVSDCVGIAVELGPNS 432
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BLAST of jgi.p|Trimin1|176435 vs. uniprot
Match: A0A8J2SGL8_9STRA (Hypothetical protein n=2 Tax=Pelagomonas calceolata TaxID=35677 RepID=A0A8J2SGL8_9STRA)

HSP 1 Score: 85.5 bits (210), Expect = 8.320e-17
Identity = 45/105 (42.86%), Postives = 56/105 (53.33%), Query Frame = 1 
Query:   46 GPPRSGAPFHEHTSAWNACVYGYKRWALLPPCAALTTRAHSSHWLSNGAGEGEGGGPPQGALEFVQGPGEVVFVPPHWTHAVLNLTDVVGVASEFAAHAYPPDLP 360
            G P SGAP H H +AWNACVYG K+W + PP  AL +      W  +   E E  G P   L  VQ  G+V  VP  W H V+NL + + VA+E     + P LP
Sbjct: 1071 GGPASGAPQHFHNTAWNACVYGAKKWLVYPPAYALMSNEQIRKWDEDDRSELEKDGQPS-PLTCVQRAGDVAVVPEMWGHGVVNLEETLAVATEVRMALFRPPLP 1174
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BLAST of jgi.p|Trimin1|176435 vs. uniprot
Match: A0A1X7UAN4_AMPQE (JmjC domain-containing protein n=1 Tax=Amphimedon queenslandica TaxID=400682 RepID=A0A1X7UAN4_AMPQE)

HSP 1 Score: 82.4 bits (202), Expect = 9.600e-16
Identity = 45/98 (45.92%), Postives = 58/98 (59.18%), Query Frame = 1 
Query:   37 FYCGPPRSGAPFHEHTSAWNACVYGYKRWALLPPCAALTTRAHSSHWLSNGAGEGEGGGPPQGALEFVQGPGEVVFVPPHWTHAVLNLTDVVGVASEF 330
            FY G   SGAP H H +AWN  VYG KRW + PP  A  ++ H   W  +   + E G   + A E VQ PG+++ +P  W HAV+NL + VGVASEF
Sbjct:  680 FYVGGTLSGAPPHFHRTAWNFLVYGKKRWFIFPPKDAFYSKEHVWDWWRDRY-QNENG---KRAWECVQYPGDLMVLPDMWGHAVINLQESVGVASEF 773
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BLAST of jgi.p|Trimin1|176435 vs. uniprot
Match: A0A2P6NVY1_9EUKA (JmjC domain-containing protein n=1 Tax=Planoprotostelium fungivorum TaxID=1890364 RepID=A0A2P6NVY1_9EUKA)

HSP 1 Score: 80.1 bits (196), Expect = 5.340e-15
Identity = 42/95 (44.21%), Postives = 52/95 (54.74%), Query Frame = 1 
Query:   22 AQSFTFYCGPPRSGAPFHEHTSAWNACVYGYKRWALLPPCAALTTRAHSSHWLSNGAGEGEGGGPPQGALEFVQGPGEVVFVPPHWTHAVLNLTD 306
            + S  FY G   SGAPFH H  A N  V G KRW + PP  AL ++ H   WL     +      P   LE +QGPG+V++VP  W+HAVLN  D
Sbjct:  335 SDSIHFYLGAKNSGAPFHIHADAANLVVRGSKRWLMYPPLQALYSQKHVYRWLQEDYKDMREEDKP---LECIQGPGDVIYVPFDWSHAVLNEED 426
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BLAST of jgi.p|Trimin1|176435 vs. uniprot
Match: F0YB89_AURAN (JmjC domain-containing protein n=1 Tax=Aureococcus anophagefferens TaxID=44056 RepID=F0YB89_AURAN)

HSP 1 Score: 79.3 bits (194), Expect = 1.200e-14
Identity = 40/105 (38.10%), Postives = 52/105 (49.52%), Query Frame = 1 
Query:   46 GPPRSGAPFHEHTSAWNACVYGYKRWALLPPCAALTTRAHSSHWLSNGAGEGEGGGPPQGALEFVQGPGEVVFVPPHWTHAVLNLTDVVGVASEFAAHAYPPDLP 360
            G   SGAP H H +AWNA VYG KRW + PP  +  +      W      E E G      LE +Q  G+V  +P  W H ++NL D + VA+E  A  +   LP
Sbjct: 1160 GVEGSGAPQHFHNTAWNALVYGAKRWLVFPPAYSFMSNMQIRQWDETEREENEKGVGQPPPLECIQRAGDVAIIPELWGHGIINLQDTIAVATEVKASLFRAPLP 1264
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BLAST of jgi.p|Trimin1|176435 vs. uniprot
Match: A0A7S4HGV3_9EUKA (Hypothetical protein n=1 Tax=Vannella sp. CB-2014 TaxID=1487602 RepID=A0A7S4HGV3_9EUKA)

HSP 1 Score: 73.9 bits (180), Expect = 3.010e-13
Identity = 37/99 (37.37%), Postives = 47/99 (47.47%), Query Frame = 1 
Query:   37 FYCGPPRSGAPFHEHTSAWNACVYGYKRWALLPPCAALTTRAHSSHWLSNGAGEGEGGGPPQGALEFVQGPGEVVFVPPHWTHAVLNLTDVVGVASEFA 333
            F  GPP SGAP H H  AWN  V+G K+W   PP   +++   SS W S                   Q PG+ V+VP  W+HA+ N      VA EF+
Sbjct:  178 FMWGPPGSGAPLHHHQDAWNGLVFGEKKWWFYPPSEMISSTKISSDWNS--------------PYYCTQSPGDFVYVPDSWSHAIYNSKFTSAVAIEFS 262
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BLAST of jgi.p|Trimin1|176435 vs. uniprot
Match: A0A7S2TYK5_9EUKA (Hypothetical protein n=1 Tax=Lotharella oceanica TaxID=641309 RepID=A0A7S2TYK5_9EUKA)

HSP 1 Score: 75.1 bits (183), Expect = 3.180e-13
Identity = 42/112 (37.50%), Postives = 58/112 (51.79%), Query Frame = 1 
Query:   46 GPPRSGAPFHEH---TSAWNACVYGYKRWALLPPCAA------------LTTRAHSSHWLSNGAGEGEGGGPPQGALEFVQGPGEVVFVPPHWTHAVLNLTDVVGVASEFAA 336
            GP RSG+ FH+    TSAWNACV G K+W LLPP               +T+    + W  N        G    ++EF+Q PG++VFVP  W H VLNLT+ + +   + +
Sbjct:  223 GPKRSGSTFHKDPNGTSAWNACVRGVKKWILLPPTVNPPGVHSSEDGVDVTSPVSLTEWFINFYHTLPSLGVE--SIEFIQRPGDMVFVPTQWWHCVLNLTECIAITQNYVS 332
[Close]
BLAST of jgi.p|Trimin1|176435 vs. uniprot
Match: A0A5A8DX65_CAFRO (JmjC domain-containing protein n=3 Tax=Cafeteria roenbergensis TaxID=33653 RepID=A0A5A8DX65_CAFRO)

HSP 1 Score: 74.3 bits (181), Expect = 5.980e-13
Identity = 46/119 (38.66%), Postives = 54/119 (45.38%), Query Frame = 1 
Query:   37 FYCGPPRSGAPFHEH---TSAWNACVYGYKRWALLPPCAALTTRAHSSHWLSNGAGEGE----------------GGGPPQGALEFVQGPGEVVFVPPHWTHAVLNLTDVVGVASEFAA 336
            F  GP RSG   H     TSAWNA V G KRW L PP A +         +     + E                GG    G ++FVQ PGE +FVP  W HAVLNL D V +   FA+
Sbjct:  199 FLMGPRRSGTCLHIDPLATSAWNALVRGRKRWVLFPPDADVPLVRGKVDGIVRSGEDDEAVDYFALHLPRILEKGGGAEAMGCIQFVQHPGETLFVPSGWWHAVLNLDDTVAITQNFAS 317
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BLAST of jgi.p|Trimin1|176435 vs. uniprot
Match: A0A2A9MC90_9APIC (Histone lysine demethylase JMJD6a n=1 Tax=Besnoitia besnoiti TaxID=94643 RepID=A0A2A9MC90_9APIC)

HSP 1 Score: 74.3 bits (181), Expect = 6.310e-13
Identity = 46/120 (38.33%), Postives = 55/120 (45.83%), Query Frame = 1 
Query:   37 FYCGPPRSGAPFHEH---TSAWNACVYGYKRWALLPPCAALTTRAHSSHWLSNGAGEG------------EGGGPPQGALEFVQGPGEVVFVPPHWTHAVLNLTDVVGVASEFAAHAYPP 351
            F  GP RSG   H     T+AWNA  +GYKRWAL PP  A        H L  G  +                 P     E +Q PGEV++VP  W HAVLNLTD V     F + ++ P
Sbjct:  252 FCIGPKRSGTTVHVDPLGTAAWNAVTHGYKRWALFPPSVARHI-VKGKHLLKRGEDDEAIMWFDFILPRIRENYPDVPIYECIQRPGEVIYVPGGWWHAVLNLTDCVACTQNFVSFSFLP 370
The following BLAST results are available for this feature:
BLAST of jgi.p|Trimin1|176435 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
A0A835Z9W9_9STRA1.580e-95100.00JmjC domain-containing protein n=1 Tax=Tribonema m... [more]
UPI001951D8E72.230e-2048.54cupin-like domain-containing protein n=1 Tax=Archa... [more]
A0A8J2SGL8_9STRA8.320e-1742.86Hypothetical protein n=2 Tax=Pelagomonas calceolat... [more]
A0A1X7UAN4_AMPQE9.600e-1645.92JmjC domain-containing protein n=1 Tax=Amphimedon ... [more]
A0A2P6NVY1_9EUKA5.340e-1544.21JmjC domain-containing protein n=1 Tax=Planoprotos... [more]
F0YB89_AURAN1.200e-1438.10JmjC domain-containing protein n=1 Tax=Aureococcus... [more]
A0A7S4HGV3_9EUKA3.010e-1337.37Hypothetical protein n=1 Tax=Vannella sp. CB-2014 ... [more]
A0A7S2TYK5_9EUKA3.180e-1337.50Hypothetical protein n=1 Tax=Lotharella oceanica T... [more]
A0A5A8DX65_CAFRO5.980e-1338.66JmjC domain-containing protein n=3 Tax=Cafeteria r... [more]
A0A2A9MC90_9APIC6.310e-1338.33Histone lysine demethylase JMJD6a n=1 Tax=Besnoiti... [more]

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
Contig_137contigContig_137:186113..186502 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Tribonema minus UTEX_B_31562021-06-17
Properties
Property NameValue
ProteomeIdTrimin1|176435|e_gw1.137.101.1
DescriptionCupin-like domain
COG categoryBT
Max annot lvl33154|Opisthokonta
EggNOG OGsKOG2130@1|root,KOG2130@2759|Eukaryota,39QJS@33154|Opisthokonta
Evalue4.96e-20
Seed ortholog946362.XP_004990482.1
Hectar predicted targeting categoryother localisation
TranscriptId176757
TrackFilteredModels1
ProteinId176435
Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesTypePosition
jgi.p|Trimin1|176435gene_13802Tribonema minus UTEX_B_3156 geneContig_137 186113..186502 -


The following exon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
exon_13802_1exon_13802_1Tribonema minus UTEX_B_3156 exonContig_137 186113..186502 -


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
CDS_13802CDS_13802Tribonema minus UTEX_B_3156 CDSContig_137 186113..186502 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
jgi.p|Trimin1|176435Trimin1|176435|e_gw1.137.101.1Tribonema minus UTEX_B_3156 polypeptideContig_137 186113..186502 -


Sequences
The following sequences are available for this feature:

spliced messenger RNA

>mRNA_13802 ID=mRNA_13802|Name=jgi.p|Trimin1|176435|organism=Tribonema minus UTEX_B_3156 |type=mRNA|length=390bp|location=Sequence derived from alignment at Contig_137:186113..186502- (Tribonema minus UTEX_B_3156 )|Notes=Excludes all bases but those of type(s): exon.  
ATGACGCCCTTCCTAGACGCCGCGCAGAGCTTCACCTTCTACTGCGGGCC
GCCGCGCAGCGGCGCGCCGTTCCACGAGCACACGAGCGCGTGGAACGCGT
GCGTGTACGGCTACAAGCGCTGGGCGCTGCTGCCGCCGTGCGCGGCGCTG
ACGACGCGCGCGCACAGCTCGCACTGGCTGAGCAATGGGGCAGGGGAAGG
GGAAGGGGGGGGCCCTCCCCAGGGGGCGCTGGAGTTTGTGCAGGGGCCCG
GGGAGGTGGTCTTTGTGCCGCCGCACTGGACGCACGCCGTGTTGAACTTG
ACGGATGTTGTAGGCGTGGCGAGCGAGTTTGCGGCGCACGCGTACCCGCC
GGATCTGCCGCCGCCGCGGCGGAAAGAAGCGCCGCCGTGA
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protein sequence of jgi.p|Trimin1|176435

>Trimin1|176435|e_gw1.137.101.1 ID=Trimin1|176435|e_gw1.137.101.1|Name=jgi.p|Trimin1|176435|organism=Tribonema minus UTEX_B_3156 |type=polypeptide|length=130bp
MTPFLDAAQSFTFYCGPPRSGAPFHEHTSAWNACVYGYKRWALLPPCAAL
TTRAHSSHWLSNGAGEGEGGGPPQGALEFVQGPGEVVFVPPHWTHAVLNL
TDVVGVASEFAAHAYPPDLPPPRRKEAPP*
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mRNA from alignment at Contig_137:186113..186502-

Legend: exonpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_13802 ID=mRNA_13802|Name=jgi.p|Trimin1|176435|organism=Tribonema minus UTEX_B_3156 |type=mRNA|length=390bp|location=Sequence derived from alignment at Contig_137:186113..186502- (Tribonema minus UTEX_B_3156 )
ATGACGCCCTTCCTAGACGCCGCGCAGAGCTTCACCTTCTACTGCGGGCC
GCCGCGCAGCGGCGCGCCGTTCCACGAGCACACGAGCGCGTGGAACGCGT
GCGTGTACGGCTACAAGCGCTGGGCGCTGCTGCCGCCGTGCGCGGCGCTG
ACGACGCGCGCGCACAGCTCGCACTGGCTGAGCAATGGGGCAGGGGAAGG
GGAAGGGGGGGGCCCTCCCCAGGGGGCGCTGGAGTTTGTGCAGGGGCCCG
GGGAGGTGGTCTTTGTGCCGCCGCACTGGACGCACGCCGTGTTGAACTTG
ACGGATGTTGTAGGCGTGGCGAGCGAGTTTGCGGCGCACGCGTACCCGCC
GGATCTGCCGCCGCCGCGGCGGAAAGAAGCGCCGCCGTGA
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Coding sequence (CDS) from alignment at Contig_137:186113..186502-

>mRNA_13802 ID=mRNA_13802|Name=jgi.p|Trimin1|176435|organism=Tribonema minus UTEX_B_3156 |type=CDS|length=390bp|location=Sequence derived from alignment at Contig_137:186113..186502- (Tribonema minus UTEX_B_3156 )
ATGACGCCCTTCCTAGACGCCGCGCAGAGCTTCACCTTCTACTGCGGGCC
GCCGCGCAGCGGCGCGCCGTTCCACGAGCACACGAGCGCGTGGAACGCGT
GCGTGTACGGCTACAAGCGCTGGGCGCTGCTGCCGCCGTGCGCGGCGCTG
ACGACGCGCGCGCACAGCTCGCACTGGCTGAGCAATGGGGCAGGGGAAGG
GGAAGGGGGGGGCCCTCCCCAGGGGGCGCTGGAGTTTGTGCAGGGGCCCG
GGGAGGTGGTCTTTGTGCCGCCGCACTGGACGCACGCCGTGTTGAACTTG
ACGGATGTTGTAGGCGTGGCGAGCGAGTTTGCGGCGCACGCGTACCCGCC
GGATCTGCCGCCGCCGCGGCGGAAAGAAGCGCCGCCGTGA
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