mRNA_13772 (mRNA) Tribonema minus UTEX_B_3156

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
Namejgi.p|Trimin1|67786
Unique NamemRNA_13772
TypemRNA
OrganismTribonema minus UTEX_B_3156 (Tribonema minus UTEX_B_3156 )
Homology
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BLAST of jgi.p|Trimin1|67786 vs. uniprot
Match: A0A836CBX6_9STRA (Uncharacterized protein n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A836CBX6_9STRA)

HSP 1 Score: 232 bits (591), Expect = 5.970e-76
Identity = 135/135 (100.00%), Postives = 135/135 (100.00%), Query Frame = 3 
Query:   69 MLVRDAKDRELLFEVPKVPAYRAIREGMHCEVVVVSREPDFDHLTGVTEAYVPEAGVFVGHHPLLRRSAFLQLLARRRKRRSHAAAPATQASGMLDGNDSSSXXXSXXXXXXXXXXQAVLNSKVPRHTRERTQHA 473
            MLVRDAKDRELLFEVPKVPAYRAIREGMHCEVVVVSREPDFDHLTGVTEAYVPEAGVFVGHHPLLRRSAFLQLLARRRKRRSHAAAPATQASGMLDGNDSSSXXXSXXXXXXXXXXQAVLNSKVPRHTRERTQHA
Sbjct:    1 MLVRDAKDRELLFEVPKVPAYRAIREGMHCEVVVVSREPDFDHLTGVTEAYVPEAGVFVGHHPLLRRSAFLQLLARRRKRRSHAAAPATQASGMLDGNDSSSXXXSXXXXXXXXXXQAVLNSKVPRHTRERTQHA 135
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BLAST of jgi.p|Trimin1|67786 vs. uniprot
Match: A0A2T1LSB0_9CHRO (Phosphate ABC transporter permease n=2 Tax=Chroococcales TaxID=1118 RepID=A0A2T1LSB0_9CHRO)

HSP 1 Score: 57.8 bits (138), Expect = 5.890e-7
Identity = 24/73 (32.88%), Postives = 47/73 (64.38%), Query Frame = 3 
Query:   69 MLVRDAKDRELLFEVPKVPAYRAIREGMHCEVVVVSREPDFDHLTGVTEAYVPEAGVFVGHHPLLRRSAFLQL 287
            +LV D    ++  + P    Y+ IR G+  E++V+S++PD + ++ +T+ Y+P+  ++VG +P LRR  F+Q+
Sbjct:  135 LLVGDQSGFKVTVQAPLRRIYKGIRPGVVAELLVLSKQPDLETISKITDVYLPQQNLWVGEYPYLRRDVFMQV 207
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BLAST of jgi.p|Trimin1|67786 vs. uniprot
Match: A0A5B8NL37_9CHRO (Phosphate ABC transporter permease n=1 Tax=Euhalothece natronophila Z-M001 TaxID=522448 RepID=A0A5B8NL37_9CHRO)

HSP 1 Score: 57.0 bits (136), Expect = 1.060e-6
Identity = 28/82 (34.15%), Postives = 51/82 (62.20%), Query Frame = 3 
Query:   75 VRDAKDRELLFEVPKVPAYRAIREGMHCEVVVVSREPDFDHLTGVTEAYVPEAGVFVGHHPLLRRSAFLQ----LLARRRKR 308
            V D    E+  + P +  +R I+ G   E++ +S++PD + ++ VT+AY+P+  ++V ++P+LRR  F++    L  RRRKR
Sbjct:  136 VGDKNGFEIQIQAPLLRLHRNIKPGQVVELLALSKDPDLERISKVTDAYIPQLDIWVSNYPVLRRDIFVEVSEELSGRRRKR 217
The following BLAST results are available for this feature:
BLAST of jgi.p|Trimin1|67786 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 3
Match NameE-valueIdentityDescription
A0A836CBX6_9STRA5.970e-76100.00Uncharacterized protein n=1 Tax=Tribonema minus Ta... [more]
A0A2T1LSB0_9CHRO5.890e-732.88Phosphate ABC transporter permease n=2 Tax=Chrooco... [more]
A0A5B8NL37_9CHRO1.060e-634.15Phosphate ABC transporter permease n=1 Tax=Euhalot... [more]
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
Contig_43contigContig_43:829518..832710 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Tribonema minus UTEX_B_31562021-06-17
Properties
Property NameValue
ProteomeIdTrimin1|67786|CE67785_14
Max annot lvl2759|Eukaryota
EggNOG OGs2E2W9@1|root,2SA2H@2759|Eukaryota
Evalue3.92e-06
Seed ortholog2880.D8LTW7
Hectar predicted targeting categoryother localisation
TranscriptId68108
TrackFilteredModels1
ProteinId67786
Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesTypePosition
jgi.p|Trimin1|67786gene_13772Tribonema minus UTEX_B_3156 geneContig_43 829518..832710 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
jgi.p|Trimin1|67786Trimin1|67786|CE67785_14Tribonema minus UTEX_B_3156 polypeptideContig_43 829561..832642 -


The following exon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
exon_13772_4exon_13772_4Tribonema minus UTEX_B_3156 exonContig_43 829518..829768 -
exon_13772_3exon_13772_3Tribonema minus UTEX_B_3156 exonContig_43 830648..830754 -
exon_13772_2exon_13772_2Tribonema minus UTEX_B_3156 exonContig_43 831543..831593 -
exon_13772_1exon_13772_1Tribonema minus UTEX_B_3156 exonContig_43 832601..832710 -


The following three_prime_UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
UTR3_13772UTR3_13772Tribonema minus UTEX_B_3156 three_prime_UTRContig_43 829518..829560 -


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
CDS_13772CDS_13772Tribonema minus UTEX_B_3156 CDSContig_43 832601..832642 -


The following five_prime_UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
UTR5_13772UTR5_13772Tribonema minus UTEX_B_3156 five_prime_UTRContig_43 832643..832710 -


Sequences
The following sequences are available for this feature:

spliced messenger RNA

>mRNA_13772 ID=mRNA_13772|Name=jgi.p|Trimin1|67786|organism=Tribonema minus UTEX_B_3156 |type=mRNA|length=519bp|location=Sequence derived from alignment at Contig_43:829518..832710- (Tribonema minus UTEX_B_3156 )|Notes=Excludes all bases but those of type(s): exon.  
GCGGTAAGGTGGTGCGCACGCGCGAAGTTCTGGCGCCCAATGCGCTCAGC
CATCACGTGCACTTTGAGATGCTCGTGCGCGATGCCAAGGACAGGGAGCT
GCTGTTTGAGGTGCCCAAGGTCCCCGCCTACCGCGCCATACGGGAAGGCA
TGCACTGCGAGGTTGTGGTCGTCAGCCGAGAACCCGACTTTGACCACCTG
ACAGGAGTGACAGAGGCCTATGTTCCGGAAGCGGGCGTGTTTGTTGGGCA
TCACCCTTTACTACGCAGGTCGGCATTCCTTCAGCTACTGGCACGGCGAC
GCAAGCGCCGAAGCCACGCAGCTGCCCCTGCCACTCAGGCGTCGGGTATG
CTCGACGGCAATGACAGCAGCAGCGGCGGCGGCAGCGGCAGCAGCGGCAG
CAGTGGCAGCAGCGGCCAGGCAGTGCTCAACAGCAAAGTGCCGAGGCACA
CGCGTGAACGCACGCAGCACGCGTGATGCATCTTACACACGCGACCACGC
CTGCAGTCGCAAGTTTCCC
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protein sequence of jgi.p|Trimin1|67786

>Trimin1|67786|CE67785_14 ID=Trimin1|67786|CE67785_14|Name=jgi.p|Trimin1|67786|organism=Tribonema minus UTEX_B_3156 |type=polypeptide|length=136bp
MLVRDAKDRELLFEVPKVPAYRAIREGMHCEVVVVSREPDFDHLTGVTEA
YVPEAGVFVGHHPLLRRSAFLQLLARRRKRRSHAAAPATQASGMLDGNDS
SSGGGSGSSGSSGSSGQAVLNSKVPRHTRERTQHA*
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mRNA from alignment at Contig_43:829518..832710-

Legend: exonfive_prime_UTRpolypeptideCDSthree_prime_UTR
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_13772 ID=mRNA_13772|Name=jgi.p|Trimin1|67786|organism=Tribonema minus UTEX_B_3156 |type=mRNA|length=3193bp|location=Sequence derived from alignment at Contig_43:829518..832710- (Tribonema minus UTEX_B_3156 )
GCGGTAAGGTGGTGCGCACGCGCGAAGTTCTGGCGCCCAATGCGCTCAGC
CATCACGTGCACTTTGAGATGCTCGTGCGCGATGCCAAGGACAGGGAGCT
GCTGTTTGAGGTGAGCATCTTAACTTCAATGTCAACTGTCGCGCACAAGT
CCAAGTCATGACGGACTTTCGGTACCACAACTGTGCTAGCTTCCTTTTGT
ACTTCACATTCAACTTCAATCAGCCATCACGTGCACTTTGAGATGCTCGT
GCGCGATGCCAAGGACAGGGAGCTGCTGTTTGAGGTGAGCATCACAACCT
CAATGTGTCAACTTTCATACAACAAGTTCAAGTAATGAAAGACCTTCGAC
ACCACAACTGTGCTAGCTTCCATTTTTACTTTACGTTCAACTTCAATCAG
GCATCACGTCTACCTTGAGATGCCGGTGCGTGATGCCAAAGACAGGGAGC
TGCTGTCTGAGGCGAGCATCCTAACTTCAATGTCAATTGCACCCTGTCCG
TGCCGCCATGTACACACACGTCATTGATGTATAGCCCTGTACATTGGATG
CCCTCACGGATATGTCAAACGTTTCGGCAATTTGGTTACAAAATTGGGGC
CCAAAACCAGGGGAACCAGCAAGCCATGCACATGCTGCTAGATTACACGA
GGCCAAGTCTTGTAGACACGGCACACGGGACACGGCACCACCAGTCAGTC
AGCCGGCACTGTCGCGTTTCTGCTTAACTTGATCAAAATTTTGCGCCGTT
GCTTCACGTACGTGTGCTTGCACCCTGTTTGTGCTGCTATGTATACACGC
ATCATTGATGTGAAGCCCTACGCATTGGATGTCCCGATGAAGTGATGCTG
TTGTGATGCCTTCTGCTGTACTTCGAAGTGTAGTTTTACTCTATACTTTG
GATGCTCTCGTTACGCTGTACTCCAGGCTGTTCCCGCATAGACATGCAAT
GCCCTCGTTAATGCTGTTGTGGCGTATGTATGCACGTTCCCTATTACCGC
CGCTGTATACATTGACAGTCAATTTACAACGATGCACGTCGGATGTGGTG
GTTGCGTCTTTGCTGTACTGTAGGATGTCCTTATTAATGCAGTTGTGGCG
TCTTTGCTGTACCCTAGGTGCCCAAGGTCCCCGCCTACCGCGCCATACGG
GAAGGCATGCACTGCGAGGTAAGTCGAAGTATGATGTTGAGGTATGATGT
TGAAGTAGCTATGGTTACAACATGGAGTAGTTCCAGAACGTGTTGAAGTT
TCCGCTTGTTTTGTCGTGCTTCGCTGTCTTTGCAGCCGCAGAACTCGGAG
GATATGACACTTCTTCAATCAGGCTGTCAGATGCATGGTAAACTTCAATT
GAAGTAACCGCGCTGGTGCAAGCACTTCGCCGCATGATGCTGCGCTTTCA
CTCATCCAGATGCAGTTTGAGCAAAATGGTCACGGAAAGCTGCGGCCACG
CGTGCTCTCTTCATGAATCTTTCACTCGTTCATTCATGCATCCATTTATT
CATTTTCGTGGCTTGCTGTGAACTTTAGTGAGTCATGTGCTCATTCAACC
AGGTCGCGGCTGCCATGAAACTGCAGATCGTAGTCGTCACTCAGGTGCTT
GAAAATGGTGTGTTCATGAAAATGAAGTATTTATGAACCATGATTCATTG
ATTCATGTGCATGGCCGCCAAGAACTGCAGGTTGTGGTCATGAGCCGAGA
ACTCAACATTGTCCACCTGACAGGCTTGATGGAGGCGTACGTCTGTGAAC
CTGACGTGTTCATGAAACATGAATTCATTCATTCATGCGCGTGGCCACTA
TGAACTGCAGGTCGTGGTGGTCGGCCGAGAACCCGACTTTGACCACCAAA
CAGAGGTGACTAAAGCGTACGTTTCTAAAGCTGGTGTGTTCATGAAAATG
ACGTGTGCATGAAACATGAATCATTCATTCATGCGTGGGGCCGCTATGAG
ACGCAGGTTGTGGTCGTCAGCCGAGAACCCGACTTTGACCACCTGACAGG
AGTGACAGAGGCCTATGTTCCGGAAGCGGGCGTGTTTGTTGGGCATCACC
CTTTACTACGCAGGTATGTAACGCATCTCAGGATTAGGGTAAGAGCAATA
TTGGCTGTTTCGCAGGTGGCGCATCTGATGTACAGAGATCAGCATCTGAT
GTTGAAGTAGATCAGCATCTGATGTTGAAGTACACAACTAGCGTCAGGAA
CCCCAACCCTGGCCCTATTGTCGCTTAATCACCCATTGCTACGCGGGGAT
GTAACGCATCTTAGGGTAAGGGTAACGGCACAATCTCATGTAAGGGCATG
TACAAAGCTAATATGTACTGCTTGTAGCGTGTTCGTTGGGCACCAGCGTT
TGCTACGCAGGTATGTAATGCATCTTAGGGTACAGGGTTAGGGCACTCTC
TGATGTACAAAGCTCCTATATATACTGCTTGTACATAGCACGTTGCTATG
CGTCACCCTTTGCTACGGGGGTCATGCATCTTAGGGTAAGGTTCAGGCAC
AAATGTGGTGCATCTGATGTACAGTACTTAGGGTAGGTGCGGGTTAGGAT
TAGGGTTTACCCTAGTCCTAACCCTAATTCTGCGCGGTGATCCCCACGTC
TTCATGCTCTCGTCTCAAGCACTTGACTCGTCCCTCGGCGCTGTTGTTGT
ACTAGTCAAGGGTTTCTGTTCCTCTAGCGGAAGTAAATGAACTACTAGAG
CACCAGCTCTCTATTTCGCTGTCAGCATCCCCTGACCTTCTGAATTGGCA
ACTCTCAGTTGTCACCGCATGGCCAGGATCCAGCTGTTGTGAAGCACCCA
ACAAAAATGTCATCGGTTCCAGCCGGCACCCTACATATATACCTACACTG
CGCTGTCACACTTTAACCCTAATTTTAATCTGCCTAACTCTAATCTGCTT
CACACCCTCCGTAAATTTAACCCTTGCCATAATCCTGAGCAGGTCGGCAT
TCCTTCAGCTACTGGCACGGCGACGCAAGCGCCGAAGCCACGCAGCTGCC
CCTGCCACTCAGGCGTCGGGTATGCTCGACGGCAATGACAGCAGCAGCGG
CGGCGGCAGCGGCAGCAGCGGCAGCAGTGGCAGCAGCGGCCAGGCAGTGC
TCAACAGCAAAGTGCCGAGGCACACGCGTGAACGCACGCAGCACGCGTGA
TGCATCTTACACACGCGACCACGCCTGCAGTCGCAAGTTTCCC
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Coding sequence (CDS) from alignment at Contig_43:829518..832710-

>mRNA_13772 ID=mRNA_13772|Name=jgi.p|Trimin1|67786|organism=Tribonema minus UTEX_B_3156 |type=CDS|length=408bp|location=Sequence derived from alignment at Contig_43:829518..832710- (Tribonema minus UTEX_B_3156 )
ATGCTCGTGCGCGATGCCAAGGACAGGGAGCTGCTGTTTGAGGTGCCCAA
GGTCCCCGCCTACCGCGCCATACGGGAAGGCATGCACTGCGAGGTTGTGG
TCGTCAGCCGAGAACCCGACTTTGACCACCTGACAGGAGTGACAGAGGCC
TATGTTCCGGAAGCGGGCGTGTTTGTTGGGCATCACCCTTTACTACGCAG
GTCGGCATTCCTTCAGCTACTGGCACGGCGACGCAAGCGCCGAAGCCACG
CAGCTGCCCCTGCCACTCAGGCGTCGGGTATGCTCGACGGCAATGACAGC
AGCAGCGGCGGCGGCAGCGGCAGCAGCGGCAGCAGTGGCAGCAGCGGCCA
GGCAGTGCTCAACAGCAAAGTGCCGAGGCACACGCGTGAACGCACGCAGC
ACGCGTGA
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