mRNA_13759 (mRNA) Tribonema minus UTEX_B_3156

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
Namejgi.p|Trimin1|166310
Unique NamemRNA_13759
TypemRNA
OrganismTribonema minus UTEX_B_3156 (Tribonema minus UTEX_B_3156 )
Homology
BLAST of jgi.p|Trimin1|166310 vs. uniprot
Match: A0A835YU17_9STRA (USP domain-containing protein n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A835YU17_9STRA)

HSP 1 Score: 216 bits (549), Expect = 3.960e-71
Identity = 105/105 (100.00%), Postives = 105/105 (100.00%), Query Frame = 1
Query:    1 GGGSDGESGGSSDLLYDLYSVVNHMGGLSGGHYTACCLSTPCSPGGIEDAASVGYPQDSRSPPWLYFDDEFVEELPPARVVSEAAYVLFYKRRRVTGANLVNTTV 315
            GGGSDGESGGSSDLLYDLYSVVNHMGGLSGGHYTACCLSTPCSPGGIEDAASVGYPQDSRSPPWLYFDDEFVEELPPARVVSEAAYVLFYKRRRVTGANLVNTTV
Sbjct:    1 GGGSDGESGGSSDLLYDLYSVVNHMGGLSGGHYTACCLSTPCSPGGIEDAASVGYPQDSRSPPWLYFDDEFVEELPPARVVSEAAYVLFYKRRRVTGANLVNTTV 105          
BLAST of jgi.p|Trimin1|166310 vs. uniprot
Match: A0A7S3XNJ2_HETAK (Hypothetical protein n=1 Tax=Heterosigma akashiwo TaxID=2829 RepID=A0A7S3XNJ2_HETAK)

HSP 1 Score: 120 bits (302), Expect = 1.260e-29
Identity = 54/100 (54.00%), Postives = 77/100 (77.00%), Query Frame = 1
Query:   16 GESGGSSDLLYDLYSVVNHMGGLSGGHYTACCLSTPCSPGGIEDAASVGYPQDSRSPPWLYFDDEFVEELPPARVVSEAAYVLFYKRRRVTGANLVNTTV 315
            G +GG  DL+YDLY VVNH+GG++GGHYTA C S+ C+ GG+E+  + G    +   PWL+FDDEFVEE+   ++V+EAAY+LFY++RR+T +N++N TV
Sbjct:  689 GRAGGPGDLVYDLYGVVNHVGGMTGGHYTAFCRSSSCTRGGVEEVGTGG----AGGGPWLHFDDEFVEEISQDKIVTEAAYLLFYRKRRITPSNVINMTV 784          
BLAST of jgi.p|Trimin1|166310 vs. uniprot
Match: D7FKW9_ECTSI (Similar to Ubiquitin carboxyl-terminal hydrolase 15 (Ubiquitin thiolesterase 15) (Ubiquitin-specific processing protease 15) (Deubiquitinating enzyme 15) (Unph-2) (Unph4) isoform 11 n=2 Tax=Ectocarpus TaxID=2879 RepID=D7FKW9_ECTSI)

HSP 1 Score: 120 bits (301), Expect = 1.800e-29
Identity = 54/97 (55.67%), Postives = 73/97 (75.26%), Query Frame = 1
Query:   25 GGSSDLLYDLYSVVNHMGGLSGGHYTACCLSTPCSPGGIEDAASVGYPQDSRSPPWLYFDDEFVEELPPARVVSEAAYVLFYKRRRVTGANLVNTTV 315
            GG + ++YDL+ VVNHMGG++GGHYTA C S+PCS  G+E+    G        PWL FDDEFVEE+ P ++VS+AAYVLFY+RRR+T +N++N T+
Sbjct: 1881 GGQAGMVYDLFGVVNHMGGMTGGHYTAYCRSSPCSKDGVEEVTGWGLEH-----PWLNFDDEFVEEMAPDKIVSDAAYVLFYRRRRLTPSNVINMTI 1972          
BLAST of jgi.p|Trimin1|166310 vs. uniprot
Match: K0TET2_THAOC (USP domain-containing protein n=1 Tax=Thalassiosira oceanica TaxID=159749 RepID=K0TET2_THAOC)

HSP 1 Score: 94.0 bits (232), Expect = 3.640e-20
Identity = 55/127 (43.31%), Postives = 64/127 (50.39%), Query Frame = 1
Query:   37 DLLYDLYSVVNHMGGLSGGHYTACCLSTPCSPGGIEDAA--------------------SVGYPQDSRS-------------------PPWLYFDDEFVEELPPARVVSEAAYVLFYKRRRVTGANL 300
            D +YDL  VVNH GG++GGHY A C +T CSP G ED A                    S G+ +  RS                   P WL FDDE VE LPP  VVSE AYVLFYKRRR+  +N+
Sbjct:  957 DFVYDLVGVVNHYGGMTGGHYVATCKATKCSPNGNEDFAYDFSGSGLAETDSLPEVEPSSGGWAKIGRSKEKDSLSNGASKAVSESSEPLWLQFDDELVEPLPPRNVVSETAYVLFYKRRRMRPSNI 1083          
BLAST of jgi.p|Trimin1|166310 vs. uniprot
Match: A0A7S3JRX2_9STRA (Hypothetical protein n=2 Tax=Aureoumbra lagunensis TaxID=44058 RepID=A0A7S3JRX2_9STRA)

HSP 1 Score: 93.2 bits (230), Expect = 6.890e-20
Identity = 42/92 (45.65%), Postives = 65/92 (70.65%), Query Frame = 1
Query:   40 LLYDLYSVVNHMGGLSGGHYTACCLSTPCSPGGIEDAASVGYPQDSRSPP---WLYFDDEFVEELPPARVVSEAAYVLFYKRRRVTGANLVN 306
            + YDL+ V+NH+GG++GGHYT+   + PC+  G+E+ AS  +P +        WL+ DD+ VEE+ P ++V+EAAYVLFY+RR +T A ++N
Sbjct: 1600 MTYDLFGVINHLGGMTGGHYTSYVRAVPCTRDGVEEVAS-SFPTEEDGLVDYRWLHVDDDLVEEVGPQQIVTEAAYVLFYRRRSLTPATVIN 1690          
BLAST of jgi.p|Trimin1|166310 vs. uniprot
Match: A0A7S4QV73_9STRA (Hypothetical protein n=7 Tax=Ditylum brightwellii TaxID=49249 RepID=A0A7S4QV73_9STRA)

HSP 1 Score: 91.3 bits (225), Expect = 3.290e-19
Identity = 50/129 (38.76%), Postives = 63/129 (48.84%), Query Frame = 1
Query:   43 LYDLYSVVNHMGGLSGGHYTACCLSTPCSPGGIED-------------------------------------------AASVGYPQDSRSPPWLYFDDEFVEELPPARVVSEAAYVLFYKRRRVTGANL 300
            +YDLY VVNH GG++GGHY A C +T CSP G E+                                           AAS     +S  P WL FDD+ VE +PP  VVSE AYVLFY+RRR++ +N+
Sbjct: 2153 VYDLYGVVNHYGGMTGGHYVATCKATVCSPDGSEELGYNFNGTCNGESGAGVETVQSGWRLGRNKDKESTTSQAKLIAAASARAAAESPEPLWLQFDDDLVEPIPPKNVVSEMAYVLFYRRRRISSSNI 2281          
BLAST of jgi.p|Trimin1|166310 vs. uniprot
Match: A0A1E7FCK2_9STRA (Ubiquitin carboxyl-terminal hydrolase n=1 Tax=Fragilariopsis cylindrus CCMP1102 TaxID=635003 RepID=A0A1E7FCK2_9STRA)

HSP 1 Score: 89.7 bits (221), Expect = 7.920e-19
Identity = 43/86 (50.00%), Postives = 57/86 (66.28%), Query Frame = 1
Query:   43 LYDLYSVVNHMGGLSGGHYTACCLSTPCSPGGIEDAASVGYPQDSRSPPWLYFDDEFVEELPPARVVSEAAYVLFYKRRRVTGANL 300
            +YDL  V+NH GG++GGHY A C +TP        +A     ++S  P WL FDDE VE + P  V+SE+AYVLFY+RRR+T AN+
Sbjct:  353 VYDLIGVLNHYGGMTGGHYVATCKATP--------SAMAKAQRESAEPLWLQFDDEVVEPIAPKSVISESAYVLFYRRRRLTPANV 430          
BLAST of jgi.p|Trimin1|166310 vs. uniprot
Match: A0A6G0XC45_9STRA (Uncharacterized protein n=1 Tax=Aphanomyces euteiches TaxID=100861 RepID=A0A6G0XC45_9STRA)

HSP 1 Score: 87.8 bits (216), Expect = 5.250e-18
Identity = 48/90 (53.33%), Postives = 60/90 (66.67%), Query Frame = 1
Query:   43 LYDLYSVVNHMGGLSGGHYTACCLSTPCSPGGIEDAASVGYPQD-SRSPPWLYFDDEFVEELPPARVVSEAAYVLFYKRRRVTGANLVNT 309
            LYDLY+VVNH GGLS GHYTA C      P G+       +PQ  + S  WL FDDE V E+PPA VV+ AAYVLFY+RR ++G +++ T
Sbjct:  956 LYDLYAVVNHTGGLSEGHYTAYCRYDINPPKGL-------HPQVVAPSHLWLNFDDEIVSEIPPANVVTNAAYVLFYRRRVLSGNSILRT 1038          
BLAST of jgi.p|Trimin1|166310 vs. uniprot
Match: A0A8J2SJY2_9STRA (Hypothetical protein n=1 Tax=Pelagomonas calceolata TaxID=35677 RepID=A0A8J2SJY2_9STRA)

HSP 1 Score: 87.8 bits (216), Expect = 5.280e-18
Identity = 43/90 (47.78%), Postives = 60/90 (66.67%), Query Frame = 1
Query:   43 LYDLYSVVNHMGGLSGGHYTACCLSTPCSPGGIEDAASVGYPQDSRSPPWLYFDDEFVEELPPARVVSEAAYVLFYKRRRVTGANLVNTT 312
            +YDL+ V+NH+G LSGGHYTA    +PCS  G E+ AS+ + +  R   W + DD+ VE   P  VV++ AYVLFY+RRR++G  +V  T
Sbjct: 1064 VYDLFGVINHLGSLSGGHYTAHVKVSPCSSFG-EEEASIAFEESER---WFHVDDDLVEAAKPEDVVTDGAYVLFYRRRRLSGRLVVGHT 1149          
BLAST of jgi.p|Trimin1|166310 vs. uniprot
Match: A0A7R9WCH7_9STRA (Hypothetical protein n=1 Tax=Pseudictyota dubia TaxID=2749911 RepID=A0A7R9WCH7_9STRA)

HSP 1 Score: 83.6 bits (205), Expect = 5.350e-18
Identity = 48/128 (37.50%), Postives = 62/128 (48.44%), Query Frame = 1
Query:   43 LYDLYSVVNHMGGLSGGHYTACCLSTPCSPGGIEDAA----------------------SVGYPQD--------------------SRSPPWLYFDDEFVEELPPARVVSEAAYVLFYKRRRVTGANL 300
            +YDL  VVNH GG++GGHY A C +T CS  G E+ A                       +G  +D                    S  P WL FDD+ VE +PP  VVSE AYVLFY+RRR++ +N+
Sbjct:   39 VYDLIGVVNHYGGMTGGHYVATCKATACSADGSEEVAYNFNGAGISAFDAEEETVQTGWRLGRSKDKDSTTAQTKAAMAAARSVAESAEPLWLQFDDDLVEPIPPKNVVSEMAYVLFYRRRRISPSNI 166          
The following BLAST results are available for this feature:
BLAST of jgi.p|Trimin1|166310 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
A0A835YU17_9STRA3.960e-71100.00USP domain-containing protein n=1 Tax=Tribonema mi... [more]
A0A7S3XNJ2_HETAK1.260e-2954.00Hypothetical protein n=1 Tax=Heterosigma akashiwo ... [more]
D7FKW9_ECTSI1.800e-2955.67Similar to Ubiquitin carboxyl-terminal hydrolase 1... [more]
K0TET2_THAOC3.640e-2043.31USP domain-containing protein n=1 Tax=Thalassiosir... [more]
A0A7S3JRX2_9STRA6.890e-2045.65Hypothetical protein n=2 Tax=Aureoumbra lagunensis... [more]
A0A7S4QV73_9STRA3.290e-1938.76Hypothetical protein n=7 Tax=Ditylum brightwellii ... [more]
A0A1E7FCK2_9STRA7.920e-1950.00Ubiquitin carboxyl-terminal hydrolase n=1 Tax=Frag... [more]
A0A6G0XC45_9STRA5.250e-1853.33Uncharacterized protein n=1 Tax=Aphanomyces euteic... [more]
A0A8J2SJY2_9STRA5.280e-1847.78Hypothetical protein n=1 Tax=Pelagomonas calceolat... [more]
A0A7R9WCH7_9STRA5.350e-1837.50Hypothetical protein n=1 Tax=Pseudictyota dubia Ta... [more]

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
Contig_43contigContig_43:649613..650753 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Tribonema minus UTEX_B_31562021-06-17
Properties
Property NameValue
ProteomeIdTrimin1|166310|e_gw1.43.12.1
Descriptionubiquitinyl hydrolase activity
COG categoryO
Max annot lvl2759|Eukaryota
EggNOG OGsCOG5560@1|root,KOG1870@2759|Eukaryota
Evalue2.96e-30
Seed ortholog2880.D7FKW9
Hectar predicted targeting categoryother localisation
TranscriptId166632
TrackFilteredModels1
ProteinId166310
Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesTypePosition
jgi.p|Trimin1|166310gene_13759Tribonema minus UTEX_B_3156 geneContig_43 649613..650753 +


The following exon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
exon_13759_1exon_13759_1Tribonema minus UTEX_B_3156 exonContig_43 649613..649715 +
exon_13759_2exon_13759_2Tribonema minus UTEX_B_3156 exonContig_43 650539..650753 +


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
CDS_13759CDS_13759Tribonema minus UTEX_B_3156 CDSContig_43 649613..649715 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
jgi.p|Trimin1|166310Trimin1|166310|e_gw1.43.12.1Tribonema minus UTEX_B_3156 polypeptideContig_43 649613..650753 +


Sequences
The following sequences are available for this feature:

spliced messenger RNA

>mRNA_13759 ID=mRNA_13759|Name=jgi.p|Trimin1|166310|organism=Tribonema minus UTEX_B_3156 |type=mRNA|length=318bp|location=Sequence derived from alignment at Contig_43:649613..650753+ (Tribonema minus UTEX_B_3156 )|Notes=Excludes all bases but those of type(s): exon.  
GGTGGCGGGAGCGACGGCGAAAGTGGCGGTAGCTCCGACCTTCTCTACGA
CCTCTACAGCGTGGTCAACCATATGGGCGGTCTTAGTGGGGGCCACTATA
CAGCGTGCTGCCTCTCCACTCCCTGCTCCCCGGGGGGCATAGAAGACGCA
GCCTCCGTGGGCTATCCGCAGGACTCGCGCAGCCCCCCGTGGCTCTACTT
CGACGACGAATTCGTGGAGGAATTACCCCCTGCGCGTGTGGTCAGCGAAG
CTGCGTACGTCCTCTTCTACAAGCGGCGGCGCGTCACTGGCGCCAACCTG
GTCAACACCACCGTATGA
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protein sequence of jgi.p|Trimin1|166310

>Trimin1|166310|e_gw1.43.12.1 ID=Trimin1|166310|e_gw1.43.12.1|Name=jgi.p|Trimin1|166310|organism=Tribonema minus UTEX_B_3156 |type=polypeptide|length=106bp
GGGSDGESGGSSDLLYDLYSVVNHMGGLSGGHYTACCLSTPCSPGGIEDA
ASVGYPQDSRSPPWLYFDDEFVEELPPARVVSEAAYVLFYKRRRVTGANL
VNTTV*
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mRNA from alignment at Contig_43:649613..650753+

Legend: exonpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_13759 ID=mRNA_13759|Name=jgi.p|Trimin1|166310|organism=Tribonema minus UTEX_B_3156 |type=mRNA|length=1141bp|location=Sequence derived from alignment at Contig_43:649613..650753+ (Tribonema minus UTEX_B_3156 )
GGTGGCGGGAGCGACGGCGAAAGTGGCGGTAGCTCCGACCTTCTCTACGA CCTCTACAGCGTGGTCAACCATATGGGCGGTCTTAGTGGGGGCCACTATA CAGGTGGGCGGAGGACTTTGAGAGTAGTAAGCGTTAGGGCTAGGGTTAGG GACGCTCAGGGAGCTCACAAGTTCACAAAGCTTGGCGCCTAACCTAACCT AACCCTAACCCTAACCCGTACAGGAGGGTGGAGAAGACTGGGACCCCAAC TGGGAAAGCGGGACCCAGCATCAAACCTCTTCGGCAAAGTCTGGTTCGAA CCCTGCCAGCGTTCGCTACTGAGGTTCAACACATTGAAGTTAATATTTAG GATTGGATTTGGGTTTACGGAACCCGCGCATGCAGTGCATGGCGCACATA CGGCAGCCGAAGACACGGAGCACGTGCGGTGGGGGGGGGGAACAACGCCT TCGTGTCCCCCTTCAGTTGTGGCTTGGTCACAGTCGCAGTGGCGGGCAGG TTGCGCTGGTGCCTAACCCTTACCCTAAACCTAACCCTTGTACTAATCTG TCGCTCCCCCAACATCACCACCACAACACGGGCGCACAATCGCTGCAGCA TCTAGCTCAGCGACAGCATACGCAGACTGTCGCCGTACTCAGGCGCATGG TCATTGCTGCCCACTCCGCTCATTTGTGCTGTCATTCAAAGTGCGCCGTG TTCATGCAAAAACACATGCAAGTATGATGTCAAAGTTTTTGGCGATTCTG GCACAAACTGGAGCCATCAAGCAGGAACCAGCCAAAGGCGTCGAGAGAGG GGGGAGCGAGCGCCATGCGTCGAGTGCCATGCGTCGATCGCCCTTGTGGC ATCATAGTACTTAGAACTTGAAGTATGTGACACTTATTACGCGCGCACTG CTGTCGCCGCCCCTGCCCCCCTGCAGCGTGCTGCCTCTCCACTCCCTGCT CCCCGGGGGGCATAGAAGACGCAGCCTCCGTGGGCTATCCGCAGGACTCG CGCAGCCCCCCGTGGCTCTACTTCGACGACGAATTCGTGGAGGAATTACC CCCTGCGCGTGTGGTCAGCGAAGCTGCGTACGTCCTCTTCTACAAGCGGC GGCGCGTCACTGGCGCCAACCTGGTCAACACCACCGTATGA
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Coding sequence (CDS) from alignment at Contig_43:649613..650753+

>mRNA_13759 ID=mRNA_13759|Name=jgi.p|Trimin1|166310|organism=Tribonema minus UTEX_B_3156 |type=CDS|length=318bp|location=Sequence derived from alignment at Contig_43:649613..650753+ (Tribonema minus UTEX_B_3156 )
GGTGGCGGGAGCGACGGCGAAAGTGGCGGTAGCTCCGACCTTCTCTACGA
CCTCTACAGCGTGGTCAACCATATGGGCGGTCTTAGTGGGGGCCACTATA
CAGCGTGCTGCCTCTCCACTCCCTGCTCCCCGGGGGGCATAGAAGACGCA
GCCTCCGTGGGCTATCCGCAGGACTCGCGCAGCCCCCCGTGGCTCTACTT
CGACGACGAATTCGTGGAGGAATTACCCCCTGCGCGTGTGGTCAGCGAAG
CTGCGTACGTCCTCTTCTACAAGCGGCGGCGCGTCACTGGCGCCAACCTG
GTCAACACCACCGTATGA
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