mRNA_13716 (mRNA) Tribonema minus UTEX_B_3156

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview


Name	jgi.p\|Trimin1\|351308
Unique Name	mRNA_13716
Type	mRNA
Organism	Tribonema minus UTEX_B_3156 (Tribonema minus UTEX_B_3156 )

Homology

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BLAST of jgi.p|Trimin1|351308 vs. uniprot
Match: A0A835YLV3_9STRA (Aha1_N domain-containing protein n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A835YLV3_9STRA)

HSP 1 Score: 283 bits (723), Expect = 2.060e-91
Identity = 161/161 (100.00%), Postives = 161/161 (100.00%), Query Frame = 1

Query:    1 MNSPESSKHVPGSTAGQVGAAVPGSVTGTASITAIRGELRYLYDIAFDLPFKCTSAPGDGACVAAGVLKFSDVQNDVGGQYEVEVTWTGDQSRGALLTALHFSHSCHFKPSTSQTVXXXXXXXXXXXXXXLRAELGAAGAAARRVARVVAEGFEPVYHAQR 483
            MNSPESSKHVPGSTAGQVGAAVPGSVTGTASITAIRGELRYLYDIAFDLPFKCTSAPGDGACVAAGVLKFSDVQNDVGGQYEVEVTWTGDQSRGALLTALHFSHSCHFKPSTSQTVXXXXXXXXXXXXXXLRAELGAAGAAARRVARVVAEGFEPVYHAQR
Sbjct:    1 MNSPESSKHVPGSTAGQVGAAVPGSVTGTASITAIRGELRYLYDIAFDLPFKCTSAPGDGACVAAGVLKFSDVQNDVGGQYEVEVTWTGDQSRGALLTALHFSHSCHFKPSTSQTVXXXXXXXXXXXXXXLRAELGAAGAAARRVARVVAEGFEPVYHAQR 161

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BLAST of jgi.p|Trimin1|351308 vs. uniprot
Match: A0A835YJX7_9STRA (Uncharacterized protein n=2 Tax=Tribonema minus TaxID=303371 RepID=A0A835YJX7_9STRA)

HSP 1 Score: 69.3 bits (168), Expect = 3.740e-10
Identity = 39/41 (95.12%), Postives = 39/41 (95.12%), Query Frame = -1

Query:  580 PRRAGAAAAADRAAADRLPRRTAAPHSHALLLLSALATRCR 702
            P  AGAAAAADRAAADRLPRRTAAPHSHALLLLSALATRCR
Sbjct:  143 PLAAGAAAAADRAAADRLPRRTAAPHSHALLLLSALATRCR 183

The following BLAST results are available for this feature:

BLAST of jgi.p|Trimin1|351308 vs. uniprot

BLAST of jgi.p|Trimin1|351308 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 2


Match Name	E-value	Identity	Description
A0A835YLV3_9STRA	2.060e-91	100.00	Aha1_N domain-containing protein n=1 Tax=Tribonema...	[more]
A0A835YJX7_9STRA	3.740e-10	95.12	Uncharacterized protein n=2 Tax=Tribonema minus Ta...	[more]

Alignments

The following features are aligned


Aligned Feature	Feature Type	Alignment Location
Contig_86	contig	Contig_86:620827..623856 +

Analyses

This mRNA is derived from or has results from the following analyses


Analysis Name	Date Performed
Diamond blastx: OGS1.0 vs UniRef90	2022-09-19
OGS1.0 of Tribonema minus UTEX_B_3156	2021-06-17

Properties


Property Name	Value
ProteomeId	Trimin1\|351308\|estExt_Genemark1.C_Ctg_860063
Description	Activator of Hsp90 ATPase, N-terminal
COG category	O
Max annot lvl	4776\|Peronosporales
EggNOG OGs	COG0457@1\|root,KOG0548@2759\|Eukaryota,3QBMR@4776\|Peronosporales
Evalue	5.55e-06
Seed ortholog	4792.ETI54534
Hectar predicted targeting category	other localisation
TranscriptId	351630
Track	FilteredModels1
ProteinId	351308

Relationships

This mRNA is a part of the following gene feature(s):


Feature Name	Unique Name	Species	Type	Position
jgi.p\|Trimin1\|351308	gene_13716	Tribonema minus UTEX_B_3156	gene	Contig_86 620827..623856 +

The following polypeptide feature(s) derives from this mRNA:


Feature Name	Unique Name	Species	Type	Position
jgi.p\|Trimin1\|351308	Trimin1\|351308\|estExt_Genemark1.C_Ctg_860063	Tribonema minus UTEX_B_3156	polypeptide	Contig_86 620827..622998 +

The following exon feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type	Position
exon_13716_1	exon_13716_1	Tribonema minus UTEX_B_3156	exon	Contig_86 620827..620877 +
exon_13716_2	exon_13716_2	Tribonema minus UTEX_B_3156	exon	Contig_86 621940..622140 +
exon_13716_3	exon_13716_3	Tribonema minus UTEX_B_3156	exon	Contig_86 622704..622796 +
exon_13716_4	exon_13716_4	Tribonema minus UTEX_B_3156	exon	Contig_86 622858..623856 +

The following CDS feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type	Position
CDS_13716	CDS_13716	Tribonema minus UTEX_B_3156	CDS	Contig_86 620827..620877 +

The following three_prime_UTR feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type	Position
UTR3_13716	UTR3_13716	Tribonema minus UTEX_B_3156	three_prime_UTR	Contig_86 622999..623856 +

Sequences

The following sequences are available for this feature:

mRNA - spliced transcript sequence
protein sequence
mRNA from alignment at Contig_86:620827..623856+
coding sequence from alignment at Contig_86:620827..623856+

spliced messenger RNA

>mRNA_13716 ID=mRNA_13716|Name=jgi.p|Trimin1|351308|organism=Tribonema minus UTEX_B_3156 |type=mRNA|length=1344bp|location=Sequence derived from alignment at Contig_86:620827..623856+ (Tribonema minus UTEX_B_3156 )|Notes=Excludes all bases but those of type(s): exon.  
ATGAACTCGCCAGAGTCGTCAAAGCACGTGCCTGGCAGCACTGCTGGTCA
GGTCGGCGCAGCCGTCCCCGGGAGCGTCACCGGCACCGCCAGCATCACGG
CCATTCGAGGCGAGTTGCGCTACCTCTACGACATCGCGTTCGATCTGCCG
TTCAAGTGCACGAGCGCGCCAGGCGACGGCGCGTGCGTCGCGGCGGGCGT
GTTGAAGTTTTCGGACGTGCAGAACGACGTCGGGGGACAGTACGAAGTTG
AGGTCACGTGGACGGGCGACCAGTCGCGCGGAGCGCTGCTGACGGCGCTG
CACTTCTCTCATTCCTGCCACTTCAAACCAAGCACATCGCAAACGGTCGC
CTGGACGGGTGACCGGCCGCGCGGAGCGCTGCTGACGGCGCTGCGCGCGG
AGCTGGGCGCCGCGGGCGCCGCCGCGCGGCGCGTCGCGCGCGTCGTGGCG
GAGGGCTTTGAGCCCGTGTACCACGCGCAGCGCTAGCGCAACCGCAGCAG
CAGCAGCAGCAGCGGCAGCGCTCGGCAACGTCGCCGGAGCGTCGCCGCCG
TGAGCGCGCGCCAGCAGTGGCAGCGCTCAACGGCACCGCGTCGCCAGCGC
ACTCAGCAGTAGCAGGGCGTGTGAATGCGGCGCTGCCGTACGCCGCGGCA
AACGGTCCGCGGCGGCGCGGTCCGCGGCGGCGGCAGCACCCGCTCTCCGC
GGAGGGGAACACGCGCCGCGCTCGCGCGCTTCGCCCCCGTGTGCGCCAAA
TGAGCCTCTCTGTCGACGCAAGCGGCGCACGCGTGGCGTGGCCTGGCGCG
CTCATGTGCGGCAGCCCACGCAGCGTGGCTTGCGCGCTCACGTCGCTCGC
GAGGCGCGGGGTACGCGGCCGCGGCGTAACTTCAAGGCGTCGCACTTGCA
AGGCAGTGCTCCGCCTGCCAGCGCGTCGCGGGGAGCTCCCTTTAGCCGTG
GACACGGCGTATGCGGCTGCTGCACATGCACTCTTGTGGTGACGTTGCCC
GGACGGCTGCGGCGAAGGCGACGACAGCGAAGGCGCCAGCAGCGTCGCCG
TGCAACAACGCTGTGGCAGATAGCTGTTGGCGTATACACAAGTGCACAGC
TGCAGGATTGGCTGCTAAGCTATTTGCAGTAGAGCTTGACCGAGCAAGGC
TTGCGTTATAGACGCGCACACGCTCGTGCCATGCAGGCGCCACCTCTGCT
TCTCTGCACAGCAGGCTTCGCGCTGTTGTGAAGCTCGGCACACGCTGGCC
CGCTATGCGAAGTTGGTCACTGCATCCGGTGCCCCGCTGACGTTCACCGG
CTGCTGAGCGGCTGAACGCTTTAAAAAAATACAATATACTTCAA

protein sequence of jgi.p|Trimin1|351308

>Trimin1|351308|estExt_Genemark1.C_Ctg_860063 ID=Trimin1|351308|estExt_Genemark1.C_Ctg_860063|Name=jgi.p|Trimin1|351308|organism=Tribonema minus UTEX_B_3156 |type=polypeptide|length=162bp
MNSPESSKHVPGSTAGQVGAAVPGSVTGTASITAIRGELRYLYDIAFDLP
FKCTSAPGDGACVAAGVLKFSDVQNDVGGQYEVEVTWTGDQSRGALLTAL
HFSHSCHFKPSTSQTVAWTGDRPRGALLTALRAELGAAGAAARRVARVVA
EGFEPVYHAQR*

mRNA from alignment at Contig_86:620827..623856+

Legend: polypeptideexonCDSthree_prime_UTR

Hold the cursor over a type above to highlight its positions in the sequence below.

>mRNA_13716 ID=mRNA_13716|Name=jgi.p|Trimin1|351308|organism=Tribonema minus UTEX_B_3156 |type=mRNA|length=3030bp|location=Sequence derived from alignment at Contig_86:620827..623856+ (Tribonema minus UTEX_B_3156 )
ATGAACTCGCCAGAGTCGTCAAAGCACGTGCCTGGCAGCACTGCTGGTCA
GGTCAGTCATATGAGTCGTGCCTGTCTCAGAAAATAATCAGCCAATGTAC
TTTTCAGCAAAATACGCTTTTGGTGTGTGCGGATCTGTTAAAGCAAACTT
CAACAACAACAACAACAAAAAAAACTAACGGAGTCCTCAAACTTCAAATC
GGTGGCTGCATTGACAGAAATGCTTACCATTGTGCTGTGTGTCCTTTGTG
CAGCAGCCGGCAGGATCACTTTGGAACAACGCAGGTACGCCTGCATGCTT
AGAGTCGCTGTGATTAGGCGCCCAAGTCACTTATTCAATGCAAAGAAGAT
GGTGCAACATTTGCCTGTAAGCATGGGCATTTCCTATATATATGCAAGGC
GTAACTTTTTTAGCGTCGCACTTTGATGATTTTCAAACAGTGCAAATGCG
ACCGTTTTTCATTACTCACCACGGGTACATGCAAGCAAAGCATGATTTGC
CATGCTGTGTTTCCAGGCTGCACGTCATGAGCCAAGCACAGTTGCACCAT
TACGCAGACGGTTTGCACCCCTTTTCTACGCGTGCAATTAGGCACCTGGG
AGGAGAGGGATCGAACCCGATGGGCCTTGCAAGAGCTGACGGCGCACTTG
GTTCCTTTCACTTTGGCTGTTGCAGGCCCTGATGGGCTGCCACTGACAGT
TGAGGTCAGTGACTGAGCACGGAAGTGAGCAAAGCGATTGAGGGCCCGAG
TCACTGGATCGCCTGAGTCCAGCAATGATGACAGCTAAATCGCTTGAAGC
GACGTTCATGGCAGCACTCGTCATCCCGTGATGATTTTTGTCAGCTGTTG
TCAGGCATGCTGGAGCCACGGTAAACAAAACAAGACATGCACATCCTGGC
ATACATGGTCCCTCAAGTGAATCTGCTTAATGTCATGCTCCCATGATGCT
GCATGTCCACAAGGCTGCGCCGGACGCGGCGTCTGGTGCCAGCTGCAATC
AAGAGCTGCTTTGTGCTTCACCAACGCTTCCGATCTGCCAGTCACTATAA
AACGTGCATACACAGCAGATGAAGTGTCGATTTTGTTGTATGTGCTCGGT
CCTGCCCCTGAAGGTCGGCGCAGCCGTCCCCGGGAGCGTCACCGGCACCG
CCAGCATCACGGCCATTCGAGGCGAGTTGCGCTACCTCTACGACATCGCG
TTCGATCTGCCGTTCAAGTGCACGAGCGCGCCAGGCGACGGCGCGTGCGT
CGCGGCGGGCGTGTTGAAGTTTTCGGACGTGCAGAACGACGTCGGGGGAC
AGTACGAAGTTGAGGTGTGTGAACTCTTTCTCGGGGCGCGATGCGACATG
GTCCACACAATGACCCTATGCTCATCGACGCTTGCCAGACGATGCACTTT
TAGTACAAGTTGTTTTGAGTTGAGTGCGGGTTCATGATCGACACTGCACA
TCGTGCATGGACACATACCGCTCCGCCCGCATCTCCCTACCTACCTTGTG
GTTTGCCTCGTATGACCTCCCCAGAACGCAGCCAGCACGCGTCTTGATTA
CGGCACCTCTCTCAGTCCTGCTCCATGCTGATCAAGCGGATCATCAACAG
CAAGTACTGGTGGCTGCCGCACACAACAGTGCACCTCCCTGTATCCCCAT
TCGCTTGCTACCATGGCCGGGGGTCAAGTTGACACAGACGCCCTGCCGCG
CGTAGCGCCGCTGACCAGCGCGGCACTTCTCTCATTCCTGTCAGCCCAAT
TTCAATTGTTGAAAGCGCATCACAAATGGTGCCCTGCATATCACATATCA
CGCCCCGGCCGTCTGCGCGCCCCCTGCGCGCGCTGCCCTTCCCCCCCCCC
CCCCCCTCCCCCGCGCGCGCCCCCCAGGTCACGTGGACGGGCGACCAGTC
GCGCGGAGCGCTGCTGACGGCGCTGCACTTCTCTCATTCCTGCCACTTCA
AACCAAGCACATCGCAAACGGTGCTGCGTACATCACGCTGCGCCTCTCTG
CGCCCCCCCTGCCCCCCCCCGCCCCCCCCAGGTCGCCTGGACGGGTGACC
GGCCGCGCGGAGCGCTGCTGACGGCGCTGCGCGCGGAGCTGGGCGCCGCG
GGCGCCGCCGCGCGGCGCGTCGCGCGCGTCGTGGCGGAGGGCTTTGAGCC
CGTGTACCACGCGCAGCGCTAGCGCAACCGCAGCAGCAGCAGCAGCAGCG
GCAGCGCTCGGCAACGTCGCCGGAGCGTCGCCGCCGTGAGCGCGCGCCAG
CAGTGGCAGCGCTCAACGGCACCGCGTCGCCAGCGCACTCAGCAGTAGCA
GGGCGTGTGAATGCGGCGCTGCCGTACGCCGCGGCAAACGGTCCGCGGCG
GCGCGGTCCGCGGCGGCGGCAGCACCCGCTCTCCGCGGAGGGGAACACGC
GCCGCGCTCGCGCGCTTCGCCCCCGTGTGCGCCAAATGAGCCTCTCTGTC
GACGCAAGCGGCGCACGCGTGGCGTGGCCTGGCGCGCTCATGTGCGGCAG
CCCACGCAGCGTGGCTTGCGCGCTCACGTCGCTCGCGAGGCGCGGGGTAC
GCGGCCGCGGCGTAACTTCAAGGCGTCGCACTTGCAAGGCAGTGCTCCGC
CTGCCAGCGCGTCGCGGGGAGCTCCCTTTAGCCGTGGACACGGCGTATGC
GGCTGCTGCACATGCACTCTTGTGGTGACGTTGCCCGGACGGCTGCGGCG
AAGGCGACGACAGCGAAGGCGCCAGCAGCGTCGCCGTGCAACAACGCTGT
GGCAGATAGCTGTTGGCGTATACACAAGTGCACAGCTGCAGGATTGGCTG
CTAAGCTATTTGCAGTAGAGCTTGACCGAGCAAGGCTTGCGTTATAGACG
CGCACACGCTCGTGCCATGCAGGCGCCACCTCTGCTTCTCTGCACAGCAG
GCTTCGCGCTGTTGTGAAGCTCGGCACACGCTGGCCCGCTATGCGAAGTT
GGTCACTGCATCCGGTGCCCCGCTGACGTTCACCGGCTGCTGAGCGGCTG
AACGCTTTAAAAAAATACAATATACTTCAA

Coding sequence (CDS) from alignment at Contig_86:620827..623856+

>mRNA_13716 ID=mRNA_13716|Name=jgi.p|Trimin1|351308|organism=Tribonema minus UTEX_B_3156 |type=CDS|length=486bp|location=Sequence derived from alignment at Contig_86:620827..623856+ (Tribonema minus UTEX_B_3156 )
ATGAACTCGCCAGAGTCGTCAAAGCACGTGCCTGGCAGCACTGCTGGTCA
GGTCGGCGCAGCCGTCCCCGGGAGCGTCACCGGCACCGCCAGCATCACGG
CCATTCGAGGCGAGTTGCGCTACCTCTACGACATCGCGTTCGATCTGCCG
TTCAAGTGCACGAGCGCGCCAGGCGACGGCGCGTGCGTCGCGGCGGGCGT
GTTGAAGTTTTCGGACGTGCAGAACGACGTCGGGGGACAGTACGAAGTTG
AGGTCACGTGGACGGGCGACCAGTCGCGCGGAGCGCTGCTGACGGCGCTG
CACTTCTCTCATTCCTGCCACTTCAAACCAAGCACATCGCAAACGGTCGC
CTGGACGGGTGACCGGCCGCGCGGAGCGCTGCTGACGGCGCTGCGCGCGG
AGCTGGGCGCCGCGGGCGCCGCCGCGCGGCGCGTCGCGCGCGTCGTGGCG
GAGGGCTTTGAGCCCGTGTACCACGCGCAGCGCTAG