mRNA_13589 (mRNA) Tribonema minus UTEX_B_3156

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
Namejgi.p|Trimin1|154157
Unique NamemRNA_13589
TypemRNA
OrganismTribonema minus UTEX_B_3156 (Tribonema minus UTEX_B_3156 )
Homology
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BLAST of jgi.p|Trimin1|154157 vs. uniprot
Match: A0A835ZKH1_9STRA (Uncharacterized protein (Fragment) n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A835ZKH1_9STRA)

HSP 1 Score: 161 bits (407), Expect = 1.320e-50
Identity = 69/69 (100.00%), Postives = 69/69 (100.00%), Query Frame = 1 
Query:    1 TGDFNACELPHLRQDCPRHSFEASSRSTYCANCFCFVCDGPAPDCQHWLTHCQATNRGPEARKWKALRR 207
            TGDFNACELPHLRQDCPRHSFEASSRSTYCANCFCFVCDGPAPDCQHWLTHCQATNRGPEARKWKALRR
Sbjct:    1 TGDFNACELPHLRQDCPRHSFEASSRSTYCANCFCFVCDGPAPDCQHWLTHCQATNRGPEARKWKALRR 69
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BLAST of jgi.p|Trimin1|154157 vs. uniprot
Match: A0A8J5X399_DIALT (Uncharacterized protein n=1 Tax=Diacronema lutheri TaxID=2081491 RepID=A0A8J5X399_DIALT)

HSP 1 Score: 67.8 bits (164), Expect = 1.300e-11
Identity = 34/64 (53.12%), Postives = 41/64 (64.06%), Query Frame = 1 
Query:   22 ELPHLRQDCPRHSF--EASSRS-TYCANCFCFVCDGPAPDCQHWLTHCQATNRGPEARKWKALR 204
            + PH R++C RH F  EASSR+  +CANCFC+VCD PA DC  W  HC A N G  A  W+  R
Sbjct:   69 DFPHARENCARHMFRKEASSRNLVFCANCFCYVCDIPASDCDLWQAHCDA-NTGDAA--WRQRR 129
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BLAST of jgi.p|Trimin1|154157 vs. uniprot
Match: A0A482T1P3_9ARCH (PDZ domain-containing protein n=1 Tax=archaeon TaxID=1906665 RepID=A0A482T1P3_9ARCH)

HSP 1 Score: 62.4 bits (150), Expect = 1.040e-9
Identity = 30/76 (39.47%), Postives = 44/76 (57.89%), Query Frame = 1 
Query:   16 ACELPHLRQDCPRHSFE----ASSRS--------TYCANCFCFVCDGPAPDCQHWLTHCQATNRGPEARKWKALRR 207
            A E+PH R+ C +H F     A++R+        T+C NC+C+VC+  A +CQ W  HC AT + P+   WK L+R
Sbjct:  296 ASEMPHQREACTKHPFRNYMSANTRASIPTSVNLTFCLNCYCYVCEVKASECQDWPMHCNATYKMPQ---WKELQR 368
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BLAST of jgi.p|Trimin1|154157 vs. uniprot
Match: UPI001C097931 (uncharacterized protein zgc:112980 isoform X2 n=1 Tax=Alosa sapidissima TaxID=34773 RepID=UPI001C097931)

HSP 1 Score: 62.0 bits (149), Expect = 1.400e-9
Identity = 29/65 (44.62%), Postives = 34/65 (52.31%), Query Frame = 1 
Query:   25 LPHLRQDCPRHSFEASS-----RSTYCANCFCFVCDGPAPDCQHWLTHCQATNRGPEARKWKALR 204
            LPH R DC  H F  +S       +YC  CFC+VCD  A +CQ W THC A    P    W+A R
Sbjct:   55 LPHARSDCSAHPFRETSGHELGNESYCEQCFCYVCDTLASECQIWSTHCDAH---PRCSVWRAQR 116
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BLAST of jgi.p|Trimin1|154157 vs. uniprot
Match: UPI001C0A3C28 (uncharacterized protein zgc:112980 isoform X1 n=5 Tax=Alosa sapidissima TaxID=34773 RepID=UPI001C0A3C28)

HSP 1 Score: 62.0 bits (149), Expect = 1.400e-9
Identity = 29/65 (44.62%), Postives = 34/65 (52.31%), Query Frame = 1 
Query:   25 LPHLRQDCPRHSFEASS-----RSTYCANCFCFVCDGPAPDCQHWLTHCQATNRGPEARKWKALR 204
            LPH R DC  H F  +S       +YC  CFC+VCD  A +CQ W THC A    P    W+A R
Sbjct:   55 LPHARSDCSAHPFRETSGHELGNESYCEQCFCYVCDTLASECQIWSTHCDAH---PRCSVWRAQR 116
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BLAST of jgi.p|Trimin1|154157 vs. uniprot
Match: UPI001D01AFA3 (31 kDa ribonucleoprotein, chloroplastic-like n=1 Tax=Triticum aestivum TaxID=4565 RepID=UPI001D01AFA3)

HSP 1 Score: 60.8 bits (146), Expect = 3.560e-9
Identity = 30/73 (41.10%), Postives = 39/73 (53.42%), Query Frame = 1 
Query:    4 GDFNACELPHLRQDCPRHSFEASSRSTYCANCFCFVCDGPAPDCQHWLT------HCQATNRGPEARKWKALR 204
            G F   + PH R  C    F A+S   +C  C+CFVCD PAP C +W T      HC AT++     KW+A+R
Sbjct:   98 GQFACRDFPHSRHLCSTMPFGATSHEKHCTQCYCFVCDAPAP-CAYWGTGLLADDHCHATDKET---KWRAMR 166
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BLAST of jgi.p|Trimin1|154157 vs. uniprot
Match: A0A6P8F9U8_CLUHA (uncharacterized protein zgc:112980 isoform X1 n=3 Tax=Clupea harengus TaxID=7950 RepID=A0A6P8F9U8_CLUHA)

HSP 1 Score: 59.7 bits (143), Expect = 9.150e-9
Identity = 26/72 (36.11%), Postives = 36/72 (50.00%), Query Frame = 1 
Query:   25 LPHLRQDCPRHSFEASS------------RSTYCANCFCFVCDGPAPDCQHWLTHCQATNRGPEARKWKALR 204
            LPH R DCP H F  ++              ++C  CFC+VCD PA +C+ W +HC A    P    W++ R
Sbjct:   59 LPHARSDCPAHPFRETAGPELGNTHTSELNISFCEQCFCYVCDAPASECEVWRSHCDAH---PRCSLWRSQR 127
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BLAST of jgi.p|Trimin1|154157 vs. uniprot
Match: A0A2P5EDT2_TREOI (Uncharacterized protein n=2 Tax=Cannabaceae TaxID=3481 RepID=A0A2P5EDT2_TREOI)

HSP 1 Score: 57.4 bits (137), Expect = 1.880e-8
Identity = 29/69 (42.03%), Postives = 37/69 (53.62%), Query Frame = 1 
Query:   16 AC-ELPHLRQDCPRHSFEASSRSTYCANCFCFVCDGPAPDCQHWL----THCQATNRGPEARKWKALRR 207
            AC + PH R  C +  FE SS  +YC  C+C+VCD PAP C  W      HC A+ +      WK LR+
Sbjct:  104 ACRDYPHSRHLCMKFPFETSSHESYCEQCYCYVCDSPAP-CSSWTEPKPAHCHASEQDGN---WKFLRK 168
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BLAST of jgi.p|Trimin1|154157 vs. uniprot
Match: A0A4Y7IS16_PAPSO (Uncharacterized protein n=2 Tax=Papaver somniferum TaxID=3469 RepID=A0A4Y7IS16_PAPSO)

HSP 1 Score: 56.6 bits (135), Expect = 2.930e-8
Identity = 29/67 (43.28%), Postives = 37/67 (55.22%), Query Frame = 1 
Query:   16 AC-ELPHLRQDCPRHSFEASSRSTYCANCFCFVCDGPAPDCQHW---LTHCQATNRGPEARKWKALR 204
            AC + PH R  C +  F  +  S+YC  C+C+VCD  AP C+ W   + HC AT   P   KWK LR
Sbjct:   87 ACRDYPHSRHLCVKFPFNKTPHSSYCKQCYCYVCDSIAP-CKFWSAPVDHCHATAHDP---KWKILR 149
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BLAST of jgi.p|Trimin1|154157 vs. uniprot
Match: UPI001B7ED997 (uncharacterized protein zgc:112980 n=1 Tax=Polyodon spathula TaxID=7913 RepID=UPI001B7ED997)

HSP 1 Score: 57.4 bits (137), Expect = 3.260e-8
Identity = 25/70 (35.71%), Postives = 34/70 (48.57%), Query Frame = 1 
Query:   25 LPHLRQDCPRHSFEASSRST---------YCANCFCFVCDGPAPDCQHWLT----HCQATNRGPEARKWK 195
            +PH R DC  H F  S   T         +C  C+C++CD  A +CQ W+T    HC A  R P  + W+
Sbjct:   70 MPHARYDCTSHVFSQSENQTSSPVGTNSAFCEQCYCYICDKLASECQSWVTPAFCHCNAHKRSPFWKSWR 139
The following BLAST results are available for this feature:
BLAST of jgi.p|Trimin1|154157 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
A0A835ZKH1_9STRA1.320e-50100.00Uncharacterized protein (Fragment) n=1 Tax=Tribone... [more]
A0A8J5X399_DIALT1.300e-1153.13Uncharacterized protein n=1 Tax=Diacronema lutheri... [more]
A0A482T1P3_9ARCH1.040e-939.47PDZ domain-containing protein n=1 Tax=archaeon Tax... [more]
UPI001C0979311.400e-944.62uncharacterized protein zgc:112980 isoform X2 n=1 ... [more]
UPI001C0A3C281.400e-944.62uncharacterized protein zgc:112980 isoform X1 n=5 ... [more]
UPI001D01AFA33.560e-941.1031 kDa ribonucleoprotein, chloroplastic-like n=1 T... [more]
A0A6P8F9U8_CLUHA9.150e-936.11uncharacterized protein zgc:112980 isoform X1 n=3 ... [more]
A0A2P5EDT2_TREOI1.880e-842.03Uncharacterized protein n=2 Tax=Cannabaceae TaxID=... [more]
A0A4Y7IS16_PAPSO2.930e-843.28Uncharacterized protein n=2 Tax=Papaver somniferum... [more]
UPI001B7ED9973.260e-835.71uncharacterized protein zgc:112980 n=1 Tax=Polyodo... [more]

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
Contig_126contigContig_126:405057..405263 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Tribonema minus UTEX_B_31562021-06-17
Properties
Property NameValue
ProteomeIdTrimin1|154157|gw1.126.73.1
BRITEko00000,ko03032
KEGG koko:K10736
GOsGO:0000228,GO:0000724,GO:0000725,GO:0000727,GO:0000785,GO:0000790,GO:0001932,GO:0001934,GO:0003674,GO:0003676,GO:0003677,GO:0003688,GO:0003690,GO:0003697,GO:0003824,GO:0003896,GO:0003899,GO:0005488,GO:0005515,GO:0005575,GO:0005622,GO:0005623,GO:0005634,GO:0005657,GO:0005694,GO:0006139,GO:0006259,GO:0006260,GO:0006261,GO:0006269,GO:0006270,GO:0006271,GO:0006275,GO:0006281,GO:0006302,GO:0006310,GO:0006325,GO:0006342,GO:0006348,GO:0006355,GO:0006725,GO:0006807,GO:0006950,GO:0006974,GO:0006996,GO:0008150,GO:0008152,GO:0009058,GO:0009059,GO:0009889,GO:0009890,GO:0009891,GO:0009892,GO:0009893,GO:0009987,GO:0010468,GO:0010556,GO:0010557,GO:0010558,GO:0010562,GO:0010604,GO:0010605,GO:0010629,GO:0016043,GO:0016070,GO:0016458,GO:0016740,GO:0016772,GO:0016779,GO:0018130,GO:0019219,GO:0019220,GO:0019222,GO:0019438,GO:0022616,GO:0030466,GO:0031298,GO:0031323,GO:0031324,GO:0031325,GO:0031326,GO:0031327,GO:0031328,GO:0031399,GO:0031401,GO:0031974,GO:0031981,GO:0032268,GO:0032270,GO:0032774,GO:0032991,GO:0033554,GO:0034062,GO:0034641,GO:0034645,GO:0034654,GO:0035861,GO:0040029,GO:0042325,GO:0042327,GO:0043085,GO:0043170,GO:0043226,GO:0043227,GO:0043228,GO:0043229,GO:0043231,GO:0043232,GO:0043233,GO:0043565,GO:0043596,GO:0044093,GO:0044237,GO:0044238,GO:0044249,GO:0044260,GO:0044271,GO:0044422,GO:0044424,GO:0044427,GO:0044428,GO:0044446,GO:0044454,GO:0044464,GO:0044877,GO:0045740,GO:0045814,GO:0045892,GO:0045934,GO:0045935,GO:0045937,GO:0046483,GO:0048518,GO:0048519,GO:0048522,GO:0048523,GO:0050789,GO:0050790,GO:0050794,GO:0050896,GO:0051052,GO:0051054,GO:0051171,GO:0051172,GO:0051173,GO:0051174,GO:0051246,GO:0051247,GO:0051252,GO:0051253,GO:0051254,GO:0051276,GO:0051338,GO:0051347,GO:0051716,GO:0060255,GO:0065007,GO:0065009,GO:0070013,GO:0071704,GO:0071840,GO:0080090,GO:0090304,GO:0090329,GO:0090734,GO:0097159,GO:0097747,GO:0140098,GO:1900262,GO:1900264,GO:1901360,GO:1901362,GO:1901363,GO:1901576,GO:1902679,GO:1902680,GO:1903506,GO:1903507,GO:1903932,GO:1903934,GO:1904931,GO:1990837,GO:2000105,GO:2000112,GO:2000113,GO:2000278,GO:2000573,GO:2001141
DescriptionDNA replication origin binding
COG categoryT
Max annot lvl2759|Eukaryota
EggNOG OGsKOG3056@1|root,KOG3056@2759|Eukaryota
Evalue5.37e-12
Seed ortholog55529.EKX40398
Hectar predicted targeting categoryother localisation
TranscriptId154479
TrackFilteredModels1
ProteinId154157
Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesTypePosition
jgi.p|Trimin1|154157gene_13589Tribonema minus UTEX_B_3156 geneContig_126 405057..405263 -


The following exon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
exon_13589_1exon_13589_1Tribonema minus UTEX_B_3156 exonContig_126 405057..405263 -


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
CDS_13589CDS_13589Tribonema minus UTEX_B_3156 CDSContig_126 405057..405263 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
jgi.p|Trimin1|154157Trimin1|154157|gw1.126.73.1Tribonema minus UTEX_B_3156 polypeptideContig_126 405057..405263 -


Sequences
The following sequences are available for this feature:

spliced messenger RNA

>mRNA_13589 ID=mRNA_13589|Name=jgi.p|Trimin1|154157|organism=Tribonema minus UTEX_B_3156 |type=mRNA|length=207bp|location=Sequence derived from alignment at Contig_126:405057..405263- (Tribonema minus UTEX_B_3156 )|Notes=Excludes all bases but those of type(s): exon.  
ACTGGCGACTTCAATGCCTGCGAGCTGCCGCACCTCCGCCAGGACTGCCC
TCGTCACAGTTTCGAGGCCAGCTCCCGCTCCACCTACTGCGCCAACTGCT
TCTGCTTCGTCTGCGATGGGCCTGCGCCGGACTGCCAGCACTGGCTCACC
CACTGCCAGGCCACCAACAGAGGACCGGAGGCACGCAAATGGAAGGCACT
GCGGCGA
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protein sequence of jgi.p|Trimin1|154157

>Trimin1|154157|gw1.126.73.1 ID=Trimin1|154157|gw1.126.73.1|Name=jgi.p|Trimin1|154157|organism=Tribonema minus UTEX_B_3156 |type=polypeptide|length=69bp
TGDFNACELPHLRQDCPRHSFEASSRSTYCANCFCFVCDGPAPDCQHWLT
HCQATNRGPEARKWKALRR
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mRNA from alignment at Contig_126:405057..405263-

Legend: exonpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_13589 ID=mRNA_13589|Name=jgi.p|Trimin1|154157|organism=Tribonema minus UTEX_B_3156 |type=mRNA|length=207bp|location=Sequence derived from alignment at Contig_126:405057..405263- (Tribonema minus UTEX_B_3156 )
ACTGGCGACTTCAATGCCTGCGAGCTGCCGCACCTCCGCCAGGACTGCCC
TCGTCACAGTTTCGAGGCCAGCTCCCGCTCCACCTACTGCGCCAACTGCT
TCTGCTTCGTCTGCGATGGGCCTGCGCCGGACTGCCAGCACTGGCTCACC
CACTGCCAGGCCACCAACAGAGGACCGGAGGCACGCAAATGGAAGGCACT
GCGGCGA
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Coding sequence (CDS) from alignment at Contig_126:405057..405263-

>mRNA_13589 ID=mRNA_13589|Name=jgi.p|Trimin1|154157|organism=Tribonema minus UTEX_B_3156 |type=CDS|length=207bp|location=Sequence derived from alignment at Contig_126:405057..405263- (Tribonema minus UTEX_B_3156 )
ACTGGCGACTTCAATGCCTGCGAGCTGCCGCACCTCCGCCAGGACTGCCC
TCGTCACAGTTTCGAGGCCAGCTCCCGCTCCACCTACTGCGCCAACTGCT
TCTGCTTCGTCTGCGATGGGCCTGCGCCGGACTGCCAGCACTGGCTCACC
CACTGCCAGGCCACCAACAGAGGACCGGAGGCACGCAAATGGAAGGCACT
GCGGCGA
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