mRNA_13548 (mRNA) Tribonema minus UTEX_B_3156

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
Namejgi.p|Trimin1|143084
Unique NamemRNA_13548
TypemRNA
OrganismTribonema minus UTEX_B_3156 (Tribonema minus UTEX_B_3156 )
Homology
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BLAST of jgi.p|Trimin1|143084 vs. uniprot
Match: A0A836CP88_9STRA (Uncharacterized protein (Fragment) n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A836CP88_9STRA)

HSP 1 Score: 229 bits (583), Expect = 5.980e-76
Identity = 117/117 (100.00%), Postives = 117/117 (100.00%), Query Frame = 1 
Query:    1 GGELRRGKWTQEEDAYARRLIAEFKAGLLPLTDGTTLRTFLSIMLNCDPMRISKKFTGAHCIGKQVFRRDQAAVDARAPAAAARARTELASLEQRFMDRIASGGAQTGPGPAAFAPP 351
            GGELRRGKWTQEEDAYARRLIAEFKAGLLPLTDGTTLRTFLSIMLNCDPMRISKKFTGAHCIGKQVFRRDQAAVDARAPAAAARARTELASLEQRFMDRIASGGAQTGPGPAAFAPP
Sbjct:    1 GGELRRGKWTQEEDAYARRLIAEFKAGLLPLTDGTTLRTFLSIMLNCDPMRISKKFTGAHCIGKQVFRRDQAAVDARAPAAAARARTELASLEQRFMDRIASGGAQTGPGPAAFAPP 117
[Close]
BLAST of jgi.p|Trimin1|143084 vs. uniprot
Match: A0A7S2V6K2_9STRA (Hypothetical protein (Fragment) n=1 Tax=Fibrocapsa japonica TaxID=94617 RepID=A0A7S2V6K2_9STRA)

HSP 1 Score: 142 bits (357), Expect = 1.840e-41
Identity = 70/101 (69.31%), Postives = 82/101 (81.19%), Query Frame = 1 
Query:    1 GGELRRGKWTQEEDAYARRLIAEFKAGLLPLTDGTTLRTFLSIMLNCDPMRISKKFTGAHCIGKQVFRRDQAAVDARAPAAAARARTELASLEQRFMDRIA 303
            G  LRRGKWT EE+AYA RLI EFK+GLLPL DGTTLRTFLS +LNC+PMRISKKF G++CIGKQVFRR QA +D   P    R+R ELA LE+RF++R+A
Sbjct:   17 GSALRRGKWTPEEEAYATRLIQEFKSGLLPLADGTTLRTFLSKLLNCEPMRISKKFVGSNCIGKQVFRRRQADMDRLTPVEIDRSRQELAELERRFLERVA 117
[Close]
BLAST of jgi.p|Trimin1|143084 vs. uniprot
Match: A0A7S1U7I4_9STRA (Hypothetical protein (Fragment) n=1 Tax=Phaeomonas parva TaxID=124430 RepID=A0A7S1U7I4_9STRA)

HSP 1 Score: 144 bits (362), Expect = 1.690e-40
Identity = 71/98 (72.45%), Postives = 82/98 (83.67%), Query Frame = 1 
Query:   10 LRRGKWTQEEDAYARRLIAEFKAGLLPLTDGTTLRTFLSIMLNCDPMRISKKFTGAHCIGKQVFRRDQAAVDARAPAAAARARTELASLEQRFMDRIA 303
            LRRGKWT EE+AYA RLI EFK+GLLPLTDGTTLRTFLS +LNCDPMRISKKF G +CIGKQVFRR QA +D  +P    R+R ELA LE+RF++R+A
Sbjct:   57 LRRGKWTAEEEAYANRLIQEFKSGLLPLTDGTTLRTFLSKLLNCDPMRISKKFVGQNCIGKQVFRRRQADMDKLSPEEIERSRRELAELERRFLERVA 154
[Close]
BLAST of jgi.p|Trimin1|143084 vs. uniprot
Match: A0A7S4J6Z5_9STRA (Hypothetical protein (Fragment) n=1 Tax=Odontella aurita TaxID=265563 RepID=A0A7S4J6Z5_9STRA)

HSP 1 Score: 139 bits (349), Expect = 2.750e-39
Identity = 68/101 (67.33%), Postives = 82/101 (81.19%), Query Frame = 1 
Query:    1 GGELRRGKWTQEEDAYARRLIAEFKAGLLPLTDGTTLRTFLSIMLNCDPMRISKKFTGAHCIGKQVFRRDQAAVDARAPAAAARARTELASLEQRFMDRIA 303
            G  LRRGKWT EE++YA RLI EFKAGLLPLTDGTTLRTFLS +LNCDPMRISKKF G++CIGKQVFRR  A ++   P    ++R EL+ LE+RF++R+A
Sbjct:   36 GPPLRRGKWTPEEESYANRLILEFKAGLLPLTDGTTLRTFLSKLLNCDPMRISKKFVGSNCIGKQVFRRRTADINRLTPEQIQQSRQELSELERRFLERVA 136
[Close]
BLAST of jgi.p|Trimin1|143084 vs. uniprot
Match: A0A7R9UAE4_9STRA (Hypothetical protein n=1 Tax=Pinguiococcus pyrenoidosus TaxID=172671 RepID=A0A7R9UAE4_9STRA)

HSP 1 Score: 143 bits (361), Expect = 8.880e-38
Identity = 71/98 (72.45%), Postives = 82/98 (83.67%), Query Frame = 1 
Query:   10 LRRGKWTQEEDAYARRLIAEFKAGLLPLTDGTTLRTFLSIMLNCDPMRISKKFTGAHCIGKQVFRRDQAAVDARAPAAAARARTELASLEQRFMDRIA 303
            LRRGKWT EE+AYA RLI EFK+GLLPLTDGTTLRTFLS +LNCDPMRISKKF G +CIGKQVFRR QA +D  +P    R+R ELA LE+RF++R+A
Sbjct:  119 LRRGKWTVEEEAYANRLIQEFKSGLLPLTDGTTLRTFLSKLLNCDPMRISKKFVGQNCIGKQVFRRRQADMDKLSPEEIERSRRELAELERRFLERVA 216
[Close]
BLAST of jgi.p|Trimin1|143084 vs. uniprot
Match: D8LTT9_ECTSI (Uncharacterized protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D8LTT9_ECTSI)

HSP 1 Score: 139 bits (349), Expect = 1.000e-37
Identity = 70/101 (69.31%), Postives = 82/101 (81.19%), Query Frame = 1 
Query:   10 LRRGKWTQEEDAYARRLIAEFKAGLLPLTDGTTLRTFLSIMLNCDPMRISKKFTGAHCIGKQVFRRDQAAVDARAPA---AAARARTELASLEQRFMDRIA 303
            LRRGKWT EE+ YA RLI EFKAGLLPLTDGTTLRTFLSIMLNCDPMRISKKF G++CIGKQVFRR Q   +  +P    A  ++R ELA LE++F++R+A
Sbjct:  116 LRRGKWTPEEEKYANRLIQEFKAGLLPLTDGTTLRTFLSIMLNCDPMRISKKFVGSNCIGKQVFRRQQGVDEDSSPLSEEAMDKSRAELAELERKFLERVA 216
[Close]
BLAST of jgi.p|Trimin1|143084 vs. uniprot
Match: D8LN59_ECTSI (Uncharacterized protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D8LN59_ECTSI)

HSP 1 Score: 143 bits (360), Expect = 2.980e-37
Identity = 70/98 (71.43%), Postives = 83/98 (84.69%), Query Frame = 1 
Query:   10 LRRGKWTQEEDAYARRLIAEFKAGLLPLTDGTTLRTFLSIMLNCDPMRISKKFTGAHCIGKQVFRRDQAAVDARAPAAAARARTELASLEQRFMDRIA 303
            LRRGKWT EE+ YA RLI EFK+GLLPLTDGTTLRTFLS +LNCDPMRISKKF G++CIGKQVFRR QA +D   PA   R+R++LA LE+RF++R+A
Sbjct:  263 LRRGKWTSEEEDYANRLIQEFKSGLLPLTDGTTLRTFLSKLLNCDPMRISKKFVGSNCIGKQVFRRRQADMDRLQPADIERSRSQLADLERRFLERVA 360
[Close]
BLAST of jgi.p|Trimin1|143084 vs. uniprot
Match: A0A6H5KTB0_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KTB0_9PHAE)

HSP 1 Score: 143 bits (360), Expect = 3.020e-37
Identity = 70/98 (71.43%), Postives = 83/98 (84.69%), Query Frame = 1 
Query:   10 LRRGKWTQEEDAYARRLIAEFKAGLLPLTDGTTLRTFLSIMLNCDPMRISKKFTGAHCIGKQVFRRDQAAVDARAPAAAARARTELASLEQRFMDRIA 303
            LRRGKWT EE+ YA RLI EFK+GLLPLTDGTTLRTFLS +LNCDPMRISKKF G++CIGKQVFRR QA +D   PA   R+R++LA LE+RF++R+A
Sbjct:  352 LRRGKWTSEEEDYANRLIQEFKSGLLPLTDGTTLRTFLSKLLNCDPMRISKKFVGSNCIGKQVFRRRQADMDRLQPADIERSRSQLADLERRFLERVA 449
[Close]
BLAST of jgi.p|Trimin1|143084 vs. uniprot
Match: A0A7S3K4A1_9STRA (Hypothetical protein n=2 Tax=Aureoumbra lagunensis TaxID=44058 RepID=A0A7S3K4A1_9STRA)

HSP 1 Score: 142 bits (359), Expect = 3.490e-37
Identity = 71/99 (71.72%), Postives = 83/99 (83.84%), Query Frame = 1 
Query:   10 LRRGKWTQEEDAYARRLIAEFKAGLLPLTDGTTLRTFLSIMLNCDPMRISKKFTGAHCIGKQVFRRDQAAVDARAPAAAARARTELASLEQRFMDRIAS 306
            LRRGKWTQEE+AYA RLI EFK GLLPLTDGTTLRTFLS +L+CDPMRISKKF G++CIGKQVFRR QA +D  +P    R+R ELA LE+RF+ R+A+
Sbjct:  116 LRRGKWTQEEEAYANRLIHEFKLGLLPLTDGTTLRTFLSKLLHCDPMRISKKFVGSNCIGKQVFRRRQADMDRLSPEDIKRSRYELAELERRFLSRVAN 214
[Close]
BLAST of jgi.p|Trimin1|143084 vs. uniprot
Match: A0A7S4V135_9STRA (Hypothetical protein n=1 Tax=Ditylum brightwellii TaxID=49249 RepID=A0A7S4V135_9STRA)

HSP 1 Score: 140 bits (352), Expect = 4.510e-37
Identity = 69/101 (68.32%), Postives = 82/101 (81.19%), Query Frame = 1 
Query:    1 GGELRRGKWTQEEDAYARRLIAEFKAGLLPLTDGTTLRTFLSIMLNCDPMRISKKFTGAHCIGKQVFRRDQAAVDARAPAAAARARTELASLEQRFMDRIA 303
            G  LRRGKWT EE+AYA RLI EFKAGLLPLTDGTTLRTFLS +LNCDPMRISKKF G++CIGKQVFRR  A ++   P    ++R EL+ LE+RF++R+A
Sbjct:  191 GPPLRRGKWTAEEEAYANRLILEFKAGLLPLTDGTTLRTFLSKLLNCDPMRISKKFVGSNCIGKQVFRRRTADINRLTPDQIQQSRAELSELERRFLERVA 291
The following BLAST results are available for this feature:
BLAST of jgi.p|Trimin1|143084 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
A0A836CP88_9STRA5.980e-76100.00Uncharacterized protein (Fragment) n=1 Tax=Tribone... [more]
A0A7S2V6K2_9STRA1.840e-4169.31Hypothetical protein (Fragment) n=1 Tax=Fibrocapsa... [more]
A0A7S1U7I4_9STRA1.690e-4072.45Hypothetical protein (Fragment) n=1 Tax=Phaeomonas... [more]
A0A7S4J6Z5_9STRA2.750e-3967.33Hypothetical protein (Fragment) n=1 Tax=Odontella ... [more]
A0A7R9UAE4_9STRA8.880e-3872.45Hypothetical protein n=1 Tax=Pinguiococcus pyrenoi... [more]
D8LTT9_ECTSI1.000e-3769.31Uncharacterized protein n=1 Tax=Ectocarpus silicul... [more]
D8LN59_ECTSI2.980e-3771.43Uncharacterized protein n=1 Tax=Ectocarpus silicul... [more]
A0A6H5KTB0_9PHAE3.020e-3771.43Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
A0A7S3K4A1_9STRA3.490e-3771.72Hypothetical protein n=2 Tax=Aureoumbra lagunensis... [more]
A0A7S4V135_9STRA4.510e-3768.32Hypothetical protein n=1 Tax=Ditylum brightwellii ... [more]

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
Contig_126contigContig_126:113719..114069 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Tribonema minus UTEX_B_31562021-06-17
Properties
Property NameValue
ProteomeIdTrimin1|143084|gw1.126.29.1
Max annot lvl2759|Eukaryota
EggNOG OGs28HE3@1|root,2QPS9@2759|Eukaryota
Evalue4.89e-38
Seed ortholog2880.D8LN59
Hectar predicted targeting categoryother localisation
TranscriptId143406
TrackFilteredModels1
ProteinId143084
Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesTypePosition
jgi.p|Trimin1|143084gene_13548Tribonema minus UTEX_B_3156 geneContig_126 113719..114069 -


The following exon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
exon_13548_1exon_13548_1Tribonema minus UTEX_B_3156 exonContig_126 113719..114069 -


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
CDS_13548CDS_13548Tribonema minus UTEX_B_3156 CDSContig_126 113719..114069 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
jgi.p|Trimin1|143084Trimin1|143084|gw1.126.29.1Tribonema minus UTEX_B_3156 polypeptideContig_126 113719..114069 -


Sequences
The following sequences are available for this feature:

spliced messenger RNA

>mRNA_13548 ID=mRNA_13548|Name=jgi.p|Trimin1|143084|organism=Tribonema minus UTEX_B_3156 |type=mRNA|length=351bp|location=Sequence derived from alignment at Contig_126:113719..114069- (Tribonema minus UTEX_B_3156 )|Notes=Excludes all bases but those of type(s): exon.  
GGCGGCGAGCTGCGGCGCGGCAAGTGGACGCAGGAGGAGGACGCGTACGC
GCGGCGCCTCATCGCGGAGTTTAAGGCGGGCCTGCTGCCGCTGACGGACG
GCACGACGCTGCGCACGTTCCTCTCCATCATGCTCAACTGCGACCCGATG
CGCATCTCCAAGAAGTTCACGGGCGCGCACTGCATCGGCAAGCAGGTCTT
CCGGCGCGACCAGGCGGCGGTGGACGCGCGCGCGCCCGCCGCCGCCGCGC
GCGCGCGCACGGAGCTCGCCAGCCTCGAGCAGCGCTTCATGGACCGCATC
GCCTCGGGGGGCGCGCAGACGGGGCCGGGGCCCGCGGCGTTTGCGCCGCC
C
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protein sequence of jgi.p|Trimin1|143084

>Trimin1|143084|gw1.126.29.1 ID=Trimin1|143084|gw1.126.29.1|Name=jgi.p|Trimin1|143084|organism=Tribonema minus UTEX_B_3156 |type=polypeptide|length=117bp
GGELRRGKWTQEEDAYARRLIAEFKAGLLPLTDGTTLRTFLSIMLNCDPM
RISKKFTGAHCIGKQVFRRDQAAVDARAPAAAARARTELASLEQRFMDRI
ASGGAQTGPGPAAFAPP
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mRNA from alignment at Contig_126:113719..114069-

Legend: exonpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_13548 ID=mRNA_13548|Name=jgi.p|Trimin1|143084|organism=Tribonema minus UTEX_B_3156 |type=mRNA|length=351bp|location=Sequence derived from alignment at Contig_126:113719..114069- (Tribonema minus UTEX_B_3156 )
GGCGGCGAGCTGCGGCGCGGCAAGTGGACGCAGGAGGAGGACGCGTACGC
GCGGCGCCTCATCGCGGAGTTTAAGGCGGGCCTGCTGCCGCTGACGGACG
GCACGACGCTGCGCACGTTCCTCTCCATCATGCTCAACTGCGACCCGATG
CGCATCTCCAAGAAGTTCACGGGCGCGCACTGCATCGGCAAGCAGGTCTT
CCGGCGCGACCAGGCGGCGGTGGACGCGCGCGCGCCCGCCGCCGCCGCGC
GCGCGCGCACGGAGCTCGCCAGCCTCGAGCAGCGCTTCATGGACCGCATC
GCCTCGGGGGGCGCGCAGACGGGGCCGGGGCCCGCGGCGTTTGCGCCGCC
C
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Coding sequence (CDS) from alignment at Contig_126:113719..114069-

>mRNA_13548 ID=mRNA_13548|Name=jgi.p|Trimin1|143084|organism=Tribonema minus UTEX_B_3156 |type=CDS|length=351bp|location=Sequence derived from alignment at Contig_126:113719..114069- (Tribonema minus UTEX_B_3156 )
GGCGGCGAGCTGCGGCGCGGCAAGTGGACGCAGGAGGAGGACGCGTACGC
GCGGCGCCTCATCGCGGAGTTTAAGGCGGGCCTGCTGCCGCTGACGGACG
GCACGACGCTGCGCACGTTCCTCTCCATCATGCTCAACTGCGACCCGATG
CGCATCTCCAAGAAGTTCACGGGCGCGCACTGCATCGGCAAGCAGGTCTT
CCGGCGCGACCAGGCGGCGGTGGACGCGCGCGCGCCCGCCGCCGCCGCGC
GCGCGCGCACGGAGCTCGCCAGCCTCGAGCAGCGCTTCATGGACCGCATC
GCCTCGGGGGGCGCGCAGACGGGGCCGGGGCCCGCGGCGTTTGCGCCGCC
C
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