mRNA_13473 (mRNA) Tribonema minus UTEX_B_3156

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
Namejgi.p|Trimin1|338329
Unique NamemRNA_13473
TypemRNA
OrganismTribonema minus UTEX_B_3156 (Tribonema minus UTEX_B_3156 )
Homology
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BLAST of jgi.p|Trimin1|338329 vs. uniprot
Match: A0A835YKS5_9STRA (Uncharacterized protein n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A835YKS5_9STRA)

HSP 1 Score: 177 bits (450), Expect = 2.680e-48
Identity = 391/391 (100.00%), Postives = 391/391 (100.00%), Query Frame = 1 
Query:    1 MRAHNVPLSLRHAASPRAAVAETRCDALRRREGRGXXXXXXXXXXXXXXXXXXXXXAGERAAARGVRAAXXXXXXXXXKADKTKPLAALLRANEAKLRARRGXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXQGVRGXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXSADDAVDCARXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXAKRXXXXXXXAQRRVDGGXXXXGXXXXXRGSGSACXXXXXXXXXXXXXXXXXXRARGFRWCGPEDLGAVTCRRCCVPGGNAERPW 1173
            MRAHNVPLSLRHAASPRAAVAETRCDALRRREGRGXXXXXXXXXXXXXXXXXXXXXAGERAAARGVRAAXXXXXXXXXKADKTKPLAALLRANEAKLRARRGXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXQGVRGXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXSADDAVDCARXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXAKRXXXXXXXAQRRVDGGXXXXGXXXXXRGSGSACXXXXXXXXXXXXXXXXXXRARGFRWCGPEDLGAVTCRRCCVPGGNAERPW
Sbjct:    1 MRAHNVPLSLRHAASPRAAVAETRCDALRRREGRGXXXXXXXXXXXXXXXXXXXXXAGERAAARGVRAAXXXXXXXXXKADKTKPLAALLRANEAKLRARRGXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXQGVRGXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXSADDAVDCARXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXAKRXXXXXXXAQRRVDGGXXXXGXXXXXRGSGSACXXXXXXXXXXXXXXXXXXRARGFRWCGPEDLGAVTCRRCCVPGGNAERPW 391
The following BLAST results are available for this feature:
BLAST of jgi.p|Trimin1|338329 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 1
Match NameE-valueIdentityDescription
A0A835YKS5_9STRA2.680e-48100.00Uncharacterized protein n=1 Tax=Tribonema minus Ta... [more]
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
Contig_91contigContig_91:515..2333 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Tribonema minus UTEX_B_31562021-06-17
Properties
Property NameValue
ProteomeIdTrimin1|338329|MIX47092_6_18
Hectar predicted targeting categorymitochondrion
TranscriptId338651
TrackFilteredModels1
ProteinId338329
Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesTypePosition
jgi.p|Trimin1|338329gene_13473Tribonema minus UTEX_B_3156 geneContig_91 515..2333 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
jgi.p|Trimin1|338329Trimin1|338329|MIX47092_6_18Tribonema minus UTEX_B_3156 polypeptideContig_91 515..2333 -


The following exon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
exon_13473_2exon_13473_2Tribonema minus UTEX_B_3156 exonContig_91 515..934 -
exon_13473_1exon_13473_1Tribonema minus UTEX_B_3156 exonContig_91 1578..2333 -


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
CDS_13473CDS_13473Tribonema minus UTEX_B_3156 CDSContig_91 1578..2333 -


Sequences
The following sequences are available for this feature:

spliced messenger RNA

>mRNA_13473 ID=mRNA_13473|Name=jgi.p|Trimin1|338329|organism=Tribonema minus UTEX_B_3156 |type=mRNA|length=1176bp|location=Sequence derived from alignment at Contig_91:515..2333- (Tribonema minus UTEX_B_3156 )|Notes=Excludes all bases but those of type(s): exon.  
ATGCGCGCCCACAATGTGCCACTGTCGCTGAGACATGCTGCATCGCCACG
AGCCGCTGTCGCTGAGACGCGCTGCGACGCGCTGCGCAGGCGAGAGGGCC
GCGGCCAAGGGCGTGCGCGCCGCGAACCGCGCCTAACCCTAACCCTGACC
CTAACCCTAACCCTAAGCGCAGGCGAAAGAGCTGCAGCCAGGGGCGTGCG
CGCCGCGAACCGCGCCGCCGCGCGCGCAAAAGCCAAGGCCGACAAGACCA
AGCCCCTGGCGGCGCTGCTGCGCGCCAACGAGGCGAAGCTCAGAGCGCGG
CGCGGCGGCGGCGGCGACGGCGGCGACGGCGGCGGCGGCGGCGGCATGCG
GCAGATGGCGGCGCTGAAGCTCATGGGCGCGCGGCTGCGCAGGAGAGCAC
GGAGCGGCGGCAGCAGCGCCGCAGCGAGCGTCGGCGGCCAGGGCGTCAGG
GGTGATGACGGCGACGGCGGCGGCGGCGCTAGCGCCAGCGCGAGCATGAG
CGGAGGCAGCGATAGCGCAGGCCTCTATGGTGGCGGCGGCAGCGGCAGCG
GCATGGTCAGCGGCAGTGGCGGCGGCGGTGATGAGGAGAGCAGCTGCGGC
GGCAGCGGCAGCAGCAGCAGCGGCGACAGCGGCGGCGGCAGCGCAGACGA
TGCCGTTGACTGCGCGCGCGACACCGGCGGCGGTGCGCTGGACGCTGCTG
CCGTTGCACGGAAAGCTCAGGCCGCCAAGGACGGCGCTGCCAGCGGAGTG
ATGAAAGCAGCGGACATGGCAAAGGCAGTCGCAGACACCGCCATCATCCC
CGCCGCCGCACGCGAGGCGCACGCCAGAATCGACGCCGCAGCGCGCGCCG
CCGCGGCGCCGGCGCACACCGCCGTCAATGTCGCCGCAGCAGCGCTCAGG
GGCGAGGCCAGGACGGCCGCGAAGCGCGCGCGCCGCCGCGTGCGCGGCGC
GCAGCGCCGCGTTGACGGCGGCGCGCGGCGGCGCGGCGGCGGCGGCGGCG
GGCGCGGCAGCGGCAGCGCGTGCGGCGGCGGCGCGGCGCGCGGCGCAGCT
GCGAAGGAAGGCGGAGGTGCAGCGCGCCGCGCTCGCGGTTTTCGTTGGTG
CGGACCCGAAGACTTGGGGGCGGTGACGTGCCGCCGCTGCTGCGTGCCTG
GGGGCAACGCCGAGCGCCCTTGGTGA
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protein sequence of jgi.p|Trimin1|338329

>Trimin1|338329|MIX47092_6_18 ID=Trimin1|338329|MIX47092_6_18|Name=jgi.p|Trimin1|338329|organism=Tribonema minus UTEX_B_3156 |type=polypeptide|length=392bp
MRAHNVPLSLRHAASPRAAVAETRCDALRRREGRGQGRARREPRLTLTLT
LTLTLSAGERAAARGVRAANRAAARAKAKADKTKPLAALLRANEAKLRAR
RGGGGDGGDGGGGGGMRQMAALKLMGARLRRRARSGGSSAAASVGGQGVR
GDDGDGGGGASASASMSGGSDSAGLYGGGGSGSGMVSGSGGGGDEESSCG
GSGSSSSGDSGGGSADDAVDCARDTGGGALDAAAVARKAQAAKDGAASGV
MKAADMAKAVADTAIIPAAAREAHARIDAAARAAAAPAHTAVNVAAAALR
GEARTAAKRARRRVRGAQRRVDGGARRRGGGGGGRGSGSACGGGAARGAA
AKEGGGAARRARGFRWCGPEDLGAVTCRRCCVPGGNAERPW*
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mRNA from alignment at Contig_91:515..2333-

Legend: polypeptideexonCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_13473 ID=mRNA_13473|Name=jgi.p|Trimin1|338329|organism=Tribonema minus UTEX_B_3156 |type=mRNA|length=1819bp|location=Sequence derived from alignment at Contig_91:515..2333- (Tribonema minus UTEX_B_3156 )
ATGCGCGCCCACAATGTGCCACTGTCGCTGAGACATGCTGCATCGCCACG
AGCCGCTGTCGCTGAGACGCGCTGCGACGCGCTGCGCAGGCGAGAGGGCC
GCGGCCAAGGGCGTGCGCGCCGCGAACCGCGCCTAACCCTAACCCTGACC
CTAACCCTAACCCTAAGCGCAGGCGAAAGAGCTGCAGCCAGGGGCGTGCG
CGCCGCGAACCGCGCCGCCGCGCGCGCAAAAGCCAAGGCCGACAAGACCA
AGCCCCTGGCGGCGCTGCTGCGCGCCAACGAGGCGAAGCTCAGAGCGCGG
CGCGGCGGCGGCGGCGACGGCGGCGACGGCGGCGGCGGCGGCGGCATGCG
GCAGATGGCGGCGCTGAAGCTCATGGGCGCGCGGCTGCGCAGGAGAGCAC
GGAGCGGCGGCAGCAGCGCCGCAGCGAGCGTCGGCGGCCAGGGCGTCAGG
GGTGATGACGGCGACGGCGGCGGCGGCGCTAGCGCCAGCGCGAGCATGAG
CGGAGGCAGCGATAGCGCAGGCCTCTATGGTGGCGGCGGCAGCGGCAGCG
GCATGGTCAGCGGCAGTGGCGGCGGCGGTGATGAGGAGAGCAGCTGCGGC
GGCAGCGGCAGCAGCAGCAGCGGCGACAGCGGCGGCGGCAGCGCAGACGA
TGCCGTTGACTGCGCGCGCGACACCGGCGGCGGTGCGCTGGACGCTGCTG
CCGTTGCACGGAAAGCTCAGGCCGCCAAGGACGGCGCTGCCAGCGGAGTG
ATGAAAGTGAGTGCGTGATCATCAATGCAAACACAAAGGGCAGGGCGGGT
GGGCTTCCTATGCTAGCCCACCAGCTAGTGCTCTGCTGCTTCTATGCTAG
CCTTCCCGTTAGTCCTCTGCTGCAGCTACGTTCCTGCACTTGCTGGACGG
TGCCAGTCGAGAAGGGATGCCACGTGCTGCTTTCTTCCCCTGCACTGTCT
GCAAGAGGACAAGTTTTCGAGGCTTGTCCCCCTTTGATCATCATCTGCCT
CGGTTGCGCGGTGCTGCGCGCAGGCAGCGGCGCGCATGCCGCCGTCATAG
CCGTAAGCACGCGCCATATTGATCTCCATTGAAGATGCTGTATGGGCATA
TGCCCAGCATGCGTGTTGAGGCAAAGCGGGGCGTGCTCTTGCGCTGCCGG
GCAGCAATCGCACAGCTCACGACTACGTTCAGATGTAAACTTGAAGCGCA
GAGAGGGTGCCTGACATCCATGCAGGTGTCTGGTCTTTGCGGGTGCAGGT
CACTGCAGGCCGCAGCAGCTGCAATCACGTAGTGCCGTGCCATGGCACAA
CCACAATCACGCCTGCGCGAGCATATACTCACTTCATCTCTTCGCACGCA
CCTCACCATGGGCGGACGCCAACCCCGCACTTCGTGCCGTCACCCGCAGG
CAGCGGACATGGCAAAGGCAGTCGCAGACACCGCCATCATCCCCGCCGCC
GCACGCGAGGCGCACGCCAGAATCGACGCCGCAGCGCGCGCCGCCGCGGC
GCCGGCGCACACCGCCGTCAATGTCGCCGCAGCAGCGCTCAGGGGCGAGG
CCAGGACGGCCGCGAAGCGCGCGCGCCGCCGCGTGCGCGGCGCGCAGCGC
CGCGTTGACGGCGGCGCGCGGCGGCGCGGCGGCGGCGGCGGCGGGCGCGG
CAGCGGCAGCGCGTGCGGCGGCGGCGCGGCGCGCGGCGCAGCTGCGAAGG
AAGGCGGAGGTGCAGCGCGCCGCGCTCGCGGTTTTCGTTGGTGCGGACCC
GAAGACTTGGGGGCGGTGACGTGCCGCCGCTGCTGCGTGCCTGGGGGCAA
CGCCGAGCGCCCTTGGTGA
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Coding sequence (CDS) from alignment at Contig_91:515..2333-

>mRNA_13473 ID=mRNA_13473|Name=jgi.p|Trimin1|338329|organism=Tribonema minus UTEX_B_3156 |type=CDS|length=1176bp|location=Sequence derived from alignment at Contig_91:515..2333- (Tribonema minus UTEX_B_3156 )
ATGCGCGCCCACAATGTGCCACTGTCGCTGAGACATGCTGCATCGCCACG
AGCCGCTGTCGCTGAGACGCGCTGCGACGCGCTGCGCAGGCGAGAGGGCC
GCGGCCAAGGGCGTGCGCGCCGCGAACCGCGCCTAACCCTAACCCTGACC
CTAACCCTAACCCTAAGCGCAGGCGAAAGAGCTGCAGCCAGGGGCGTGCG
CGCCGCGAACCGCGCCGCCGCGCGCGCAAAAGCCAAGGCCGACAAGACCA
AGCCCCTGGCGGCGCTGCTGCGCGCCAACGAGGCGAAGCTCAGAGCGCGG
CGCGGCGGCGGCGGCGACGGCGGCGACGGCGGCGGCGGCGGCGGCATGCG
GCAGATGGCGGCGCTGAAGCTCATGGGCGCGCGGCTGCGCAGGAGAGCAC
GGAGCGGCGGCAGCAGCGCCGCAGCGAGCGTCGGCGGCCAGGGCGTCAGG
GGTGATGACGGCGACGGCGGCGGCGGCGCTAGCGCCAGCGCGAGCATGAG
CGGAGGCAGCGATAGCGCAGGCCTCTATGGTGGCGGCGGCAGCGGCAGCG
GCATGGTCAGCGGCAGTGGCGGCGGCGGTGATGAGGAGAGCAGCTGCGGC
GGCAGCGGCAGCAGCAGCAGCGGCGACAGCGGCGGCGGCAGCGCAGACGA
TGCCGTTGACTGCGCGCGCGACACCGGCGGCGGTGCGCTGGACGCTGCTG
CCGTTGCACGGAAAGCTCAGGCCGCCAAGGACGGCGCTGCCAGCGGAGTG
ATGAAAGCAGCGGACATGGCAAAGGCAGTCGCAGACACCGCCATCATCCC
CGCCGCCGCACGCGAGGCGCACGCCAGAATCGACGCCGCAGCGCGCGCCG
CCGCGGCGCCGGCGCACACCGCCGTCAATGTCGCCGCAGCAGCGCTCAGG
GGCGAGGCCAGGACGGCCGCGAAGCGCGCGCGCCGCCGCGTGCGCGGCGC
GCAGCGCCGCGTTGACGGCGGCGCGCGGCGGCGCGGCGGCGGCGGCGGCG
GGCGCGGCAGCGGCAGCGCGTGCGGCGGCGGCGCGGCGCGCGGCGCAGCT
GCGAAGGAAGGCGGAGGTGCAGCGCGCCGCGCTCGCGGTTTTCGTTGGTG
CGGACCCGAAGACTTGGGGGCGGTGACGTGCCGCCGCTGCTGCGTGCCTG
GGGGCAACGCCGAGCGCCCTTGGTGA
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