mRNA_13410 (mRNA) Tribonema minus UTEX_B_3156
Overview
Homology
BLAST of jgi.p|Trimin1|137106 vs. uniprot
Match: A0A835ZCB9_9STRA (Uncharacterized protein (Fragment) n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A835ZCB9_9STRA) HSP 1 Score: 566 bits (1459), Expect = 2.890e-204 Identity = 276/276 (100.00%), Postives = 276/276 (100.00%), Query Frame = 1 Query: 1 CTIGRHNSYGLNHIAHLAQSLFPCWSLFLQNMGRERVVLLLDGLSVSDAWGIALLEAMGARLVTAPTDLCGPGHGLVAFPGNGKMWFDGADDANLLRDEVLRRAPNGTVVAEECDEQGCPLRVGILDRAPGVGRHLYYVEAMRAAILQRPREQRAAQLTTVDMAVFDGWSLAQQAAWAARHDVIISPHGNQLTNVAFARRCAVVLELFPPNYIVPDFFTSLALDAGAVSFYLHVLPSQNESTRRGRARERSKQLYYTAEHIMRVWDDMLAARDKCL 828 CTIGRHNSYGLNHIAHLAQSLFPCWSLFLQNMGRERVVLLLDGLSVSDAWGIALLEAMGARLVTAPTDLCGPGHGLVAFPGNGKMWFDGADDANLLRDEVLRRAPNGTVVAEECDEQGCPLRVGILDRAPGVGRHLYYVEAMRAAILQRPREQRAAQLTTVDMAVFDGWSLAQQAAWAARHDVIISPHGNQLTNVAFARRCAVVLELFPPNYIVPDFFTSLALDAGAVSFYLHVLPSQNESTRRGRARERSKQLYYTAEHIMRVWDDMLAARDKCL Sbjct: 1 CTIGRHNSYGLNHIAHLAQSLFPCWSLFLQNMGRERVVLLLDGLSVSDAWGIALLEAMGARLVTAPTDLCGPGHGLVAFPGNGKMWFDGADDANLLRDEVLRRAPNGTVVAEECDEQGCPLRVGILDRAPGVGRHLYYVEAMRAAILQRPREQRAAQLTTVDMAVFDGWSLAQQAAWAARHDVIISPHGNQLTNVAFARRCAVVLELFPPNYIVPDFFTSLALDAGAVSFYLHVLPSQNESTRRGRARERSKQLYYTAEHIMRVWDDMLAARDKCL 276
BLAST of jgi.p|Trimin1|137106 vs. uniprot
Match: F0YMJ1_AURAN (Uncharacterized protein n=1 Tax=Aureococcus anophagefferens TaxID=44056 RepID=F0YMJ1_AURAN) HSP 1 Score: 113 bits (283), Expect = 4.730e-25 Identity = 86/229 (37.55%), Postives = 111/229 (48.47%), Query Frame = 1 Query: 37 HIAHLAQSLFPCWSLFLQNMGRERVVLLLDG--LSVSDAWGIALLEAMGARLVTAPTDLCG--PGHGLV------AFPGNGKMWF-DGADDANLLRDEVLRRAPNGTVVAEECDEQGCPLRVGILDRAPGVGRHLYYVEAMRAAILQRPREQRAAQLTTVDMAVFDGWSLAQQAAWAARHDVIISPHGNQLTNVAFARRCAVVLELFPPNYIVPDFFTSLALDAGAVSF 690 H H Q L PCWSLF + + R VLL G L+ S W +L+AMGA +V + + G P G + G+ +W D A A L L P G LRVG+L+R H + A L R R T D A F+ + A QAAW DV++SPHG QL+N+ FARRC VLELFP ++ +P F+ +LAL AGAV F Sbjct: 82 HWQHAQQVLLPCWSLFSWHPKKARYVLLTGGVGLTASHPWTAFVLDAMGATVVADRSGVAGDCPLEGRLRRKTGTGDAGSEILWLADPAHAAALQAAAGLSPPP-----------PGAGLRVGVLNRRS----HRRW--DADGAFLNRTRAAFP-DATVADEAYFEALAPAAQAAWVHAADVVVSPHGAQLSNLVFARRCTAVLELFPRHFYMPGFYLALALQAGAVPF 292
BLAST of jgi.p|Trimin1|137106 vs. uniprot
Match: A0A835Z935_9STRA (Uncharacterized protein n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A835Z935_9STRA) HSP 1 Score: 112 bits (279), Expect = 2.160e-24 Identity = 85/222 (38.29%), Postives = 102/222 (45.95%), Query Frame = 1 Query: 1 CTIGRHNSYGLNHIAHLAQSLFPCWSLFLQNMGRERVVLLLD-----GLSVSDAWGIALLEAMGARLVT--APTDLCGPGHGLVAFPGNGKMWFDGADDANLLRDEVL-------------------------RRAPNGTVV----AEECDEQGCPLRVGILDRAPGVGRHLYYVEAMRAAILQRPREQRAAQLTTVDMAVFDGWSLAQQAAW--AARHDVI 552 C + N+ GL H+AHLAQS FPCWSLFL + R+ V+LL D G + + L AMGA LVT A LCG G GL G G WFD DA LRD VL R +G + D Q LRVG+L+RA GRHL + A+ AA+ Q V+ AV DG +L QQA W A R D I Sbjct: 224 CVLDSANTKGLPHVAHLAQSFFPCWSLFLGHPRRDCVILLNDSYTSHGARKAGRYATDLAAAMGAHLVTLEATAGLCGTGTGLQGHLGGGMQWFDRGGDAAALRDAVLALPRQRRWSWPPSSWLPLPGQPQQQRSEVSGDATNLNFKLKLDNQAEALRVGLLNRAIASGRHLVHHAAIAAAVAAYHGAH--GQAVEVEHAVMDGRTLRQQAEWFSALRRDRI 443
BLAST of jgi.p|Trimin1|137106 vs. uniprot
Match: A0A7S3JMQ6_9STRA (Hypothetical protein n=1 Tax=Aureoumbra lagunensis TaxID=44058 RepID=A0A7S3JMQ6_9STRA) HSP 1 Score: 103 bits (258), Expect = 1.690e-21 Identity = 78/248 (31.45%), Postives = 121/248 (48.79%), Query Frame = 1 Query: 1 CTIGRHNSYGL--NHIAHLAQSLFPCWSLFLQNMGRERVVLLLDGLSVS-DAWGIALLEAMGARLVTAPTDLCGP----GHGLVAF----PGNGK-------MWFDGADDANLLRDEVLRRAPNGTVVAEECDEQGCPLRVGILDRAPGVGRHLYYVEAMRAAILQRPREQRAAQLTTVDMAVFDGWSLAQQAAWAARHDVIISPHGNQLTNVAFARRCAVVLELFPPNYIVPDFFTSLALDAGAVSF 690 C + R+ S G + H A L CWS + V++L DGL + W ++L AM ++ C G +++ PG + W ADDA L+ ++L ++ + +E+ P R+GIL+R Y + ILQ + ++Q+ F+ S+ +QA W HD+IISPHG QLTN+ +A+ C VVLE+FP Y VP +F++LAL+ GA+SF Sbjct: 244 CVLERNASCGTACEYFQHAAPFLTSCWSFYRAFPHLSPVLVLRDGLYLGRHKWTQSVLAAMDLTVLQHTIPRCSVTARLNKGALSWDQETPGTIRDLGWTPLSWLATADDATALQAKILGKSIQDSCSTSSSEEEKKP-RLGILNRR-------YTGRLPQTIILQVV--EASSQIDFTGEHFFEQASVQEQARWINEHDIIISPHGAQLTNLLWAKPCTVVLEIFPKFYYVPGYFSTLALNVGALSF 481
BLAST of jgi.p|Trimin1|137106 vs. uniprot
Match: A0A7S1D535_CYCTE (Hypothetical protein n=1 Tax=Cyclophora tenuis TaxID=216820 RepID=A0A7S1D535_CYCTE) HSP 1 Score: 96.3 bits (238), Expect = 4.620e-19 Identity = 71/259 (27.41%), Postives = 111/259 (42.86%), Query Frame = 1 Query: 25 YGLNHIAHLAQSLFPCWSLFLQNMGRERVVLLLDGLSVSDAWGIALLEAMGARLVTAPTDLCGPGHGLVAFPG------------------NGKMWFDGADDANLLRDEVLRRAPNGTVVAEECDEQGCPLRVGILDRA-----PGVGRHLYYVEAMRAAILQRPREQRAAQLTTVDMAVFDGWSLAQQAAWAARHDVIISPHGNQLTNVAFARRCAVVLELFPPNYIVPDFFTSLALDAGAVSFYLHVLPSQ--NEST 726 Y +H H+ Q L+ CWS + Q+ R++L + L + +T DL G+ + WF +DA LRD ++ A + E CD + LR+G+L+R G L +E + ++++ +P DG S AQQ + D++ISPHG QLT + F C +LELFP +Y +P FF SLA +AG + +L++ NE+T Sbjct: 140 YRTHHFPHVMQQLYKCWSWWYQHPNSTRLLLT----DTPRFYNETLRSQLRNNFLTGIFDLFANSLGVTIVNNVSHWETYAATPVQRGGWTEPERWFFSLEDAQALRDSLIYVAKSNNPGTEHCDSR---LRIGVLNRKGTRQIDNSGEILQALEDIASSVVLQPS--------------MDGNSFAQQVNFFRSVDIVISPHGAQLTGINFMNVCGCLLELFPRSYFIPGFFGSLASNAGLIYSFLYLSDGDPVNETT 377
BLAST of jgi.p|Trimin1|137106 vs. uniprot
Match: A0A7S2AC66_9DINO (Hypothetical protein n=2 Tax=Alexandrium andersonii TaxID=327968 RepID=A0A7S2AC66_9DINO) HSP 1 Score: 92.4 bits (228), Expect = 5.770e-18 Identity = 85/293 (29.01%), Postives = 128/293 (43.69%), Query Frame = 1 Query: 52 AQSLFPCWSLFLQNMGRERVVLLLDGLSV------SDAWGIALLEAMGARLVTAPTDLCGPGHGLVA----------FPGNGKMWFDGADDANLLRD--------EVLRRAPNGTVVAEECDEQGCPLRVGILDRAPGVGRHLYYVEAMRAAILQRPREQRAA--QLTTVDMAVFDGWSLAQQAAWAARHDVIISPHGNQLTNVAFARRCAVVLELFPPNYIVPDFFTSLALDAGAV--SFYLHVLPSQNESTRRGRAR---ERSKQLYY---TAEHIMRVWDDMLAARDKCL 828 AQ ++ CWS + N + V +L+D + S W LL+ + V P D P L A F G WF DA+ LRD E L + N T ++ + + P R+G L R + ++M LQ +A QL VD F+ S +QA + HDVI+SPHGNQL N+ F C V+E+FP Y +P F S+A ++G + Y H E + G A +R++ + + + H++ D++A R CL Sbjct: 68 AQRIYKCWSWWRHNP--KAVPVLIDDTAKLLREEHSSKWVKGLLDPLREMGVKMPLD---PSAELRAVGVMPKIHPGFDGKEAQWFLHEGDAHELRDRVLGLFKGEALPKLRNKTYLSLSRELRSQP-RIGFLQRK-------LHKKSMTTRRLQGEARMLSALSQLGPVDQGTFEDMSFQEQAEFMNSHDVIVSPHGNQLANIPFLPDCGSVVEIFPKGYYLPGLFGSMAKNSGLDYRAIYTHSGDPVKEGSPVGAATLTLDRTRDVSHICASVSHVVGAVQDLMAKRSACL 347
BLAST of jgi.p|Trimin1|137106 vs. uniprot
Match: F0YH27_AURAN (Uncharacterized protein n=1 Tax=Aureococcus anophagefferens TaxID=44056 RepID=F0YH27_AURAN) HSP 1 Score: 84.3 bits (207), Expect = 7.840e-16 Identity = 50/113 (44.25%), Postives = 65/113 (57.52%), Query Frame = 1 Query: 352 GCPLRVGILDRAPGVGRHLYYVEAMRAAILQRPREQRAAQLTTVDMAVFDGWSLAQQAAWAARHDVIISPHGNQLTNVAFARRCAVVLELFPPNYIVPDFFTSLALDAGAVSF 690 G LRVG+L+R H + A L R R T D A F+ + A QAAW DV++SPHG QL+N+ FAR+C VLELFP ++ +P F+ +LAL AGAV F Sbjct: 59 GAGLRVGVLNRRS----HRRW--DADGAFLNRTRAAFP-DATVADEAYFEALAPAAQAAWVHAADVVVSPHGAQLSNLVFARKCTAVLELFPRHFYMPGFYLALALQAGAVPF 164
BLAST of jgi.p|Trimin1|137106 vs. uniprot
Match: A0A7S3AN44_9EUKA (Hypothetical protein n=1 Tax=Haptolina ericina TaxID=156174 RepID=A0A7S3AN44_9EUKA) HSP 1 Score: 85.9 bits (211), Expect = 1.820e-15 Identity = 76/249 (30.52%), Postives = 109/249 (43.78%), Query Frame = 1 Query: 1 CTIGRHNSYGLNHIAHLAQSLFPCWSLFLQNMGRERVVLLLD-------GLSVSDAWGIALLEAMGARLVTAPTDLC---------GPGHGLVAFPGNGKMWFDGADDANLLRDEVLRRAPNGTVVAEECDEQGCPLRVGILDRAPGVGRHLYYVEAMRAAILQRPREQRAAQLTTVDMAVFDGWSLAQQAAWAARHDVIISPHGNQLTNVAFARRCAVVLELFPPNYIVPDFFTSLALDAGAVSFYLH 699 C H Y LN + H Q L+ CWS F +R +L L GL+ W L+ +M A C H +PG + +F + A L V +++P A + +RVGIL+R G R + EA A + + E ++D D +LA+Q HD+IISPHG Q +N AFA C V+LELFP Y +P + LA + GA +FY++ Sbjct: 41 CAFQLHGDY-LN-VGHSGQVLYRCWSWFRTMRTAKRQLLELSRPASHWPGLNARP-WQADLIASMNATYTRKMPSACVAVWKLRSSATPHDPFLYPGFTEAFFTCPEAAWELASAVTKQSPGYRSRAVHLN-----VRVGILNRLGGK-RPWIHSEAFIALVRREHPE------VSIDEWTMDNLTLAEQVKAIRSHDIIISPHGAQNSNFAFAVPCTVLLELFPAQYFLP-MYLDLAGEVGARTFYMY 273
BLAST of jgi.p|Trimin1|137106 vs. uniprot
Match: A0A1Z5JW14_FISSO (Uncharacterized protein n=1 Tax=Fistulifera solaris TaxID=1519565 RepID=A0A1Z5JW14_FISSO) HSP 1 Score: 84.7 bits (208), Expect = 8.940e-15 Identity = 68/234 (29.06%), Postives = 111/234 (47.44%), Query Frame = 1 Query: 34 NHIAHLAQSLFPCWSLFLQNMGRERVVLLLDGLSVS----DAWGIALLEAM--GARLVTAPTDLCGPGH-------GLVAFPGNGKMWFDGADDANLLRDEVLRRAPNGTVVAEECDEQGCPLRVGILDRAPGVGRHLYYVEAMRAAILQRPREQRAAQLTTVDMAVFDGWSLAQQAAWAARHDVIISPHGNQLTNVAFARRCAVVLELFPPNYIVPDFFTSLALDAGAVSFYL 696 +H+ H QS++ CW+L+ Q+ G +V D + + D + L+EAM + TD + + + +F DDA + +L+ + T+ + C + +RVGIL+R P GR +E R + Q R VD FD + +Q AW A HD+I++ HG Q T + F +C +LE+FP +Y VPD+F +L+ D+ V Y+ Sbjct: 725 HHLPHAMQSVYACWTLWEQHGGHPVLVGPQDHVGFNQTFKDRFMKGLVEAMIDYKNVTIMATDQVDTTELESAVKLEIWGYHWGSRAFFMRRDDAWKWTEHILQ---SQTIARDTCQDV---VRVGILNRRPANGRS---IENSRDIMDQLHRV--FGDKIQVDQIFFDLSTFQEQIAWFASHDIILTGHGAQETGMPFMPKCGAILEIFPFDYFVPDYFAALS-DSTHVRHYI 946
BLAST of jgi.p|Trimin1|137106 vs. uniprot
Match: B7G7E9_PHATC (Predicted protein n=1 Tax=Phaeodactylum tricornutum (strain CCAP 1055/1) TaxID=556484 RepID=B7G7E9_PHATC) HSP 1 Score: 77.0 bits (188), Expect = 2.110e-12 Identity = 65/243 (26.75%), Postives = 103/243 (42.39%), Query Frame = 1 Query: 37 HIAHLAQSLFPCWSLFLQNMGRERVVLL-------LDGL--SVSDAWGIALLEAMGARLVTAPTDLCGPGHGLVAFPGNGKMWFDGADDANLLRDEVLR-------------RAPNGTVVAEECDEQGCPLRVGILDRAPGVGRHLYYVEAMRAAILQRPREQRAAQLTTVDMAVFDGWSLAQQAAWAARHDVIISPHGNQLTNVAFARRCAVVLELFPPNYIVPDFFTSLALDAGAVSFYLH 699 H H Q L+ C S +L N ++ ++ + G ++ D + + ++ V P G F N DA +LRD +L R P+ VV + +GIL+R+ GR + +R AI +R TV M FD + QQ + + D+++SPHG QLT++ F CA ++E FP Y+VP+FF +LA + YL+ Sbjct: 116 HFPHAMQQLYRCHSWWLANPDKQPWLVFKSPQNAFVGGFLTALRDVFNVTIVRLRHNLKVVRPKVEYAFGS---PFAANFGYAMQSPRDAIVLRDSILHHYDLLSDRTGGCHRKPS--VVGASVENLMREPSIGILNRSQRTGRRFFSDSLLRDAIRERFG-------LTVHMMTFDDKNFLQQVQFMSETDILLSPHGAQLTSIPFLPPCARMMEFFPVGYLVPEFFGTLAAASDVSYAYLY 346 The following BLAST results are available for this feature:
BLAST of jgi.p|Trimin1|137106 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90) Total hits: 25
Pagesback to topAlignments
The following features are aligned
Analyses
This mRNA is derived from or has results from the following analyses
Properties
Relationships
This mRNA is a part of the following gene feature(s):
The following polypeptide feature(s) derives from this mRNA:
The following exon feature(s) are a part of this mRNA:
The following CDS feature(s) are a part of this mRNA:
Sequences
The following sequences are available for this feature:
spliced messenger RNA >mRNA_13410 ID=mRNA_13410|Name=jgi.p|Trimin1|137106|organism=Tribonema minus UTEX_B_3156 |type=mRNA|length=828bp|location=Sequence derived from alignment at Contig_141:384600..385469- (Tribonema minus UTEX_B_3156 )|Notes=Excludes all bases but those of type(s): exon. TGCACCATAGGCAGACACAACTCTTATGGTTTGAACCACATCGCACACCTback to top protein sequence of jgi.p|Trimin1|137106 >Trimin1|137106|gw1.141.37.1 ID=Trimin1|137106|gw1.141.37.1|Name=jgi.p|Trimin1|137106|organism=Tribonema minus UTEX_B_3156 |type=polypeptide|length=276bp CTIGRHNSYGLNHIAHLAQSLFPCWSLFLQNMGRERVVLLLDGLSVSDAWback to top mRNA from alignment at Contig_141:384600..385469- Legend: polypeptideexonCDS Hold the cursor over a type above to highlight its positions in the sequence below.>mRNA_13410 ID=mRNA_13410|Name=jgi.p|Trimin1|137106|organism=Tribonema minus UTEX_B_3156 |type=mRNA|length=870bp|location=Sequence derived from alignment at Contig_141:384600..385469- (Tribonema minus UTEX_B_3156 )back to top Coding sequence (CDS) from alignment at Contig_141:384600..385469- >mRNA_13410 ID=mRNA_13410|Name=jgi.p|Trimin1|137106|organism=Tribonema minus UTEX_B_3156 |type=CDS|length=828bp|location=Sequence derived from alignment at Contig_141:384600..385469- (Tribonema minus UTEX_B_3156 )back to top |