mRNA_13389 (mRNA) Tribonema minus UTEX_B_3156
Overview
Homology
BLAST of jgi.p|Trimin1|131241 vs. uniprot
Match: A0A835ZAF5_9STRA (Uncharacterized protein (Fragment) n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A835ZAF5_9STRA) HSP 1 Score: 218 bits (555), Expect = 4.280e-72 Identity = 104/104 (100.00%), Postives = 104/104 (100.00%), Query Frame = 1 Query: 1 LYAMQHYFHKMANGTFLELGALAGVRLSNTVSLESVMGWRGVLIEASPANYARLVGNRPDAICVHAAVCGDDAQVHYVELDQEAVKGIYEFMAPSFVQHWHPKL 312 LYAMQHYFHKMANGTFLELGALAGVRLSNTVSLESVMGWRGVLIEASPANYARLVGNRPDAICVHAAVCGDDAQVHYVELDQEAVKGIYEFMAPSFVQHWHPKL Sbjct: 1 LYAMQHYFHKMANGTFLELGALAGVRLSNTVSLESVMGWRGVLIEASPANYARLVGNRPDAICVHAAVCGDDAQVHYVELDQEAVKGIYEFMAPSFVQHWHPKL 104
BLAST of jgi.p|Trimin1|131241 vs. uniprot
Match: A0A836CNA3_9STRA (Methyltransf_21 domain-containing protein n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A836CNA3_9STRA) HSP 1 Score: 167 bits (423), Expect = 1.590e-50 Identity = 76/99 (76.77%), Postives = 88/99 (88.89%), Query Frame = 1 Query: 10 MQHYFHKMANGTFLELGALAGVRLSNTVSLESVMGWRGVLIEASPANYARLVGNRPDAICVHAAVCGDDAQVHYVELDQEAVKGIYEFMAPSFVQHWHP 306 MQH+FH MANGTFLELGAL G+ +SNT SLE MGWRG+LIEASPAN+ RLVGNRP+AI +H+AVC +DAQVHY+ELD +AVKGIYEFMAPSF+Q WHP Sbjct: 1 MQHFFHNMANGTFLELGALDGLSVSNTKSLEDFMGWRGILIEASPANHVRLVGNRPNAIRMHSAVCREDAQVHYMELDDQAVKGIYEFMAPSFMQRWHP 99
BLAST of jgi.p|Trimin1|131241 vs. uniprot
Match: L1II55_GUITC (Uncharacterized protein (Fragment) n=1 Tax=Guillardia theta (strain CCMP2712) TaxID=905079 RepID=L1II55_GUITC) HSP 1 Score: 125 bits (314), Expect = 2.120e-35 Identity = 55/100 (55.00%), Postives = 73/100 (73.00%), Query Frame = 1 Query: 4 YAMQHYFHKMANGTFLELGALAGVRLSNTVSLESVMGWRGVLIEASPANYARLVGNRPDAICVHAAVCGDDAQVHYVELDQEAVKGIYEFMAPSFVQHWH 303 +A H+F ++GTFLELGAL G SN+ E MGWRG+LIEA P N+ +LV NRPD + VHAA+C ++ +VHY+ AV+GIYEFMAPSF+++WH Sbjct: 1 FAWSHFFRNSSSGTFLELGALDGSTYSNSFYFERAMGWRGILIEADPDNFRQLVKNRPDQVLVHAAICKEEREVHYMTSGGPAVRGIYEFMAPSFLRYWH 100
BLAST of jgi.p|Trimin1|131241 vs. uniprot
Match: I0YI85_COCSC (Uncharacterized protein (Fragment) n=1 Tax=Coccomyxa subellipsoidea (strain C-169) TaxID=574566 RepID=I0YI85_COCSC) HSP 1 Score: 110 bits (274), Expect = 2.830e-29 Identity = 50/103 (48.54%), Postives = 73/103 (70.87%), Query Frame = 1 Query: 4 YAMQHYFHKMANGTFLELGALAGVRLSNTVSLESVMGWRGVLIEASPANYARLVGNRPDAICVHAAVCGDDAQVHYVELDQEAVKGIYEFMAPSFVQHWHPKL 312 YA++++F + +GT+LE+GA GV+ SNT+ L GWRG+LIE +P +Y+ LV NRPD +CV+AA+C + + VH+VE A GIYEFM+ SF+ W+ L Sbjct: 1 YAVENFFRGLDHGTYLEMGAFDGVKFSNTLHLRKAHGWRGLLIEPNPTSYSALVRNRPDDVCVNAAICANPSLVHFVEAGG-ATAGIYEFMSASFLDTWYKGL 102
BLAST of jgi.p|Trimin1|131241 vs. uniprot
Match: A0A7S0X1M7_9CHLO (Hypothetical protein n=1 Tax=Chlamydomonas leiostraca TaxID=1034604 RepID=A0A7S0X1M7_9CHLO) HSP 1 Score: 111 bits (277), Expect = 6.700e-28 Identity = 53/105 (50.48%), Postives = 68/105 (64.76%), Query Frame = 1 Query: 4 YAMQHYFHKMANGTFLELGALAGVRLSNTVSLESVMGWRGVLIEASPANYARLVGNRPDAICVHAAVCGDDAQVHYVELD--QEAVKGIYEFMAPSFVQHWHPKL 312 Y +F +M GT+LE+G L G+ SNT+SL MGWRGVL+EASP +YA+L NRPD C++AAVC + A VHY+ AV GIYEFM F + W P + Sbjct: 46 YTYTTFFDRMVAGTYLEIGGLDGIFFSNTLSLNKYMGWRGVLVEASPESYAKLARNRPDDFCINAAVCKEPATVHYLVHGGGHPAVNGIYEFMPEGFRKQWFPNV 150
BLAST of jgi.p|Trimin1|131241 vs. uniprot
Match: A0A383WPX8_TETOB (Methyltransf_21 domain-containing protein n=1 Tax=Tetradesmus obliquus TaxID=3088 RepID=A0A383WPX8_TETOB) HSP 1 Score: 106 bits (264), Expect = 2.300e-26 Identity = 49/103 (47.57%), Postives = 71/103 (68.93%), Query Frame = 1 Query: 4 YAMQHYFHKMANGTFLELGALAGVRLSNTVSLESVMGWRGVLIEASPANYARLVGNRPDAICVHAAVCGDDAQVHYVELD---QEAVKGIYEFMAPSFVQHWH 303 +A ++F+K G++LE+G L GV LSNT+ + + WRG+LIE SP ++++LV NRP+ I VHAA+CG+ VH+V+ AV GIYEFM+P F + WH Sbjct: 17 FAYSNFFYKHVGGSYLEVGGLDGVTLSNTMWMHHALDWRGLLIEGSPISFSKLVKNRPNDINVHAAICGNRTIVHFVDEQIAFGSAVSGIYEFMSPKFRERWH 119
BLAST of jgi.p|Trimin1|131241 vs. uniprot
Match: L1I6N9_GUITC (Methyltransf_21 domain-containing protein (Fragment) n=1 Tax=Guillardia theta (strain CCMP2712) TaxID=905079 RepID=L1I6N9_GUITC) HSP 1 Score: 105 bits (262), Expect = 5.500e-26 Identity = 49/89 (55.06%), Postives = 63/89 (70.79%), Query Frame = 1 Query: 37 NGTFLELGALAGVRLSNTVSLESVMGWRGVLIEASPANYARLVGNRPDAICVHAAVCGDDAQVHYVELDQEAVKGIYEFMAPSFVQHWH 303 NGTF+ELGAL G+ SNT + E GW G+LIEA P+N+A+LV +RP I VHAAVC + + V YV AVKGI +FM+P F++ WH Sbjct: 44 NGTFVELGALDGLTFSNTHAFEKSFGWHGLLIEADPSNFAKLVSHRPSQILVHAAVCSNLSVVDYVTSGHPAVKGILQFMSPQFLRGWH 132
BLAST of jgi.p|Trimin1|131241 vs. uniprot
Match: C1NAB5_MICPC (Predicted protein n=1 Tax=Micromonas pusilla (strain CCMP1545) TaxID=564608 RepID=C1NAB5_MICPC) HSP 1 Score: 99.8 bits (247), Expect = 2.030e-22 Identity = 49/102 (48.04%), Postives = 64/102 (62.75%), Query Frame = 1 Query: 19 YFHKMANGTFLELGALAGVRLSNTVSLESVMGWRGVLIEASPANYARLVGNRPDAICVHAAVCGDDAQVHYVE----LDQEAVKGIYEFMAPSFVQHWHPKL 312 +F + GT++ELG L GV+ SNT + WRGVLIE SP N+ARL NRP +AAVC +QVH++E + A G+ EFMAPSFV+HW +L Sbjct: 109 FFKGVCEGTYVELGGLDGVKFSNTHMFHHGLRWRGVLIEPSPRNFARLTENRPRDELYNAAVCAQHSQVHFIEALNSVSNGASSGVLEFMAPSFVEHWKDRL 210
BLAST of jgi.p|Trimin1|131241 vs. uniprot
Match: A0A7R9VGC5_9CHLO (Hypothetical protein n=1 Tax=Chlamydomonas euryale TaxID=1486919 RepID=A0A7R9VGC5_9CHLO) HSP 1 Score: 96.7 bits (239), Expect = 3.780e-22 Identity = 47/96 (48.96%), Postives = 62/96 (64.58%), Query Frame = 1 Query: 19 YFHKMANGTFLELGALAGVRLSNTVSLESVMGWRGVLIEASPANYARLVGNRPDAICVHAAVCGDDAQVHYVELDQEAVKGIYEFMAPSFVQHWHP 306 YF NGTFLE+GAL G+ LSNT +LE + W GVLIEA+P +Y L NRP AI + +AVC D V + + + + GI+EFM+ F Q W+P Sbjct: 81 YFCGAENGTFLEMGALDGILLSNTYALEQGLNWGGVLIEANPVSYRALARNRPSAITIRSAVCATDNIVTFCQSSPQ-ISGIWEFMSEGFKQQWYP 175
BLAST of jgi.p|Trimin1|131241 vs. uniprot
Match: A0A7S1FYX5_9STRA (Hypothetical protein (Fragment) n=1 Tax=Corethron hystrix TaxID=216773 RepID=A0A7S1FYX5_9STRA) HSP 1 Score: 96.3 bits (238), Expect = 1.100e-21 Identity = 49/101 (48.51%), Postives = 62/101 (61.39%), Query Frame = 1 Query: 19 YFHKMANGTFLELGALAGVRLSNTVSLESVMGWRGVLIEASPANYARLVGNRPDAIC-VHAAVCGDDAQVHYV--ELDQEAVKGIYEFMAPSFVQHWHPKL 312 YF+ + NG ++E+G L GVR SN+ W+G+LIE SP N+ARL NRP+ I VHA VC VHYV E + AV GI EFM P+F Q W P + Sbjct: 90 YFNGICNGKYIEMGGLDGVRFSNSYVFNKDFDWKGILIEVSPKNFARLETNRPNEIANVHAGVCAKAHDVHYVTAEKGKTAVNGILEFMDPNFRQRWWPDI 190 The following BLAST results are available for this feature:
BLAST of jgi.p|Trimin1|131241 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90) Total hits: 25
Pagesback to topAlignments
The following features are aligned
Analyses
This mRNA is derived from or has results from the following analyses
Properties
Relationships
This mRNA is a part of the following gene feature(s):
The following exon feature(s) are a part of this mRNA:
The following CDS feature(s) are a part of this mRNA:
The following polypeptide feature(s) derives from this mRNA:
Sequences
The following sequences are available for this feature:
spliced messenger RNA >mRNA_13389 ID=mRNA_13389|Name=jgi.p|Trimin1|131241|organism=Tribonema minus UTEX_B_3156 |type=mRNA|length=312bp|location=Sequence derived from alignment at Contig_141:263476..263787- (Tribonema minus UTEX_B_3156 )|Notes=Excludes all bases but those of type(s): exon. CTTTATGCAATGCAGCACTACTTCCACAAGATGGCCAACGGCACCTTCCTback to top protein sequence of jgi.p|Trimin1|131241 >Trimin1|131241|gw1.141.9.1 ID=Trimin1|131241|gw1.141.9.1|Name=jgi.p|Trimin1|131241|organism=Tribonema minus UTEX_B_3156 |type=polypeptide|length=104bp LYAMQHYFHKMANGTFLELGALAGVRLSNTVSLESVMGWRGVLIEASPANback to top mRNA from alignment at Contig_141:263476..263787- Legend: exonpolypeptideCDS Hold the cursor over a type above to highlight its positions in the sequence below.>mRNA_13389 ID=mRNA_13389|Name=jgi.p|Trimin1|131241|organism=Tribonema minus UTEX_B_3156 |type=mRNA|length=312bp|location=Sequence derived from alignment at Contig_141:263476..263787- (Tribonema minus UTEX_B_3156 )back to top Coding sequence (CDS) from alignment at Contig_141:263476..263787- >mRNA_13389 ID=mRNA_13389|Name=jgi.p|Trimin1|131241|organism=Tribonema minus UTEX_B_3156 |type=CDS|length=312bp|location=Sequence derived from alignment at Contig_141:263476..263787- (Tribonema minus UTEX_B_3156 )back to top |