mRNA_13389 (mRNA) Tribonema minus UTEX_B_3156

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
Namejgi.p|Trimin1|131241
Unique NamemRNA_13389
TypemRNA
OrganismTribonema minus UTEX_B_3156 (Tribonema minus UTEX_B_3156 )
Homology
BLAST of jgi.p|Trimin1|131241 vs. uniprot
Match: A0A835ZAF5_9STRA (Uncharacterized protein (Fragment) n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A835ZAF5_9STRA)

HSP 1 Score: 218 bits (555), Expect = 4.280e-72
Identity = 104/104 (100.00%), Postives = 104/104 (100.00%), Query Frame = 1
Query:    1 LYAMQHYFHKMANGTFLELGALAGVRLSNTVSLESVMGWRGVLIEASPANYARLVGNRPDAICVHAAVCGDDAQVHYVELDQEAVKGIYEFMAPSFVQHWHPKL 312
            LYAMQHYFHKMANGTFLELGALAGVRLSNTVSLESVMGWRGVLIEASPANYARLVGNRPDAICVHAAVCGDDAQVHYVELDQEAVKGIYEFMAPSFVQHWHPKL
Sbjct:    1 LYAMQHYFHKMANGTFLELGALAGVRLSNTVSLESVMGWRGVLIEASPANYARLVGNRPDAICVHAAVCGDDAQVHYVELDQEAVKGIYEFMAPSFVQHWHPKL 104          
BLAST of jgi.p|Trimin1|131241 vs. uniprot
Match: A0A836CNA3_9STRA (Methyltransf_21 domain-containing protein n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A836CNA3_9STRA)

HSP 1 Score: 167 bits (423), Expect = 1.590e-50
Identity = 76/99 (76.77%), Postives = 88/99 (88.89%), Query Frame = 1
Query:   10 MQHYFHKMANGTFLELGALAGVRLSNTVSLESVMGWRGVLIEASPANYARLVGNRPDAICVHAAVCGDDAQVHYVELDQEAVKGIYEFMAPSFVQHWHP 306
            MQH+FH MANGTFLELGAL G+ +SNT SLE  MGWRG+LIEASPAN+ RLVGNRP+AI +H+AVC +DAQVHY+ELD +AVKGIYEFMAPSF+Q WHP
Sbjct:    1 MQHFFHNMANGTFLELGALDGLSVSNTKSLEDFMGWRGILIEASPANHVRLVGNRPNAIRMHSAVCREDAQVHYMELDDQAVKGIYEFMAPSFMQRWHP 99          
BLAST of jgi.p|Trimin1|131241 vs. uniprot
Match: L1II55_GUITC (Uncharacterized protein (Fragment) n=1 Tax=Guillardia theta (strain CCMP2712) TaxID=905079 RepID=L1II55_GUITC)

HSP 1 Score: 125 bits (314), Expect = 2.120e-35
Identity = 55/100 (55.00%), Postives = 73/100 (73.00%), Query Frame = 1
Query:    4 YAMQHYFHKMANGTFLELGALAGVRLSNTVSLESVMGWRGVLIEASPANYARLVGNRPDAICVHAAVCGDDAQVHYVELDQEAVKGIYEFMAPSFVQHWH 303
            +A  H+F   ++GTFLELGAL G   SN+   E  MGWRG+LIEA P N+ +LV NRPD + VHAA+C ++ +VHY+     AV+GIYEFMAPSF+++WH
Sbjct:    1 FAWSHFFRNSSSGTFLELGALDGSTYSNSFYFERAMGWRGILIEADPDNFRQLVKNRPDQVLVHAAICKEEREVHYMTSGGPAVRGIYEFMAPSFLRYWH 100          
BLAST of jgi.p|Trimin1|131241 vs. uniprot
Match: I0YI85_COCSC (Uncharacterized protein (Fragment) n=1 Tax=Coccomyxa subellipsoidea (strain C-169) TaxID=574566 RepID=I0YI85_COCSC)

HSP 1 Score: 110 bits (274), Expect = 2.830e-29
Identity = 50/103 (48.54%), Postives = 73/103 (70.87%), Query Frame = 1
Query:    4 YAMQHYFHKMANGTFLELGALAGVRLSNTVSLESVMGWRGVLIEASPANYARLVGNRPDAICVHAAVCGDDAQVHYVELDQEAVKGIYEFMAPSFVQHWHPKL 312
            YA++++F  + +GT+LE+GA  GV+ SNT+ L    GWRG+LIE +P +Y+ LV NRPD +CV+AA+C + + VH+VE    A  GIYEFM+ SF+  W+  L
Sbjct:    1 YAVENFFRGLDHGTYLEMGAFDGVKFSNTLHLRKAHGWRGLLIEPNPTSYSALVRNRPDDVCVNAAICANPSLVHFVEAGG-ATAGIYEFMSASFLDTWYKGL 102          
BLAST of jgi.p|Trimin1|131241 vs. uniprot
Match: A0A7S0X1M7_9CHLO (Hypothetical protein n=1 Tax=Chlamydomonas leiostraca TaxID=1034604 RepID=A0A7S0X1M7_9CHLO)

HSP 1 Score: 111 bits (277), Expect = 6.700e-28
Identity = 53/105 (50.48%), Postives = 68/105 (64.76%), Query Frame = 1
Query:    4 YAMQHYFHKMANGTFLELGALAGVRLSNTVSLESVMGWRGVLIEASPANYARLVGNRPDAICVHAAVCGDDAQVHYVELD--QEAVKGIYEFMAPSFVQHWHPKL 312
            Y    +F +M  GT+LE+G L G+  SNT+SL   MGWRGVL+EASP +YA+L  NRPD  C++AAVC + A VHY+       AV GIYEFM   F + W P +
Sbjct:   46 YTYTTFFDRMVAGTYLEIGGLDGIFFSNTLSLNKYMGWRGVLVEASPESYAKLARNRPDDFCINAAVCKEPATVHYLVHGGGHPAVNGIYEFMPEGFRKQWFPNV 150          
BLAST of jgi.p|Trimin1|131241 vs. uniprot
Match: A0A383WPX8_TETOB (Methyltransf_21 domain-containing protein n=1 Tax=Tetradesmus obliquus TaxID=3088 RepID=A0A383WPX8_TETOB)

HSP 1 Score: 106 bits (264), Expect = 2.300e-26
Identity = 49/103 (47.57%), Postives = 71/103 (68.93%), Query Frame = 1
Query:    4 YAMQHYFHKMANGTFLELGALAGVRLSNTVSLESVMGWRGVLIEASPANYARLVGNRPDAICVHAAVCGDDAQVHYVELD---QEAVKGIYEFMAPSFVQHWH 303
            +A  ++F+K   G++LE+G L GV LSNT+ +   + WRG+LIE SP ++++LV NRP+ I VHAA+CG+   VH+V+       AV GIYEFM+P F + WH
Sbjct:   17 FAYSNFFYKHVGGSYLEVGGLDGVTLSNTMWMHHALDWRGLLIEGSPISFSKLVKNRPNDINVHAAICGNRTIVHFVDEQIAFGSAVSGIYEFMSPKFRERWH 119          
BLAST of jgi.p|Trimin1|131241 vs. uniprot
Match: L1I6N9_GUITC (Methyltransf_21 domain-containing protein (Fragment) n=1 Tax=Guillardia theta (strain CCMP2712) TaxID=905079 RepID=L1I6N9_GUITC)

HSP 1 Score: 105 bits (262), Expect = 5.500e-26
Identity = 49/89 (55.06%), Postives = 63/89 (70.79%), Query Frame = 1
Query:   37 NGTFLELGALAGVRLSNTVSLESVMGWRGVLIEASPANYARLVGNRPDAICVHAAVCGDDAQVHYVELDQEAVKGIYEFMAPSFVQHWH 303
            NGTF+ELGAL G+  SNT + E   GW G+LIEA P+N+A+LV +RP  I VHAAVC + + V YV     AVKGI +FM+P F++ WH
Sbjct:   44 NGTFVELGALDGLTFSNTHAFEKSFGWHGLLIEADPSNFAKLVSHRPSQILVHAAVCSNLSVVDYVTSGHPAVKGILQFMSPQFLRGWH 132          
BLAST of jgi.p|Trimin1|131241 vs. uniprot
Match: C1NAB5_MICPC (Predicted protein n=1 Tax=Micromonas pusilla (strain CCMP1545) TaxID=564608 RepID=C1NAB5_MICPC)

HSP 1 Score: 99.8 bits (247), Expect = 2.030e-22
Identity = 49/102 (48.04%), Postives = 64/102 (62.75%), Query Frame = 1
Query:   19 YFHKMANGTFLELGALAGVRLSNTVSLESVMGWRGVLIEASPANYARLVGNRPDAICVHAAVCGDDAQVHYVE----LDQEAVKGIYEFMAPSFVQHWHPKL 312
            +F  +  GT++ELG L GV+ SNT      + WRGVLIE SP N+ARL  NRP     +AAVC   +QVH++E    +   A  G+ EFMAPSFV+HW  +L
Sbjct:  109 FFKGVCEGTYVELGGLDGVKFSNTHMFHHGLRWRGVLIEPSPRNFARLTENRPRDELYNAAVCAQHSQVHFIEALNSVSNGASSGVLEFMAPSFVEHWKDRL 210          
BLAST of jgi.p|Trimin1|131241 vs. uniprot
Match: A0A7R9VGC5_9CHLO (Hypothetical protein n=1 Tax=Chlamydomonas euryale TaxID=1486919 RepID=A0A7R9VGC5_9CHLO)

HSP 1 Score: 96.7 bits (239), Expect = 3.780e-22
Identity = 47/96 (48.96%), Postives = 62/96 (64.58%), Query Frame = 1
Query:   19 YFHKMANGTFLELGALAGVRLSNTVSLESVMGWRGVLIEASPANYARLVGNRPDAICVHAAVCGDDAQVHYVELDQEAVKGIYEFMAPSFVQHWHP 306
            YF    NGTFLE+GAL G+ LSNT +LE  + W GVLIEA+P +Y  L  NRP AI + +AVC  D  V + +   + + GI+EFM+  F Q W+P
Sbjct:   81 YFCGAENGTFLEMGALDGILLSNTYALEQGLNWGGVLIEANPVSYRALARNRPSAITIRSAVCATDNIVTFCQSSPQ-ISGIWEFMSEGFKQQWYP 175          
BLAST of jgi.p|Trimin1|131241 vs. uniprot
Match: A0A7S1FYX5_9STRA (Hypothetical protein (Fragment) n=1 Tax=Corethron hystrix TaxID=216773 RepID=A0A7S1FYX5_9STRA)

HSP 1 Score: 96.3 bits (238), Expect = 1.100e-21
Identity = 49/101 (48.51%), Postives = 62/101 (61.39%), Query Frame = 1
Query:   19 YFHKMANGTFLELGALAGVRLSNTVSLESVMGWRGVLIEASPANYARLVGNRPDAIC-VHAAVCGDDAQVHYV--ELDQEAVKGIYEFMAPSFVQHWHPKL 312
            YF+ + NG ++E+G L GVR SN+        W+G+LIE SP N+ARL  NRP+ I  VHA VC     VHYV  E  + AV GI EFM P+F Q W P +
Sbjct:   90 YFNGICNGKYIEMGGLDGVRFSNSYVFNKDFDWKGILIEVSPKNFARLETNRPNEIANVHAGVCAKAHDVHYVTAEKGKTAVNGILEFMDPNFRQRWWPDI 190          
The following BLAST results are available for this feature:
BLAST of jgi.p|Trimin1|131241 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
A0A835ZAF5_9STRA4.280e-72100.00Uncharacterized protein (Fragment) n=1 Tax=Tribone... [more]
A0A836CNA3_9STRA1.590e-5076.77Methyltransf_21 domain-containing protein n=1 Tax=... [more]
L1II55_GUITC2.120e-3555.00Uncharacterized protein (Fragment) n=1 Tax=Guillar... [more]
I0YI85_COCSC2.830e-2948.54Uncharacterized protein (Fragment) n=1 Tax=Coccomy... [more]
A0A7S0X1M7_9CHLO6.700e-2850.48Hypothetical protein n=1 Tax=Chlamydomonas leiostr... [more]
A0A383WPX8_TETOB2.300e-2647.57Methyltransf_21 domain-containing protein n=1 Tax=... [more]
L1I6N9_GUITC5.500e-2655.06Methyltransf_21 domain-containing protein (Fragmen... [more]
C1NAB5_MICPC2.030e-2248.04Predicted protein n=1 Tax=Micromonas pusilla (stra... [more]
A0A7R9VGC5_9CHLO3.780e-2248.96Hypothetical protein n=1 Tax=Chlamydomonas euryale... [more]
A0A7S1FYX5_9STRA1.100e-2148.51Hypothetical protein (Fragment) n=1 Tax=Corethron ... [more]

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
Contig_141contigContig_141:263476..263787 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Tribonema minus UTEX_B_31562021-06-17
Properties
Property NameValue
ProteomeIdTrimin1|131241|gw1.141.9.1
Max annot lvl2759|Eukaryota
EggNOG OGs2E2KV@1|root,2S9U3@2759|Eukaryota
Evalue3.48e-36
Seed ortholog55529.EKX35933
Hectar predicted targeting categoryother localisation
TranscriptId131563
TrackFilteredModels1
ProteinId131241
Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesTypePosition
jgi.p|Trimin1|131241gene_13389Tribonema minus UTEX_B_3156 geneContig_141 263476..263787 -


The following exon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
exon_13389_1exon_13389_1Tribonema minus UTEX_B_3156 exonContig_141 263476..263787 -


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
CDS_13389CDS_13389Tribonema minus UTEX_B_3156 CDSContig_141 263476..263787 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
jgi.p|Trimin1|131241Trimin1|131241|gw1.141.9.1Tribonema minus UTEX_B_3156 polypeptideContig_141 263476..263787 -


Sequences
The following sequences are available for this feature:

spliced messenger RNA

>mRNA_13389 ID=mRNA_13389|Name=jgi.p|Trimin1|131241|organism=Tribonema minus UTEX_B_3156 |type=mRNA|length=312bp|location=Sequence derived from alignment at Contig_141:263476..263787- (Tribonema minus UTEX_B_3156 )|Notes=Excludes all bases but those of type(s): exon.  
CTTTATGCAATGCAGCACTACTTCCACAAGATGGCCAACGGCACCTTCCT
GGAGCTGGGCGCGCTCGCTGGCGTGCGCCTCTCCAACACCGTCTCTCTAG
AAAGCGTAATGGGGTGGCGAGGCGTGCTGATAGAGGCGTCGCCGGCCAAC
TACGCGCGGCTCGTCGGCAATCGGCCCGACGCCATCTGCGTCCACGCCGC
GGTGTGCGGCGACGACGCGCAGGTGCACTACGTGGAGCTCGACCAGGAGG
CGGTGAAGGGGATCTACGAGTTCATGGCGCCGTCGTTCGTGCAGCACTGG
CATCCGAAACTG
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protein sequence of jgi.p|Trimin1|131241

>Trimin1|131241|gw1.141.9.1 ID=Trimin1|131241|gw1.141.9.1|Name=jgi.p|Trimin1|131241|organism=Tribonema minus UTEX_B_3156 |type=polypeptide|length=104bp
LYAMQHYFHKMANGTFLELGALAGVRLSNTVSLESVMGWRGVLIEASPAN
YARLVGNRPDAICVHAAVCGDDAQVHYVELDQEAVKGIYEFMAPSFVQHW
HPKL
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mRNA from alignment at Contig_141:263476..263787-

Legend: exonpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_13389 ID=mRNA_13389|Name=jgi.p|Trimin1|131241|organism=Tribonema minus UTEX_B_3156 |type=mRNA|length=312bp|location=Sequence derived from alignment at Contig_141:263476..263787- (Tribonema minus UTEX_B_3156 )
CTTTATGCAATGCAGCACTACTTCCACAAGATGGCCAACGGCACCTTCCT GGAGCTGGGCGCGCTCGCTGGCGTGCGCCTCTCCAACACCGTCTCTCTAG AAAGCGTAATGGGGTGGCGAGGCGTGCTGATAGAGGCGTCGCCGGCCAAC TACGCGCGGCTCGTCGGCAATCGGCCCGACGCCATCTGCGTCCACGCCGC GGTGTGCGGCGACGACGCGCAGGTGCACTACGTGGAGCTCGACCAGGAGG CGGTGAAGGGGATCTACGAGTTCATGGCGCCGTCGTTCGTGCAGCACTGG CATCCGAAACTG
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Coding sequence (CDS) from alignment at Contig_141:263476..263787-

>mRNA_13389 ID=mRNA_13389|Name=jgi.p|Trimin1|131241|organism=Tribonema minus UTEX_B_3156 |type=CDS|length=312bp|location=Sequence derived from alignment at Contig_141:263476..263787- (Tribonema minus UTEX_B_3156 )
CTTTATGCAATGCAGCACTACTTCCACAAGATGGCCAACGGCACCTTCCT
GGAGCTGGGCGCGCTCGCTGGCGTGCGCCTCTCCAACACCGTCTCTCTAG
AAAGCGTAATGGGGTGGCGAGGCGTGCTGATAGAGGCGTCGCCGGCCAAC
TACGCGCGGCTCGTCGGCAATCGGCCCGACGCCATCTGCGTCCACGCCGC
GGTGTGCGGCGACGACGCGCAGGTGCACTACGTGGAGCTCGACCAGGAGG
CGGTGAAGGGGATCTACGAGTTCATGGCGCCGTCGTTCGTGCAGCACTGG
CATCCGAAACTG
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