mRNA_13381 (mRNA) Tribonema minus UTEX_B_3156
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Overview
Homology
BLAST of jgi.p|Trimin1|155059 vs. uniprot
Match: A0A836CLB5_9STRA (DUF1279 domain-containing protein (Fragment) n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A836CLB5_9STRA) HSP 1 Score: 245 bits (625), Expect = 3.150e-82 Identity = 121/121 (100.00%), Postives = 121/121 (100.00%), Query Frame = 1
Query: 1 FKEMWRRYGLVAVGTYFGIYVATLGGLYLVFDYGFMTASDMPAGAAHAGDTLQALVERLPDWAQAKVNALYAKMQQEPGFRNFVLAWLTTKVTEPVRVLATVGITPRIARALGRAPKKLPK 363
FKEMWRRYGLVAVGTYFGIYVATLGGLYLVFDYGFMTASDMPAGAAHAGDTLQALVERLPDWAQAKVNALYAKMQQEPGFRNFVLAWLTTKVTEPVRVLATVGITPRIARALGRAPKKLPK
Sbjct: 1 FKEMWRRYGLVAVGTYFGIYVATLGGLYLVFDYGFMTASDMPAGAAHAGDTLQALVERLPDWAQAKVNALYAKMQQEPGFRNFVLAWLTTKVTEPVRVLATVGITPRIARALGRAPKKLPK 121
BLAST of jgi.p|Trimin1|155059 vs. uniprot
Match: D7FNZ5_ECTSI (DUF1279 domain-containing protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7FNZ5_ECTSI) HSP 1 Score: 115 bits (288), Expect = 6.880e-28 Identity = 53/118 (44.92%), Postives = 80/118 (67.80%), Query Frame = 1
Query: 4 KEMWRRYGLVAVGTYFGIYVATLGGLYLVFDYGFMTASDMPAGAAHAGDTLQALVERLPDWAQAKVNALYAKMQQEPGFRNFVLAWLTTKVTEPVRVLATVGITPRIARALGRAPKKL 357
+++WR+YG V +GTYFGIY ++ Y ++DYG +T+ +P+G + +Q ++ P+WAQ + L+ M ++ R+FVLAW T KV EPVR+L + ITPR+ARALGRAP K+
Sbjct: 331 QDLWRKYGAVGIGTYFGIYFGSIAVFYGIYDYGVLTS--LPSGGTAVIEHMQEWMKSAPEWAQGYSDRLFGAMVEDHRARSFVLAWATCKVLEPVRLLGAIAITPRMARALGRAPAKV 446
BLAST of jgi.p|Trimin1|155059 vs. uniprot
Match: A0A7S1XYK1_9STRA (Hypothetical protein n=3 Tax=Phaeomonas parva TaxID=124430 RepID=A0A7S1XYK1_9STRA) HSP 1 Score: 98.2 bits (243), Expect = 8.530e-23 Identity = 53/120 (44.17%), Postives = 70/120 (58.33%), Query Frame = 1
Query: 4 KEMWRRYGLVAVGTYFGIYVATLGGLYLVFDYGFMTASDMPAGAAHAGDTLQALVERLPDWAQAKVNAL-YAKMQQE-PGFRNFVLAWLTTKVTEPVRVLATVGITPRIARALGRAPKKL 357
+EMWRRYG VA+GTYF IY ATLGG + VF +G + + A + L V+ ++ + A Y M ++ P N LAW+ TK+TEP R L T+GITPR+AR GR P L
Sbjct: 97 REMWRRYGYVAIGTYFSIYAATLGGAFSVFHFGIVDPEVIVGDPRVAIEKLITFVQNQEEYVPQIILAEPYLHMLRDTPAATNIALAWIATKITEPARALITMGITPRLARLAGRVPATL 216
BLAST of jgi.p|Trimin1|155059 vs. uniprot
Match: A0A8K1C653_PYTOL (Uncharacterized protein n=1 Tax=Pythium oligandrum TaxID=41045 RepID=A0A8K1C653_PYTOL) HSP 1 Score: 95.5 bits (236), Expect = 6.840e-22 Identity = 52/126 (41.27%), Postives = 78/126 (61.90%), Query Frame = 1
Query: 4 KEMWRRYGLVAVGTYFGIYVATLGGLYLVFDYGFMTA-----SDMPAGAAHAGDTLQALVERLPDWAQAKVNALYAKMQQ-EPGFRNFVLAWLTTKVTEPVRVLATVGITPRIARALGRAPKKLPK 363
KE+WR+YG+VAVGTYF +Y LG +Y+ + G+++ S+ G A+A + ++ WA+ A + +Q+ +FV+AW+ TK TEP+R+ T+ ITPRIAR +GRAPK LPK
Sbjct: 97 KELWRQYGMVAVGTYFSMYFTVLGSIYVAIEQGWVSTKRTSRSEGENGEANADFNVVTATNKVVTWAEDMGIAKHLDLQRVNAKTGSFVIAWVATKFTEPLRLAVTLAITPRIARLVGRAPK-LPK 221
BLAST of jgi.p|Trimin1|155059 vs. uniprot
Match: D0MUM9_PHYIT (DUF1279 domain-containing protein n=1 Tax=Phytophthora infestans (strain T30-4) TaxID=403677 RepID=D0MUM9_PHYIT) HSP 1 Score: 93.2 bits (230), Expect = 2.300e-21 Identity = 51/123 (41.46%), Postives = 71/123 (57.72%), Query Frame = 1
Query: 4 KEMWRRYGLVAVGTYFGIYVATLGGLYLVFDYGFMTASDMPAGAAHA-GDTLQALVERLPDWAQAKVN-ALYAKMQQEPGFRN-FVLAWLTTKVTEPVRVLATVGITPRIARALGRAPKKLPK 363
K++WR+YG+VA+GTY +Y A LG +YL D G++ + + D LV W + A Y +++Q F+LAW+ TK TEPVR+ T+ +TPRIAR LGRAPK PK
Sbjct: 44 KDLWRKYGIVAIGTYLSMYGAVLGSMYLAIDQGWLRTNRRTSSKGEGQSDESFNLVATTNKWIAEDLGIAQYLEVEQVSSKTGTFLLAWIATKFTEPVRLALTIAVTPRIARFLGRAPKLPPK 166
BLAST of jgi.p|Trimin1|155059 vs. uniprot
Match: M4BYX8_HYAAE (DUF1279 domain-containing protein n=1 Tax=Hyaloperonospora arabidopsidis (strain Emoy2) TaxID=559515 RepID=M4BYX8_HYAAE) HSP 1 Score: 92.4 bits (228), Expect = 1.420e-20 Identity = 52/127 (40.94%), Postives = 75/127 (59.06%), Query Frame = 1
Query: 4 KEMWRRYGLVAVGTYFGIYVATLGGLYLVFDYGFM------TASDMPAGAAHAGDTLQALVERLPDWAQAKVNALYAKMQQ-EPGFRNFVLAWLTTKVTEPVRVLATVGITPRIARALGRAPKKLPK 363
K++WR+YG VA+GTYF +Y A LG +YL D G++ ++D P+ L + + WA+ A Y ++++ +F+LAW+ TK TEP+R+ TV TPRIAR LGRAPK PK
Sbjct: 94 KDLWRKYGAVAMGTYFSLYGAVLGSIYLAIDQGWVHTDTGRNSNDKPSDENF---DLVSTTNKFVKWAEDLGIAQYLEVERVNAKTGSFLLAWIATKFTEPLRLALTVAATPRIARFLGRAPKLPPK 217
BLAST of jgi.p|Trimin1|155059 vs. uniprot
Match: A0A833SXN0_PHYIN (DUF1279 domain-containing protein n=1 Tax=Phytophthora infestans TaxID=4787 RepID=A0A833SXN0_PHYIN) HSP 1 Score: 94.0 bits (232), Expect = 6.060e-20 Identity = 52/125 (41.60%), Postives = 72/125 (57.60%), Query Frame = 1
Query: 4 KEMWRRYGLVAVGTYFGIYVATLGGLYLVFDYGFMTA----SDMPAGAAHAGDTLQALVERLPDWAQAKVNALYAKMQQEPGFRN-FVLAWLTTKVTEPVRVLATVGITPRIARALGRAPKKLPK 363
K++WR+YG+VA+GTY +Y A LG +YL D G++ S G + L A + A+ A Y +++Q F+LAW+ TK TEPVR+ T+ +TPRIAR LGRAPK PK
Sbjct: 470 KDLWRKYGIVAIGTYLSMYGAVLGSMYLAIDQGWLRTNRRTSSKGEGQSDESFNLVATTNKFVKIAEDLGIAQYLEVEQVSSKTGTFLLAWIATKFTEPVRLALTIAVTPRIARFLGRAPKLPPK 594
BLAST of jgi.p|Trimin1|155059 vs. uniprot
Match: A0A6A3TMX1_9STRA (DUF1279 domain-containing protein n=3 Tax=Phytophthora TaxID=4783 RepID=A0A6A3TMX1_9STRA) HSP 1 Score: 89.7 bits (221), Expect = 8.650e-20 Identity = 50/125 (40.00%), Postives = 71/125 (56.80%), Query Frame = 1
Query: 4 KEMWRRYGLVAVGTYFGIYVATLGGLYLVFDYGFM----TASDMPAGAAHAGDTLQALVERLPDWAQAKVNALYAKMQQ-EPGFRNFVLAWLTTKVTEPVRVLATVGITPRIARALGRAPKKLPK 363
K++WR+YG+VA+GTY +Y LG +YL D G++ +S G A L + A+ A Y ++++ F+LAW+ TK TEPVR+ T+ +TPRIAR LGRAPK PK
Sbjct: 68 KDLWRKYGVVAIGTYMSMYGVVLGSMYLAIDQGWVHTAKRSSSKGEGQADESFNLVTTTNKFVKIAEDLGIAQYLEVERVNSKTGTFLLAWIATKFTEPVRLAVTLAVTPRIARFLGRAPKLPPK 192
BLAST of jgi.p|Trimin1|155059 vs. uniprot
Match: A0A3R7J9G6_9STRA (DUF1279 domain-containing protein n=3 Tax=Phytophthora kernoviae TaxID=325452 RepID=A0A3R7J9G6_9STRA) HSP 1 Score: 88.2 bits (217), Expect = 8.960e-20 Identity = 45/119 (37.82%), Postives = 72/119 (60.50%), Query Frame = 1
Query: 4 KEMWRRYGLVAVGTYFGIYVATLGGLYLVFDYGFMTASDMPAGAAHAGDTLQALV--ERLPDWAQAKVNALYAKMQQ-EPGFRNFVLAWLTTKVTEPVRVLATVGITPRIARALGRAPK 351
K++WR+YG+VA+GTY +Y A LG +Y+ D G++ S + ++ + + +A+ A Y ++++ +F+LAW+ TK TEPVR+ T+ +TPRIAR LGRAPK
Sbjct: 8 KDLWRKYGIVAIGTYLSLYGAVLGSIYVAIDQGWVRTSKRRSSREGQEESFNLITTTNKFVKFAEDMGIAQYLEVERVNSKTGSFLLAWVATKFTEPVRLAVTLAVTPRIARFLGRAPK 126
BLAST of jgi.p|Trimin1|155059 vs. uniprot
Match: H3GLJ1_PHYRM (DUF1279 domain-containing protein n=1 Tax=Phytophthora ramorum TaxID=164328 RepID=H3GLJ1_PHYRM) HSP 1 Score: 89.7 bits (221), Expect = 9.210e-20 Identity = 50/125 (40.00%), Postives = 75/125 (60.00%), Query Frame = 1
Query: 4 KEMWRRYGLVAVGTYFGIYVATLGGLYLVFDYGFMTASDMPA--GAAHAGDT--LQALVERLPDWAQAKVNALYAKMQQ-EPGFRNFVLAWLTTKVTEPVRVLATVGITPRIARALGRAPKKLPK 363
K++WR+YG+VA+GTY +Y A LG +YL D G++ + + G + +T L + +A+ A Y ++++ F+LAW+ TK TEPVR+ T+ +TPRIAR LGRAPK PK
Sbjct: 72 KDLWRKYGVVAIGTYLTMYGAVLGSVYLAIDQGWVRTNKRTSSKGEGQSDETFNLVTTTNKFVRFAEDLGIAQYLEVERVNSKTGTFLLAWIATKFTEPVRLALTIAVTPRIARFLGRAPKLPPK 196 The following BLAST results are available for this feature:
BLAST of jgi.p|Trimin1|155059 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90) Total hits: 25
Pagesback to topAlignments
The following features are aligned
Analyses
This mRNA is derived from or has results from the following analyses
Properties
Relationships
This mRNA is a part of the following gene feature(s):
The following exon feature(s) are a part of this mRNA:
The following CDS feature(s) are a part of this mRNA:
The following polypeptide feature(s) derives from this mRNA:
Sequences
The following sequences are available for this feature:
spliced messenger RNA >mRNA_13381 ID=mRNA_13381|Name=jgi.p|Trimin1|155059|organism=Tribonema minus UTEX_B_3156 |type=mRNA|length=363bp|location=Sequence derived from alignment at Contig_141:215856..216218+ (Tribonema minus UTEX_B_3156 )|Notes=Excludes all bases but those of type(s): exon. TTCAAGGAGATGTGGCGGCGCTACGGGCTGGTGGCGGTGGGCACCTACTTback to top protein sequence of jgi.p|Trimin1|155059 >Trimin1|155059|gw1.141.100.1 ID=Trimin1|155059|gw1.141.100.1|Name=jgi.p|Trimin1|155059|organism=Tribonema minus UTEX_B_3156 |type=polypeptide|length=121bp FKEMWRRYGLVAVGTYFGIYVATLGGLYLVFDYGFMTASDMPAGAAHAGDback to top mRNA from alignment at Contig_141:215856..216218+ Legend: exonpolypeptideCDS Hold the cursor over a type above to highlight its positions in the sequence below.>mRNA_13381 ID=mRNA_13381|Name=jgi.p|Trimin1|155059|organism=Tribonema minus UTEX_B_3156 |type=mRNA|length=363bp|location=Sequence derived from alignment at Contig_141:215856..216218+ (Tribonema minus UTEX_B_3156 )back to top Coding sequence (CDS) from alignment at Contig_141:215856..216218+ >mRNA_13381 ID=mRNA_13381|Name=jgi.p|Trimin1|155059|organism=Tribonema minus UTEX_B_3156 |type=CDS|length=363bp|location=Sequence derived from alignment at Contig_141:215856..216218+ (Tribonema minus UTEX_B_3156 )back to top |