mRNA_13381 (mRNA) Tribonema minus UTEX_B_3156

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
Namejgi.p|Trimin1|155059
Unique NamemRNA_13381
TypemRNA
OrganismTribonema minus UTEX_B_3156 (Tribonema minus UTEX_B_3156 )
Homology
BLAST of jgi.p|Trimin1|155059 vs. uniprot
Match: A0A836CLB5_9STRA (DUF1279 domain-containing protein (Fragment) n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A836CLB5_9STRA)

HSP 1 Score: 245 bits (625), Expect = 3.150e-82
Identity = 121/121 (100.00%), Postives = 121/121 (100.00%), Query Frame = 1
Query:    1 FKEMWRRYGLVAVGTYFGIYVATLGGLYLVFDYGFMTASDMPAGAAHAGDTLQALVERLPDWAQAKVNALYAKMQQEPGFRNFVLAWLTTKVTEPVRVLATVGITPRIARALGRAPKKLPK 363
            FKEMWRRYGLVAVGTYFGIYVATLGGLYLVFDYGFMTASDMPAGAAHAGDTLQALVERLPDWAQAKVNALYAKMQQEPGFRNFVLAWLTTKVTEPVRVLATVGITPRIARALGRAPKKLPK
Sbjct:    1 FKEMWRRYGLVAVGTYFGIYVATLGGLYLVFDYGFMTASDMPAGAAHAGDTLQALVERLPDWAQAKVNALYAKMQQEPGFRNFVLAWLTTKVTEPVRVLATVGITPRIARALGRAPKKLPK 121          
BLAST of jgi.p|Trimin1|155059 vs. uniprot
Match: D7FNZ5_ECTSI (DUF1279 domain-containing protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7FNZ5_ECTSI)

HSP 1 Score: 115 bits (288), Expect = 6.880e-28
Identity = 53/118 (44.92%), Postives = 80/118 (67.80%), Query Frame = 1
Query:    4 KEMWRRYGLVAVGTYFGIYVATLGGLYLVFDYGFMTASDMPAGAAHAGDTLQALVERLPDWAQAKVNALYAKMQQEPGFRNFVLAWLTTKVTEPVRVLATVGITPRIARALGRAPKKL 357
            +++WR+YG V +GTYFGIY  ++   Y ++DYG +T+  +P+G     + +Q  ++  P+WAQ   + L+  M ++   R+FVLAW T KV EPVR+L  + ITPR+ARALGRAP K+
Sbjct:  331 QDLWRKYGAVGIGTYFGIYFGSIAVFYGIYDYGVLTS--LPSGGTAVIEHMQEWMKSAPEWAQGYSDRLFGAMVEDHRARSFVLAWATCKVLEPVRLLGAIAITPRMARALGRAPAKV 446          
BLAST of jgi.p|Trimin1|155059 vs. uniprot
Match: A0A7S1XYK1_9STRA (Hypothetical protein n=3 Tax=Phaeomonas parva TaxID=124430 RepID=A0A7S1XYK1_9STRA)

HSP 1 Score: 98.2 bits (243), Expect = 8.530e-23
Identity = 53/120 (44.17%), Postives = 70/120 (58.33%), Query Frame = 1
Query:    4 KEMWRRYGLVAVGTYFGIYVATLGGLYLVFDYGFMTASDMPAGAAHAGDTLQALVERLPDWAQAKVNAL-YAKMQQE-PGFRNFVLAWLTTKVTEPVRVLATVGITPRIARALGRAPKKL 357
            +EMWRRYG VA+GTYF IY ATLGG + VF +G +    +      A + L   V+   ++    + A  Y  M ++ P   N  LAW+ TK+TEP R L T+GITPR+AR  GR P  L
Sbjct:   97 REMWRRYGYVAIGTYFSIYAATLGGAFSVFHFGIVDPEVIVGDPRVAIEKLITFVQNQEEYVPQIILAEPYLHMLRDTPAATNIALAWIATKITEPARALITMGITPRLARLAGRVPATL 216          
BLAST of jgi.p|Trimin1|155059 vs. uniprot
Match: A0A8K1C653_PYTOL (Uncharacterized protein n=1 Tax=Pythium oligandrum TaxID=41045 RepID=A0A8K1C653_PYTOL)

HSP 1 Score: 95.5 bits (236), Expect = 6.840e-22
Identity = 52/126 (41.27%), Postives = 78/126 (61.90%), Query Frame = 1
Query:    4 KEMWRRYGLVAVGTYFGIYVATLGGLYLVFDYGFMTA-----SDMPAGAAHAGDTLQALVERLPDWAQAKVNALYAKMQQ-EPGFRNFVLAWLTTKVTEPVRVLATVGITPRIARALGRAPKKLPK 363
            KE+WR+YG+VAVGTYF +Y   LG +Y+  + G+++      S+   G A+A   +     ++  WA+    A +  +Q+      +FV+AW+ TK TEP+R+  T+ ITPRIAR +GRAPK LPK
Sbjct:   97 KELWRQYGMVAVGTYFSMYFTVLGSIYVAIEQGWVSTKRTSRSEGENGEANADFNVVTATNKVVTWAEDMGIAKHLDLQRVNAKTGSFVIAWVATKFTEPLRLAVTLAITPRIARLVGRAPK-LPK 221          
BLAST of jgi.p|Trimin1|155059 vs. uniprot
Match: D0MUM9_PHYIT (DUF1279 domain-containing protein n=1 Tax=Phytophthora infestans (strain T30-4) TaxID=403677 RepID=D0MUM9_PHYIT)

HSP 1 Score: 93.2 bits (230), Expect = 2.300e-21
Identity = 51/123 (41.46%), Postives = 71/123 (57.72%), Query Frame = 1
Query:    4 KEMWRRYGLVAVGTYFGIYVATLGGLYLVFDYGFMTASDMPAGAAHA-GDTLQALVERLPDWAQAKVN-ALYAKMQQEPGFRN-FVLAWLTTKVTEPVRVLATVGITPRIARALGRAPKKLPK 363
            K++WR+YG+VA+GTY  +Y A LG +YL  D G++  +   +       D    LV     W    +  A Y +++Q       F+LAW+ TK TEPVR+  T+ +TPRIAR LGRAPK  PK
Sbjct:   44 KDLWRKYGIVAIGTYLSMYGAVLGSMYLAIDQGWLRTNRRTSSKGEGQSDESFNLVATTNKWIAEDLGIAQYLEVEQVSSKTGTFLLAWIATKFTEPVRLALTIAVTPRIARFLGRAPKLPPK 166          
BLAST of jgi.p|Trimin1|155059 vs. uniprot
Match: M4BYX8_HYAAE (DUF1279 domain-containing protein n=1 Tax=Hyaloperonospora arabidopsidis (strain Emoy2) TaxID=559515 RepID=M4BYX8_HYAAE)

HSP 1 Score: 92.4 bits (228), Expect = 1.420e-20
Identity = 52/127 (40.94%), Postives = 75/127 (59.06%), Query Frame = 1
Query:    4 KEMWRRYGLVAVGTYFGIYVATLGGLYLVFDYGFM------TASDMPAGAAHAGDTLQALVERLPDWAQAKVNALYAKMQQ-EPGFRNFVLAWLTTKVTEPVRVLATVGITPRIARALGRAPKKLPK 363
            K++WR+YG VA+GTYF +Y A LG +YL  D G++       ++D P+        L +   +   WA+    A Y ++++      +F+LAW+ TK TEP+R+  TV  TPRIAR LGRAPK  PK
Sbjct:   94 KDLWRKYGAVAMGTYFSLYGAVLGSIYLAIDQGWVHTDTGRNSNDKPSDENF---DLVSTTNKFVKWAEDLGIAQYLEVERVNAKTGSFLLAWIATKFTEPLRLALTVAATPRIARFLGRAPKLPPK 217          
BLAST of jgi.p|Trimin1|155059 vs. uniprot
Match: A0A833SXN0_PHYIN (DUF1279 domain-containing protein n=1 Tax=Phytophthora infestans TaxID=4787 RepID=A0A833SXN0_PHYIN)

HSP 1 Score: 94.0 bits (232), Expect = 6.060e-20
Identity = 52/125 (41.60%), Postives = 72/125 (57.60%), Query Frame = 1
Query:    4 KEMWRRYGLVAVGTYFGIYVATLGGLYLVFDYGFMTA----SDMPAGAAHAGDTLQALVERLPDWAQAKVNALYAKMQQEPGFRN-FVLAWLTTKVTEPVRVLATVGITPRIARALGRAPKKLPK 363
            K++WR+YG+VA+GTY  +Y A LG +YL  D G++      S    G +     L A   +    A+    A Y +++Q       F+LAW+ TK TEPVR+  T+ +TPRIAR LGRAPK  PK
Sbjct:  470 KDLWRKYGIVAIGTYLSMYGAVLGSMYLAIDQGWLRTNRRTSSKGEGQSDESFNLVATTNKFVKIAEDLGIAQYLEVEQVSSKTGTFLLAWIATKFTEPVRLALTIAVTPRIARFLGRAPKLPPK 594          
BLAST of jgi.p|Trimin1|155059 vs. uniprot
Match: A0A6A3TMX1_9STRA (DUF1279 domain-containing protein n=3 Tax=Phytophthora TaxID=4783 RepID=A0A6A3TMX1_9STRA)

HSP 1 Score: 89.7 bits (221), Expect = 8.650e-20
Identity = 50/125 (40.00%), Postives = 71/125 (56.80%), Query Frame = 1
Query:    4 KEMWRRYGLVAVGTYFGIYVATLGGLYLVFDYGFM----TASDMPAGAAHAGDTLQALVERLPDWAQAKVNALYAKMQQ-EPGFRNFVLAWLTTKVTEPVRVLATVGITPRIARALGRAPKKLPK 363
            K++WR+YG+VA+GTY  +Y   LG +YL  D G++     +S    G A     L     +    A+    A Y ++++       F+LAW+ TK TEPVR+  T+ +TPRIAR LGRAPK  PK
Sbjct:   68 KDLWRKYGVVAIGTYMSMYGVVLGSMYLAIDQGWVHTAKRSSSKGEGQADESFNLVTTTNKFVKIAEDLGIAQYLEVERVNSKTGTFLLAWIATKFTEPVRLAVTLAVTPRIARFLGRAPKLPPK 192          
BLAST of jgi.p|Trimin1|155059 vs. uniprot
Match: A0A3R7J9G6_9STRA (DUF1279 domain-containing protein n=3 Tax=Phytophthora kernoviae TaxID=325452 RepID=A0A3R7J9G6_9STRA)

HSP 1 Score: 88.2 bits (217), Expect = 8.960e-20
Identity = 45/119 (37.82%), Postives = 72/119 (60.50%), Query Frame = 1
Query:    4 KEMWRRYGLVAVGTYFGIYVATLGGLYLVFDYGFMTASDMPAGAAHAGDTLQALV--ERLPDWAQAKVNALYAKMQQ-EPGFRNFVLAWLTTKVTEPVRVLATVGITPRIARALGRAPK 351
            K++WR+YG+VA+GTY  +Y A LG +Y+  D G++  S   +      ++   +    +   +A+    A Y ++++      +F+LAW+ TK TEPVR+  T+ +TPRIAR LGRAPK
Sbjct:    8 KDLWRKYGIVAIGTYLSLYGAVLGSIYVAIDQGWVRTSKRRSSREGQEESFNLITTTNKFVKFAEDMGIAQYLEVERVNSKTGSFLLAWVATKFTEPVRLAVTLAVTPRIARFLGRAPK 126          
BLAST of jgi.p|Trimin1|155059 vs. uniprot
Match: H3GLJ1_PHYRM (DUF1279 domain-containing protein n=1 Tax=Phytophthora ramorum TaxID=164328 RepID=H3GLJ1_PHYRM)

HSP 1 Score: 89.7 bits (221), Expect = 9.210e-20
Identity = 50/125 (40.00%), Postives = 75/125 (60.00%), Query Frame = 1
Query:    4 KEMWRRYGLVAVGTYFGIYVATLGGLYLVFDYGFMTASDMPA--GAAHAGDT--LQALVERLPDWAQAKVNALYAKMQQ-EPGFRNFVLAWLTTKVTEPVRVLATVGITPRIARALGRAPKKLPK 363
            K++WR+YG+VA+GTY  +Y A LG +YL  D G++  +   +  G   + +T  L     +   +A+    A Y ++++       F+LAW+ TK TEPVR+  T+ +TPRIAR LGRAPK  PK
Sbjct:   72 KDLWRKYGVVAIGTYLTMYGAVLGSVYLAIDQGWVRTNKRTSSKGEGQSDETFNLVTTTNKFVRFAEDLGIAQYLEVERVNSKTGTFLLAWIATKFTEPVRLALTIAVTPRIARFLGRAPKLPPK 196          
The following BLAST results are available for this feature:
BLAST of jgi.p|Trimin1|155059 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
A0A836CLB5_9STRA3.150e-82100.00DUF1279 domain-containing protein (Fragment) n=1 T... [more]
D7FNZ5_ECTSI6.880e-2844.92DUF1279 domain-containing protein n=1 Tax=Ectocarp... [more]
A0A7S1XYK1_9STRA8.530e-2344.17Hypothetical protein n=3 Tax=Phaeomonas parva TaxI... [more]
A0A8K1C653_PYTOL6.840e-2241.27Uncharacterized protein n=1 Tax=Pythium oligandrum... [more]
D0MUM9_PHYIT2.300e-2141.46DUF1279 domain-containing protein n=1 Tax=Phytopht... [more]
M4BYX8_HYAAE1.420e-2040.94DUF1279 domain-containing protein n=1 Tax=Hyaloper... [more]
A0A833SXN0_PHYIN6.060e-2041.60DUF1279 domain-containing protein n=1 Tax=Phytopht... [more]
A0A6A3TMX1_9STRA8.650e-2040.00DUF1279 domain-containing protein n=3 Tax=Phytopht... [more]
A0A3R7J9G6_9STRA8.960e-2037.82DUF1279 domain-containing protein n=3 Tax=Phytopht... [more]
H3GLJ1_PHYRM9.210e-2040.00DUF1279 domain-containing protein n=1 Tax=Phytopht... [more]

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
Contig_141contigContig_141:215856..216218 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Tribonema minus UTEX_B_31562021-06-17
Properties
Property NameValue
ProteomeIdTrimin1|155059|gw1.141.100.1
DescriptionN-terminal peptidyl-methionine acetylation
COG categoryS
Max annot lvl2759|Eukaryota
EggNOG OGsKOG4526@1|root,KOG4526@2759|Eukaryota
Evalue1.46e-22
Seed ortholog42099.EPrPV00000018888
Hectar predicted targeting categorysignal anchor
Ec32 ortholog descriptionDomain of unknown function DUF1279
Ec32 orthologEc-10_004940.1
TranscriptId155381
TrackFilteredModels1
ProteinId155059
Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesTypePosition
jgi.p|Trimin1|155059gene_13381Tribonema minus UTEX_B_3156 geneContig_141 215856..216218 +


The following exon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
exon_13381_1exon_13381_1Tribonema minus UTEX_B_3156 exonContig_141 215856..216218 +


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
CDS_13381CDS_13381Tribonema minus UTEX_B_3156 CDSContig_141 215856..216218 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
jgi.p|Trimin1|155059Trimin1|155059|gw1.141.100.1Tribonema minus UTEX_B_3156 polypeptideContig_141 215856..216218 +


Sequences
The following sequences are available for this feature:

spliced messenger RNA

>mRNA_13381 ID=mRNA_13381|Name=jgi.p|Trimin1|155059|organism=Tribonema minus UTEX_B_3156 |type=mRNA|length=363bp|location=Sequence derived from alignment at Contig_141:215856..216218+ (Tribonema minus UTEX_B_3156 )|Notes=Excludes all bases but those of type(s): exon.  
TTCAAGGAGATGTGGCGGCGCTACGGGCTGGTGGCGGTGGGCACCTACTT
CGGCATCTACGTTGCCACCCTGGGGGGCCTCTACCTCGTCTTCGACTATG
GCTTCATGACGGCCTCGGACATGCCGGCGGGCGCGGCGCACGCGGGCGAC
ACGCTGCAGGCGCTCGTGGAGCGCCTCCCGGACTGGGCGCAGGCCAAGGT
CAACGCGCTGTACGCCAAGATGCAGCAGGAGCCGGGGTTCCGGAACTTTG
TGCTGGCGTGGCTCACGACCAAGGTGACGGAGCCGGTGCGCGTGCTGGCG
ACGGTGGGCATCACGCCGCGAATAGCGCGCGCCCTGGGGAGGGCTCCCAA
GAAGCTGCCGAAG
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protein sequence of jgi.p|Trimin1|155059

>Trimin1|155059|gw1.141.100.1 ID=Trimin1|155059|gw1.141.100.1|Name=jgi.p|Trimin1|155059|organism=Tribonema minus UTEX_B_3156 |type=polypeptide|length=121bp
FKEMWRRYGLVAVGTYFGIYVATLGGLYLVFDYGFMTASDMPAGAAHAGD
TLQALVERLPDWAQAKVNALYAKMQQEPGFRNFVLAWLTTKVTEPVRVLA
TVGITPRIARALGRAPKKLPK
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mRNA from alignment at Contig_141:215856..216218+

Legend: exonpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_13381 ID=mRNA_13381|Name=jgi.p|Trimin1|155059|organism=Tribonema minus UTEX_B_3156 |type=mRNA|length=363bp|location=Sequence derived from alignment at Contig_141:215856..216218+ (Tribonema minus UTEX_B_3156 )
TTCAAGGAGATGTGGCGGCGCTACGGGCTGGTGGCGGTGGGCACCTACTT CGGCATCTACGTTGCCACCCTGGGGGGCCTCTACCTCGTCTTCGACTATG GCTTCATGACGGCCTCGGACATGCCGGCGGGCGCGGCGCACGCGGGCGAC ACGCTGCAGGCGCTCGTGGAGCGCCTCCCGGACTGGGCGCAGGCCAAGGT CAACGCGCTGTACGCCAAGATGCAGCAGGAGCCGGGGTTCCGGAACTTTG TGCTGGCGTGGCTCACGACCAAGGTGACGGAGCCGGTGCGCGTGCTGGCG ACGGTGGGCATCACGCCGCGAATAGCGCGCGCCCTGGGGAGGGCTCCCAA GAAGCTGCCGAAG
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Coding sequence (CDS) from alignment at Contig_141:215856..216218+

>mRNA_13381 ID=mRNA_13381|Name=jgi.p|Trimin1|155059|organism=Tribonema minus UTEX_B_3156 |type=CDS|length=363bp|location=Sequence derived from alignment at Contig_141:215856..216218+ (Tribonema minus UTEX_B_3156 )
TTCAAGGAGATGTGGCGGCGCTACGGGCTGGTGGCGGTGGGCACCTACTT
CGGCATCTACGTTGCCACCCTGGGGGGCCTCTACCTCGTCTTCGACTATG
GCTTCATGACGGCCTCGGACATGCCGGCGGGCGCGGCGCACGCGGGCGAC
ACGCTGCAGGCGCTCGTGGAGCGCCTCCCGGACTGGGCGCAGGCCAAGGT
CAACGCGCTGTACGCCAAGATGCAGCAGGAGCCGGGGTTCCGGAACTTTG
TGCTGGCGTGGCTCACGACCAAGGTGACGGAGCCGGTGCGCGTGCTGGCG
ACGGTGGGCATCACGCCGCGAATAGCGCGCGCCCTGGGGAGGGCTCCCAA
GAAGCTGCCGAAG
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