mRNA_13375 (mRNA) Tribonema minus UTEX_B_3156
Overview
Homology
BLAST of jgi.p|Trimin1|353030 vs. uniprot
Match: A0A835Z880_9STRA (Uncharacterized protein n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A835Z880_9STRA) HSP 1 Score: 613 bits (1580), Expect = 6.120e-219 Identity = 324/324 (100.00%), Postives = 324/324 (100.00%), Query Frame = 1 Query: 1 MAKGKILENLREEEESNSTATPAEQDDRGSFDKSKLAAEVSTPFRTLRLFIYGAFATSALIGGLTACTQLAASVANQLDALPLSQCLLNVGVDFGVVAVCVYAYNFENKQRQGLVEQKRAEREQAALRKQSVIPEEVTKSRVERLRELQIRLTVSESETKNVPLGVLMQEAQHGLVLWHLEAKQDVVLVAGGKEMLRDAMLRATVNREIFTANNLLIVPVQVADPSDPTAAVTDKGFGAKPAYFKQGFVGEPAEEDEWRALVAEEIRDADRQGNSKAAKQGVVLVVSRDGKVLRRGLGMPKWDMIRQDLYPNAKVDDMGRRLVE 972 MAKGKILENLREEEESNSTATPAEQDDRGSFDKSKLAAEVSTPFRTLRLFIYGAFATSALIGGLTACTQLAASVANQLDALPLSQCLLNVGVDFGVVAVCVYAYNFENKQRQGLVEQKRAEREQAALRKQSVIPEEVTKSRVERLRELQIRLTVSESETKNVPLGVLMQEAQHGLVLWHLEAKQDVVLVAGGKEMLRDAMLRATVNREIFTANNLLIVPVQVADPSDPTAAVTDKGFGAKPAYFKQGFVGEPAEEDEWRALVAEEIRDADRQGNSKAAKQGVVLVVSRDGKVLRRGLGMPKWDMIRQDLYPNAKVDDMGRRLVE Sbjct: 1 MAKGKILENLREEEESNSTATPAEQDDRGSFDKSKLAAEVSTPFRTLRLFIYGAFATSALIGGLTACTQLAASVANQLDALPLSQCLLNVGVDFGVVAVCVYAYNFENKQRQGLVEQKRAEREQAALRKQSVIPEEVTKSRVERLRELQIRLTVSESETKNVPLGVLMQEAQHGLVLWHLEAKQDVVLVAGGKEMLRDAMLRATVNREIFTANNLLIVPVQVADPSDPTAAVTDKGFGAKPAYFKQGFVGEPAEEDEWRALVAEEIRDADRQGNSKAAKQGVVLVVSRDGKVLRRGLGMPKWDMIRQDLYPNAKVDDMGRRLVE 324
BLAST of jgi.p|Trimin1|353030 vs. uniprot
Match: A0A6H5JEG6_9PHAE (Uncharacterized protein n=2 Tax=Ectocarpus TaxID=2879 RepID=A0A6H5JEG6_9PHAE) HSP 1 Score: 217 bits (552), Expect = 1.930e-62 Identity = 135/308 (43.83%), Postives = 192/308 (62.34%), Query Frame = 1 Query: 37 EEESNSTATPAEQDDRGSFDKSKLAAEVSTPFRTLRLFIYGAFATSALIGGLTACTQLAASVANQLDALPLSQCLLNVGVDFGVVAVCVYAYNFENKQRQGLVEQKRAEREQAALRKQSVIPEEVTKSRVERLRELQIRLTVSESET-----KNVPLGVLMQEAQHGLVLWHLEAKQDVVLVAGGKEMLRDAMLRATVNR-EIFTANNLLIVPVQVADPSDPTAAV-TDKGFGAKPAYFKQGFVGEPAEEDEWRALVAEEIRDADRQG--NSKAAKQGVVLVVSRDGKVLRRGLGMPKWDMIRQDLYP 933 +E+ + ATPA F+ KL AE TPFRT R+FIYGAF SALIGG+T+ TQLAA++++Q AL L + L+N+ VDFGV+A + YNFE Q++ L + + A RE+ K + I +V RV++LR L +++ S + K P+GVLM EA KQ ++AGGKE +RD++L A + + +IF + NLL+VPV++ SD A KGFG +Y +QG+V P +ED WRAL+ EE A+RQG + K G+VL+VS+ GKVLRRG+G+P W++IR D+ P Sbjct: 110 DEQDDEVATPA-------FNIDKLKAETKTPFRTFRIFIYGAFGVSALIGGITSLTQLAATLSDQPGALELQKVLINLLVDFGVMAAAAFCYNFETSQQEDLEQVEAANREKRQKLKATKITSDVNADRVKQLRALSVKVPGSGNGAELEGAKEAPVGVLMDEA-----------KQAFCVLAGGKEFVRDSILAAMLAKNQIFPSLNLLVVPVEMEVASDGKGAKGLAKGFGTSLSYEEQGYVAAPVDEDGWRALMREEFEAAERQGVVAQSSGKDGIVLLVSKKGKVLRRGVGIPMWNIIRDDVDP 399
BLAST of jgi.p|Trimin1|353030 vs. uniprot
Match: A0A4D9D4V0_9STRA (Uncharacterized protein n=1 Tax=Nannochloropsis salina CCMP1776 TaxID=1027361 RepID=A0A4D9D4V0_9STRA) HSP 1 Score: 159 bits (401), Expect = 2.700e-41 Identity = 103/296 (34.80%), Postives = 155/296 (52.36%), Query Frame = 1 Query: 103 KLAAEVSTPFRTLRLFIYGAFATSALIGGLTACTQLAASVANQLDALPLSQCLLNVGVDFGVVAVCVYAYNFENKQRQGLVEQKRAEREQAALRKQSVIPEEVTKSRVERLRELQIRLTVSESETKNVPLGVLMQEAQHGLVLWHLEAKQDVVLVAGGKEMLRDAMLRATVNREIFTANNLLIVPVQVADPSDPTA----------AVTDKGFGAKPAYF-KQGFVGEPAEEDEWRALVAEEIRDADRQGNSKAAKQGVVLVVSRDGKVLRRGLGMPKWDMIRQDLYPNAKVDDMG 957 KL +E + PFR+LRLFIYG A +GG TA TQL S+ ++ DALPLSQ +LNVGVDFGV A A+ FEN+ +Q ++ +A R + R + ++ K+R L L + V +ETK+ + L ++ Q ++++A K L DA+ A V + +F NN++I P + +D ++DK G K A + +V +PAE W + EE+ DA RQGN A K G+ +V+ +DG ++RRGLG P W + +L + G Sbjct: 20 KLRSEATAPFRSLRLFIYGGIGVGASLGGYTAVTQLVQSLQHRPDALPLSQSILNVGVDFGVAAAAAGAWVFENRLKQVTDKEMQALRAKEPFR----LTFDMKKARERALSGLPVTFKVGLNETKSASVKDLREKGG-----------QHLIVLAAPKGELADALFGARVGKTLFAKNNVMIAPFVIQGGNDKAGEEASSVKGFGGMSDKATGMKEAMIDSEAYVAKPAESASWATYIDEELEDAVRQGNEIARKTGIGIVMRKDGSIIRRGLGQPDWKEVVAELTGAKGTSEFG 300
BLAST of jgi.p|Trimin1|353030 vs. uniprot
Match: W7TV54_9STRA (Uncharacterized protein n=2 Tax=Nannochloropsis gaditana TaxID=72520 RepID=W7TV54_9STRA) HSP 1 Score: 160 bits (405), Expect = 2.490e-40 Identity = 102/296 (34.46%), Postives = 157/296 (53.04%), Query Frame = 1 Query: 103 KLAAEVSTPFRTLRLFIYGAFATSALIGGLTACTQLAASVANQLDALPLSQCLLNVGVDFGVVAVCVYAYNFENKQRQGLVEQKRAEREQAALRKQSVIPEEVTKSRVERLRELQIRLTVSESETKNVPLGVLMQEAQHGLVLWHLEAKQDVVLVAGGKEMLRDAMLRATVNREIFTANNLLIVPVQVADPSDPTA----------AVTDKGFGAKPAYF-KQGFVGEPAEEDEWRALVAEEIRDADRQGNSKAAKQGVVLVVSRDGKVLRRGLGMPKWDMIRQDLYPNAKVDDMG 957 KL +E +TPFR+LRLFIYG A +GG TA TQL S+ ++ DALPLSQ +LNVGVDFGV A A+ FEN+ +Q ++ +A R + R + ++ K+R L L + V +ET++ + L ++ Q ++++A K L DA+ A V + +F NN++I P + +D T ++DK G K A + +V +PA+ W + EE+ DA RQGN KA G+ +V+ +DG ++RRG+G P W + +L + G Sbjct: 192 KLRSEATTPFRSLRLFIYGGIGVGASLGGYTAVTQLVQSLQHRPDALPLSQSILNVGVDFGVAAAAAGAWVFENRLKQVTDKEMQALRAKEPFR----LTFDMKKARERALSGLPVTFKVGLNETRSASVKDLREKGG-----------QHLIVLAAPKGELADALFGARVGKTLFAKNNVMIAPFVIQGGNDKTGEEAIGVKGFGGMSDKATGMKEAMIDSEAYVAKPADSASWATYIDEELEDAVRQGNEKARNTGIGIVMRKDGSIIRRGVGQPDWKEVVAELTGAKGTSEFG 472
BLAST of jgi.p|Trimin1|353030 vs. uniprot
Match: A0A7S4A636_9STRA (Hypothetical protein n=2 Tax=Pelagomonas calceolata TaxID=35677 RepID=A0A7S4A636_9STRA) HSP 1 Score: 150 bits (379), Expect = 5.240e-38 Identity = 106/282 (37.59%), Postives = 146/282 (51.77%), Query Frame = 1 Query: 97 KSKLAAEVSTPFRTLRLFIYGAFATSALIGGLTACTQLAASVANQLDALPLSQCLLNVGVDFGVVAVCVYAYNFENKQRQGLVEQKRAEREQAALRKQSVIPEEVTKSRVERLRELQIRLTVSESETKNVPLGVLMQEAQHGLVLWHLEAKQDVVLVAGGKEMLRDAMLRATVNREIFTANNLLIVPVQVADPSDPTAAVTDKGFGAKPAYFKQGFVGEPAEEDEWRALVAEEIRDADRQGNSKAAKQGVVLVVSRDGKVLRRGLGMPKWDMIRQDLYPNAK 942 K+KL E +P+RT+R FIYGAFA SA +GGLTA TQLAA+V+ Q DALPL Q + NV VDFGVVA C Y + GL E A + I +E + + L++L++ TV+ NV A Q VV+VAG ++ DA+ A + ++ A +L+VPV+ + AA+ G + + GFV P + +W+A A E A QG AA+ G+V+ V DG V RRGLG P W M+ +L P K Sbjct: 77 KAKLLQEAESPWRTVRKFIYGAFALSATVGGLTALTQLAAAVSKQPDALPLEQTIQNVVVDFGVVAACAYGAKVDGAADSGLEEDDGAP--------STTIDDEAIAANLATLQKLEV--TVAGERVANVET-------------LRTAANQAVVVVAGPSSVVDDALRDALIEQKTLAAAEVLVVPVRTSAEDAVEAAM-----GRRSDSY--GFVAPPVDAAKWKAYAAAECAVAAGQGAETAAEDGIVIAVRADGTVARRGLGKPVWKMVAAELSPPKK 328
BLAST of jgi.p|Trimin1|353030 vs. uniprot
Match: A0A7S2M8S3_9STRA (Hypothetical protein n=1 Tax=Skeletonema marinoi TaxID=267567 RepID=A0A7S2M8S3_9STRA) HSP 1 Score: 136 bits (343), Expect = 9.310e-33 Identity = 94/279 (33.69%), Postives = 145/279 (51.97%), Query Frame = 1 Query: 103 KLAAEVSTPFRTLRLFIYGAFATSALIGGLTACTQLAASVANQLDALPLSQCLLNVGVDFGVVAVCVYAYNFENKQRQGL---VEQKRAEREQAALRKQSVIPEEVTKSRVERLRELQIRLTVSES-ETKNVPLGVLMQEAQHGLVLWHLEAKQDVVLVAGGKEMLRDAMLRATVNREIFTANNLLIVPVQVADPSDPTAAVTDKGFGAKPAYFKQGFVGEPAEEDEWRALVAEEIRDADRQGNSKAAKQGVVLVVSRDGKVLRRGLGMPKWDMIRQDL 927 KL AE PFR LRLF Y AFA+ A +GGL + +AA+++ + L+ LN+G+DFG VA+ F+ + + L VE K ER++A + S + K R ++L +L I + V+E +TK +G + A KQ +++VAG +RDA+ A +N+ F N+L+VP + A+ GFG +P Y Q +V E E W + + E+ A Q K ++G+ LV++ DGKVLRRG+G W + +L Sbjct: 64 KLLAETIAPFRGLRLFFYAAFASGAFVGGLITASGVAAALSGVRTDVDLNTEYLNLGIDFGAVALFAVLAKFDLNKGEELNAAVEAK-VERKKAMKKITSAM-----KEREQQLADLNINVRVTEEGDTKTATMGTMQSMA-----------KQHIIMVAGPGRAIRDALRGAQLNKVNFAMTNILVVPYETGLDEAARASKPSGGFGDRPTYETQAYVAEAVGEG-WESFIEAEMETAAEQAGEKVREEGIALVIANDGKVLRRGVGRVPWRQMVDEL 324
BLAST of jgi.p|Trimin1|353030 vs. uniprot
Match: A0A7S1TN68_9STRA (Hypothetical protein n=1 Tax=Phaeomonas parva TaxID=124430 RepID=A0A7S1TN68_9STRA) HSP 1 Score: 129 bits (324), Expect = 1.270e-29 Identity = 95/290 (32.76%), Postives = 153/290 (52.76%), Query Frame = 1 Query: 115 EVSTPFRTLRLFIYGAFATSALIGGLTACTQLAASVANQLDALPLSQCLLNVGVDFGVVAVCVYAYNFENKQRQGLVEQKRAEREQAALRKQSVIPEEVTKSRVERLRELQIRLTVSESETKNVPLGVLMQEAQHGLVLWHLEAKQD----------VVLVAGGKEMLRDAMLRATV-NREIFTANNLLIVPVQV-----ADPSDPTAAVTDKGFGA-KPAYFKQGFVGEPAE--EDEWRALVAEEIRDADRQGNSKAAKQGVVLVVSRDGKVLRRGLGMPKWDMIRQDL 927 E+++PFR LR F+YGA +G LTA +QLAA V+ A +++ N +DF VVA + + F++KQR EQK E R + + ++ +++ LREL + L++++++ VP G E GL +AK D VV + E +++A+++A + + F N+LIVPV++ A A+ KGFGA P + +QG+V PA E W V +EI DA+ QG AK+G+ + + ++ V RRGLG+P W+ + +L Sbjct: 125 EITSPFRGLRFFVYGAGFLGGGVGFLTALSQLAAGVSGVEGAPEVAKSATNAAIDFAVVAAAIAGWRFDSKQR----EQKIGALEDVETRNRGKVTDDAATAKLAALRELNVMLSIADAD---VPEGFSAPEGAVGL-----KAKVDDLLGKASSSVVVFASTSGERVKEALVKAQILGEQEFLNKNVLIVPVELEKLRRAARGAAGASTEKKGFGATSPVWMEQGYVAPPAPGTEKAWLEYVEQEIADAEAQGAVNPAKEGIAICLRKNKTVSRRGLGVPLWEDVINEL 402
BLAST of jgi.p|Trimin1|353030 vs. uniprot
Match: A0A7S2N0T1_9STRA (Hypothetical protein n=2 Tax=Helicotheca tamesis TaxID=374047 RepID=A0A7S2N0T1_9STRA) HSP 1 Score: 127 bits (320), Expect = 1.920e-29 Identity = 86/279 (30.82%), Postives = 148/279 (53.05%), Query Frame = 1 Query: 97 KSKLAAEVSTPFRTLRLFIYGAFATSALIGGLTACTQLAASVANQLDALPLSQCLLNVGVDFGVVAVCVYAYNFENKQRQGLVE--QKRAEREQAALRKQSVIPEEVTKSRVERLRELQIRLTVSESETKNVPLGVLMQEAQHGLVLWHLEAKQDVVLVAGGKEMLRDAMLRATVNREIFTANNLLIVPVQVADPSDPTAAVTDKGFGAKPAYFKQGFVGEPAEEDEWRALVAEEIRDADRQGNSKAAKQGVVLVVSRDGKVLRRGLGMPKWDMIRQDL 927 +SKL E P+RTLRLF+Y + + AL+GG + +AA ++ D + L+ LN+ +DFG + ++ + L E +K+ ER++ + + + E R +RL +L + + VS+ +Q AKQ +V+VAG ++ +RDA+L A + F NLL+VP ++++ ++ + GFG +PAY Q +V E D W + EE+ DA +QG K ++G+ +V++ DGKV+RRG+G W + ++L Sbjct: 81 RSKLLTESIAPWRTLRLFLYASLGSGALLGGFITLSGVAAFLSGVRDDVDLNTEYLNLAIDFGAAIAFAFLAKWDFDKGAELSENVEKKLERKKEQRKITNAMRE-----REDRLSKLSLNVRVSDGGDMQTATVSALQSG----------AKQHMVIVAGNRKAIRDALLGANFLKMEFAVRNLLVVPYEISEETEKQVRPSG-GFGERPAYETQPYVAEVVG-DGWEEYIEEEMIDAVKQGGEKVKEEGIAIVLANDGKVIRRGVGTVPWRKMVEEL 342
BLAST of jgi.p|Trimin1|353030 vs. uniprot
Match: F0Y9V5_AURAN (C2 domain-containing protein n=1 Tax=Aureococcus anophagefferens TaxID=44056 RepID=F0Y9V5_AURAN) HSP 1 Score: 130 bits (326), Expect = 1.030e-28 Identity = 100/299 (33.44%), Postives = 151/299 (50.50%), Query Frame = 1 Query: 97 KSKLAAEVSTPFRTLRLFIYGAFATSALIGGLTACTQLAASVANQLDALPLSQCLLNVGVDFGVVAVCVYAYNFENKQRQGLVEQKRAEREQAALRKQSVIPEEVTKSRVERLRELQIRLTVSESETKNVPLGVLMQEAQHGLVLWHLEAKQDVVLVAGGKEMLRDAMLRATVNREIFTANNLLIVPVQVADPSDPTAAVTDKGFGAKPA-----YFKQGFVGEPAEEDE--WRALVAEEIRDADRQGNSKAAKQGVVLVVSRDGKVLRRGLGMPKWDMIRQDLYPNAKVDDMGRRLVE 972 KSKL E TP+RT+R F YGAF SA +GG+TA Q AASVA Q DALPLSQC +NV VD GVVA C+Y + +N + + + + + ++V ++R + + +L++ +V LG L + A + +A Q VV++ G + + DA+L A + R F ++VPV++ D G GA PA + FV P +D WR+ + +E+ A QG +A GVV+ + RDG V R +G P W + + A+V G ++ Sbjct: 51 KSKLLQEAQTPWRTVRTFFYGAFGLSATVGGITALAQTAASVAGQPDALPLSQCGVNVLVDAGVVAACLYGNSVDNGEAADIT----------VADETAPLADDVAEARRDAVAKLRV----------DVGLGDLKRSA--AVRTLQRDAGQAVVVLGGPRAAVDDALLDALIQRNAFARAECVVVPVRL-----------DDGAGAAPATNALTVDEAPFVALPNADDAAAWRSYLEDELATAADQGADTSA--GVVVALRRDGTVASRNVGKPPWPQLIAAIDAKAEVAANGHATMD 314
BLAST of jgi.p|Trimin1|353030 vs. uniprot
Match: A0A7R9YFC6_9STRA (Hypothetical protein n=1 Tax=Pinguiococcus pyrenoidosus TaxID=172671 RepID=A0A7R9YFC6_9STRA) HSP 1 Score: 123 bits (308), Expect = 7.370e-28 Identity = 94/290 (32.41%), Postives = 157/290 (54.14%), Query Frame = 1 Query: 103 KLAA---EVSTPFRTLRLFIYGAFATSALIGGLTACTQLAASVANQLDALPLSQCLLNVGVDFGVVAVCVYAYNFENKQRQGLVEQKRAEREQAALRKQSVIPEEVTKSRVERLRELQIRLTVSESETKNVPLGVLMQEAQHGLVLWHLEAKQDVVLVAG-GKEMLRDAMLRATVNREI-FTANNLLIVPVQVADPSDPTA---AVTDKGFGA-KPAYFKQGFVGEPAE--EDEWRALVAEEIRDADRQGNSKAAKQGVVLVVSRDGKVLRRGLGMPKWDMIRQDLYPNA 939 K+AA E+++PFR LR F+YGA +GGLTA +QL + +A P+SQ L NV +D VVAV V + ++ Q+ E KR + A R+ + + ++ L ELQ+ L+V E + P G + +A+ +L +A Q VV+ A E +++ +++A + E F++ N+L+VPV++ + +KGFG+ + +Q +V PA E W + +E+ DA+ QG +AAK+G + V ++ V RRGLG+P W+ + +L +A Sbjct: 63 KMAAFQEEITSPFRGLRFFLYGAGFLGGGLGGLTALSQLIGGLGGGANAPPVSQSLQNVAIDLAVVAVAVLGWRADSTQQ----EAKREALKTAGERRSGAVTDSDAAEKLRMLCELQVLLSVDEQDA---PKGAVGLKAKLDDMLG--QANQGVVVFATTSAERMKEVLVKAQILGEPEFSSKNVLVVPVEMEKLRQAVRGGRSTENKGFGSTSQIWLEQSYVAPPAPGAEKAWLEYIEKELADAEAQGAKEAAKEGFAICVRKNKTVARRGLGVPIWEDVLSELNASA 343 The following BLAST results are available for this feature:
BLAST of jgi.p|Trimin1|353030 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90) Total hits: 25
Pagesback to topAlignments
The following features are aligned
Analyses
This mRNA is derived from or has results from the following analyses
Properties
Relationships
This mRNA is a part of the following gene feature(s):
The following polypeptide feature(s) derives from this mRNA:
The following exon feature(s) are a part of this mRNA:
The following CDS feature(s) are a part of this mRNA:
The following three_prime_UTR feature(s) are a part of this mRNA:
Sequences
The following sequences are available for this feature:
spliced messenger RNA >mRNA_13375 ID=mRNA_13375|Name=jgi.p|Trimin1|353030|organism=Tribonema minus UTEX_B_3156 |type=mRNA|length=1350bp|location=Sequence derived from alignment at Contig_141:172141..176900+ (Tribonema minus UTEX_B_3156 )|Notes=Excludes all bases but those of type(s): exon. ATGGCGAAGGGCAAGATCTTGGAGAATTTGAGGGAGGAAGAAGAAAGCAAback to top protein sequence of jgi.p|Trimin1|353030 >Trimin1|353030|estExt_Genemark1.C_Ctg_1410030 ID=Trimin1|353030|estExt_Genemark1.C_Ctg_1410030|Name=jgi.p|Trimin1|353030|organism=Tribonema minus UTEX_B_3156 |type=polypeptide|length=325bp MAKGKILENLREEEESNSTATPAEQDDRGSFDKSKLAAEVSTPFRTLRLFback to top mRNA from alignment at Contig_141:172141..176900+ Legend: polypeptideexonCDSthree_prime_UTR Hold the cursor over a type above to highlight its positions in the sequence below.>mRNA_13375 ID=mRNA_13375|Name=jgi.p|Trimin1|353030|organism=Tribonema minus UTEX_B_3156 |type=mRNA|length=4760bp|location=Sequence derived from alignment at Contig_141:172141..176900+ (Tribonema minus UTEX_B_3156 )back to top Coding sequence (CDS) from alignment at Contig_141:172141..176900+ >mRNA_13375 ID=mRNA_13375|Name=jgi.p|Trimin1|353030|organism=Tribonema minus UTEX_B_3156 |type=CDS|length=975bp|location=Sequence derived from alignment at Contig_141:172141..176900+ (Tribonema minus UTEX_B_3156 )back to top |