mRNA_13375 (mRNA) Tribonema minus UTEX_B_3156

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
Namejgi.p|Trimin1|353030
Unique NamemRNA_13375
TypemRNA
OrganismTribonema minus UTEX_B_3156 (Tribonema minus UTEX_B_3156 )
Homology
BLAST of jgi.p|Trimin1|353030 vs. uniprot
Match: A0A835Z880_9STRA (Uncharacterized protein n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A835Z880_9STRA)

HSP 1 Score: 613 bits (1580), Expect = 6.120e-219
Identity = 324/324 (100.00%), Postives = 324/324 (100.00%), Query Frame = 1
Query:    1 MAKGKILENLREEEESNSTATPAEQDDRGSFDKSKLAAEVSTPFRTLRLFIYGAFATSALIGGLTACTQLAASVANQLDALPLSQCLLNVGVDFGVVAVCVYAYNFENKQRQGLVEQKRAEREQAALRKQSVIPEEVTKSRVERLRELQIRLTVSESETKNVPLGVLMQEAQHGLVLWHLEAKQDVVLVAGGKEMLRDAMLRATVNREIFTANNLLIVPVQVADPSDPTAAVTDKGFGAKPAYFKQGFVGEPAEEDEWRALVAEEIRDADRQGNSKAAKQGVVLVVSRDGKVLRRGLGMPKWDMIRQDLYPNAKVDDMGRRLVE 972
            MAKGKILENLREEEESNSTATPAEQDDRGSFDKSKLAAEVSTPFRTLRLFIYGAFATSALIGGLTACTQLAASVANQLDALPLSQCLLNVGVDFGVVAVCVYAYNFENKQRQGLVEQKRAEREQAALRKQSVIPEEVTKSRVERLRELQIRLTVSESETKNVPLGVLMQEAQHGLVLWHLEAKQDVVLVAGGKEMLRDAMLRATVNREIFTANNLLIVPVQVADPSDPTAAVTDKGFGAKPAYFKQGFVGEPAEEDEWRALVAEEIRDADRQGNSKAAKQGVVLVVSRDGKVLRRGLGMPKWDMIRQDLYPNAKVDDMGRRLVE
Sbjct:    1 MAKGKILENLREEEESNSTATPAEQDDRGSFDKSKLAAEVSTPFRTLRLFIYGAFATSALIGGLTACTQLAASVANQLDALPLSQCLLNVGVDFGVVAVCVYAYNFENKQRQGLVEQKRAEREQAALRKQSVIPEEVTKSRVERLRELQIRLTVSESETKNVPLGVLMQEAQHGLVLWHLEAKQDVVLVAGGKEMLRDAMLRATVNREIFTANNLLIVPVQVADPSDPTAAVTDKGFGAKPAYFKQGFVGEPAEEDEWRALVAEEIRDADRQGNSKAAKQGVVLVVSRDGKVLRRGLGMPKWDMIRQDLYPNAKVDDMGRRLVE 324          
BLAST of jgi.p|Trimin1|353030 vs. uniprot
Match: A0A6H5JEG6_9PHAE (Uncharacterized protein n=2 Tax=Ectocarpus TaxID=2879 RepID=A0A6H5JEG6_9PHAE)

HSP 1 Score: 217 bits (552), Expect = 1.930e-62
Identity = 135/308 (43.83%), Postives = 192/308 (62.34%), Query Frame = 1
Query:   37 EEESNSTATPAEQDDRGSFDKSKLAAEVSTPFRTLRLFIYGAFATSALIGGLTACTQLAASVANQLDALPLSQCLLNVGVDFGVVAVCVYAYNFENKQRQGLVEQKRAEREQAALRKQSVIPEEVTKSRVERLRELQIRLTVSESET-----KNVPLGVLMQEAQHGLVLWHLEAKQDVVLVAGGKEMLRDAMLRATVNR-EIFTANNLLIVPVQVADPSDPTAAV-TDKGFGAKPAYFKQGFVGEPAEEDEWRALVAEEIRDADRQG--NSKAAKQGVVLVVSRDGKVLRRGLGMPKWDMIRQDLYP 933
            +E+ +  ATPA       F+  KL AE  TPFRT R+FIYGAF  SALIGG+T+ TQLAA++++Q  AL L + L+N+ VDFGV+A   + YNFE  Q++ L + + A RE+    K + I  +V   RV++LR L +++  S +       K  P+GVLM EA           KQ   ++AGGKE +RD++L A + + +IF + NLL+VPV++   SD   A    KGFG   +Y +QG+V  P +ED WRAL+ EE   A+RQG     + K G+VL+VS+ GKVLRRG+G+P W++IR D+ P
Sbjct:  110 DEQDDEVATPA-------FNIDKLKAETKTPFRTFRIFIYGAFGVSALIGGITSLTQLAATLSDQPGALELQKVLINLLVDFGVMAAAAFCYNFETSQQEDLEQVEAANREKRQKLKATKITSDVNADRVKQLRALSVKVPGSGNGAELEGAKEAPVGVLMDEA-----------KQAFCVLAGGKEFVRDSILAAMLAKNQIFPSLNLLVVPVEMEVASDGKGAKGLAKGFGTSLSYEEQGYVAAPVDEDGWRALMREEFEAAERQGVVAQSSGKDGIVLLVSKKGKVLRRGVGIPMWNIIRDDVDP 399          
BLAST of jgi.p|Trimin1|353030 vs. uniprot
Match: A0A4D9D4V0_9STRA (Uncharacterized protein n=1 Tax=Nannochloropsis salina CCMP1776 TaxID=1027361 RepID=A0A4D9D4V0_9STRA)

HSP 1 Score: 159 bits (401), Expect = 2.700e-41
Identity = 103/296 (34.80%), Postives = 155/296 (52.36%), Query Frame = 1
Query:  103 KLAAEVSTPFRTLRLFIYGAFATSALIGGLTACTQLAASVANQLDALPLSQCLLNVGVDFGVVAVCVYAYNFENKQRQGLVEQKRAEREQAALRKQSVIPEEVTKSRVERLRELQIRLTVSESETKNVPLGVLMQEAQHGLVLWHLEAKQDVVLVAGGKEMLRDAMLRATVNREIFTANNLLIVPVQVADPSDPTA----------AVTDKGFGAKPAYF-KQGFVGEPAEEDEWRALVAEEIRDADRQGNSKAAKQGVVLVVSRDGKVLRRGLGMPKWDMIRQDLYPNAKVDDMG 957
            KL +E + PFR+LRLFIYG     A +GG TA TQL  S+ ++ DALPLSQ +LNVGVDFGV A    A+ FEN+ +Q   ++ +A R +   R    +  ++ K+R   L  L +   V  +ETK+  +  L ++             Q ++++A  K  L DA+  A V + +F  NN++I P  +   +D              ++DK  G K A    + +V +PAE   W   + EE+ DA RQGN  A K G+ +V+ +DG ++RRGLG P W  +  +L       + G
Sbjct:   20 KLRSEATAPFRSLRLFIYGGIGVGASLGGYTAVTQLVQSLQHRPDALPLSQSILNVGVDFGVAAAAAGAWVFENRLKQVTDKEMQALRAKEPFR----LTFDMKKARERALSGLPVTFKVGLNETKSASVKDLREKGG-----------QHLIVLAAPKGELADALFGARVGKTLFAKNNVMIAPFVIQGGNDKAGEEASSVKGFGGMSDKATGMKEAMIDSEAYVAKPAESASWATYIDEELEDAVRQGNEIARKTGIGIVMRKDGSIIRRGLGQPDWKEVVAELTGAKGTSEFG 300          
BLAST of jgi.p|Trimin1|353030 vs. uniprot
Match: W7TV54_9STRA (Uncharacterized protein n=2 Tax=Nannochloropsis gaditana TaxID=72520 RepID=W7TV54_9STRA)

HSP 1 Score: 160 bits (405), Expect = 2.490e-40
Identity = 102/296 (34.46%), Postives = 157/296 (53.04%), Query Frame = 1
Query:  103 KLAAEVSTPFRTLRLFIYGAFATSALIGGLTACTQLAASVANQLDALPLSQCLLNVGVDFGVVAVCVYAYNFENKQRQGLVEQKRAEREQAALRKQSVIPEEVTKSRVERLRELQIRLTVSESETKNVPLGVLMQEAQHGLVLWHLEAKQDVVLVAGGKEMLRDAMLRATVNREIFTANNLLIVPVQVADPSDPTA----------AVTDKGFGAKPAYF-KQGFVGEPAEEDEWRALVAEEIRDADRQGNSKAAKQGVVLVVSRDGKVLRRGLGMPKWDMIRQDLYPNAKVDDMG 957
            KL +E +TPFR+LRLFIYG     A +GG TA TQL  S+ ++ DALPLSQ +LNVGVDFGV A    A+ FEN+ +Q   ++ +A R +   R    +  ++ K+R   L  L +   V  +ET++  +  L ++             Q ++++A  K  L DA+  A V + +F  NN++I P  +   +D T            ++DK  G K A    + +V +PA+   W   + EE+ DA RQGN KA   G+ +V+ +DG ++RRG+G P W  +  +L       + G
Sbjct:  192 KLRSEATTPFRSLRLFIYGGIGVGASLGGYTAVTQLVQSLQHRPDALPLSQSILNVGVDFGVAAAAAGAWVFENRLKQVTDKEMQALRAKEPFR----LTFDMKKARERALSGLPVTFKVGLNETRSASVKDLREKGG-----------QHLIVLAAPKGELADALFGARVGKTLFAKNNVMIAPFVIQGGNDKTGEEAIGVKGFGGMSDKATGMKEAMIDSEAYVAKPADSASWATYIDEELEDAVRQGNEKARNTGIGIVMRKDGSIIRRGVGQPDWKEVVAELTGAKGTSEFG 472          
BLAST of jgi.p|Trimin1|353030 vs. uniprot
Match: A0A7S4A636_9STRA (Hypothetical protein n=2 Tax=Pelagomonas calceolata TaxID=35677 RepID=A0A7S4A636_9STRA)

HSP 1 Score: 150 bits (379), Expect = 5.240e-38
Identity = 106/282 (37.59%), Postives = 146/282 (51.77%), Query Frame = 1
Query:   97 KSKLAAEVSTPFRTLRLFIYGAFATSALIGGLTACTQLAASVANQLDALPLSQCLLNVGVDFGVVAVCVYAYNFENKQRQGLVEQKRAEREQAALRKQSVIPEEVTKSRVERLRELQIRLTVSESETKNVPLGVLMQEAQHGLVLWHLEAKQDVVLVAGGKEMLRDAMLRATVNREIFTANNLLIVPVQVADPSDPTAAVTDKGFGAKPAYFKQGFVGEPAEEDEWRALVAEEIRDADRQGNSKAAKQGVVLVVSRDGKVLRRGLGMPKWDMIRQDLYPNAK 942
            K+KL  E  +P+RT+R FIYGAFA SA +GGLTA TQLAA+V+ Q DALPL Q + NV VDFGVVA C Y    +     GL E   A          + I +E   + +  L++L++  TV+     NV                   A Q VV+VAG   ++ DA+  A + ++   A  +L+VPV+ +      AA+     G +   +  GFV  P +  +W+A  A E   A  QG   AA+ G+V+ V  DG V RRGLG P W M+  +L P  K
Sbjct:   77 KAKLLQEAESPWRTVRKFIYGAFALSATVGGLTALTQLAAAVSKQPDALPLEQTIQNVVVDFGVVAACAYGAKVDGAADSGLEEDDGAP--------STTIDDEAIAANLATLQKLEV--TVAGERVANVET-------------LRTAANQAVVVVAGPSSVVDDALRDALIEQKTLAAAEVLVVPVRTSAEDAVEAAM-----GRRSDSY--GFVAPPVDAAKWKAYAAAECAVAAGQGAETAAEDGIVIAVRADGTVARRGLGKPVWKMVAAELSPPKK 328          
BLAST of jgi.p|Trimin1|353030 vs. uniprot
Match: A0A7S2M8S3_9STRA (Hypothetical protein n=1 Tax=Skeletonema marinoi TaxID=267567 RepID=A0A7S2M8S3_9STRA)

HSP 1 Score: 136 bits (343), Expect = 9.310e-33
Identity = 94/279 (33.69%), Postives = 145/279 (51.97%), Query Frame = 1
Query:  103 KLAAEVSTPFRTLRLFIYGAFATSALIGGLTACTQLAASVANQLDALPLSQCLLNVGVDFGVVAVCVYAYNFENKQRQGL---VEQKRAEREQAALRKQSVIPEEVTKSRVERLRELQIRLTVSES-ETKNVPLGVLMQEAQHGLVLWHLEAKQDVVLVAGGKEMLRDAMLRATVNREIFTANNLLIVPVQVADPSDPTAAVTDKGFGAKPAYFKQGFVGEPAEEDEWRALVAEEIRDADRQGNSKAAKQGVVLVVSRDGKVLRRGLGMPKWDMIRQDL 927
            KL AE   PFR LRLF Y AFA+ A +GGL   + +AA+++     + L+   LN+G+DFG VA+      F+  + + L   VE K  ER++A  +  S +     K R ++L +L I + V+E  +TK   +G +   A           KQ +++VAG    +RDA+  A +N+  F   N+L+VP +        A+    GFG +P Y  Q +V E   E  W + +  E+  A  Q   K  ++G+ LV++ DGKVLRRG+G   W  +  +L
Sbjct:   64 KLLAETIAPFRGLRLFFYAAFASGAFVGGLITASGVAAALSGVRTDVDLNTEYLNLGIDFGAVALFAVLAKFDLNKGEELNAAVEAK-VERKKAMKKITSAM-----KEREQQLADLNINVRVTEEGDTKTATMGTMQSMA-----------KQHIIMVAGPGRAIRDALRGAQLNKVNFAMTNILVVPYETGLDEAARASKPSGGFGDRPTYETQAYVAEAVGEG-WESFIEAEMETAAEQAGEKVREEGIALVIANDGKVLRRGVGRVPWRQMVDEL 324          
BLAST of jgi.p|Trimin1|353030 vs. uniprot
Match: A0A7S1TN68_9STRA (Hypothetical protein n=1 Tax=Phaeomonas parva TaxID=124430 RepID=A0A7S1TN68_9STRA)

HSP 1 Score: 129 bits (324), Expect = 1.270e-29
Identity = 95/290 (32.76%), Postives = 153/290 (52.76%), Query Frame = 1
Query:  115 EVSTPFRTLRLFIYGAFATSALIGGLTACTQLAASVANQLDALPLSQCLLNVGVDFGVVAVCVYAYNFENKQRQGLVEQKRAEREQAALRKQSVIPEEVTKSRVERLRELQIRLTVSESETKNVPLGVLMQEAQHGLVLWHLEAKQD----------VVLVAGGKEMLRDAMLRATV-NREIFTANNLLIVPVQV-----ADPSDPTAAVTDKGFGA-KPAYFKQGFVGEPAE--EDEWRALVAEEIRDADRQGNSKAAKQGVVLVVSRDGKVLRRGLGMPKWDMIRQDL 927
            E+++PFR LR F+YGA      +G LTA +QLAA V+    A  +++   N  +DF VVA  +  + F++KQR    EQK    E    R +  + ++   +++  LREL + L++++++   VP G    E   GL     +AK D          VV  +   E +++A+++A +   + F   N+LIVPV++     A      A+   KGFGA  P + +QG+V  PA   E  W   V +EI DA+ QG    AK+G+ + + ++  V RRGLG+P W+ +  +L
Sbjct:  125 EITSPFRGLRFFVYGAGFLGGGVGFLTALSQLAAGVSGVEGAPEVAKSATNAAIDFAVVAAAIAGWRFDSKQR----EQKIGALEDVETRNRGKVTDDAATAKLAALRELNVMLSIADAD---VPEGFSAPEGAVGL-----KAKVDDLLGKASSSVVVFASTSGERVKEALVKAQILGEQEFLNKNVLIVPVELEKLRRAARGAAGASTEKKGFGATSPVWMEQGYVAPPAPGTEKAWLEYVEQEIADAEAQGAVNPAKEGIAICLRKNKTVSRRGLGVPLWEDVINEL 402          
BLAST of jgi.p|Trimin1|353030 vs. uniprot
Match: A0A7S2N0T1_9STRA (Hypothetical protein n=2 Tax=Helicotheca tamesis TaxID=374047 RepID=A0A7S2N0T1_9STRA)

HSP 1 Score: 127 bits (320), Expect = 1.920e-29
Identity = 86/279 (30.82%), Postives = 148/279 (53.05%), Query Frame = 1
Query:   97 KSKLAAEVSTPFRTLRLFIYGAFATSALIGGLTACTQLAASVANQLDALPLSQCLLNVGVDFGVVAVCVYAYNFENKQRQGLVE--QKRAEREQAALRKQSVIPEEVTKSRVERLRELQIRLTVSESETKNVPLGVLMQEAQHGLVLWHLEAKQDVVLVAGGKEMLRDAMLRATVNREIFTANNLLIVPVQVADPSDPTAAVTDKGFGAKPAYFKQGFVGEPAEEDEWRALVAEEIRDADRQGNSKAAKQGVVLVVSRDGKVLRRGLGMPKWDMIRQDL 927
            +SKL  E   P+RTLRLF+Y +  + AL+GG    + +AA ++   D + L+   LN+ +DFG      +   ++  +   L E  +K+ ER++   +  + + E     R +RL +L + + VS+           +Q            AKQ +V+VAG ++ +RDA+L A   +  F   NLL+VP ++++ ++     +  GFG +PAY  Q +V E    D W   + EE+ DA +QG  K  ++G+ +V++ DGKV+RRG+G   W  + ++L
Sbjct:   81 RSKLLTESIAPWRTLRLFLYASLGSGALLGGFITLSGVAAFLSGVRDDVDLNTEYLNLAIDFGAAIAFAFLAKWDFDKGAELSENVEKKLERKKEQRKITNAMRE-----REDRLSKLSLNVRVSDGGDMQTATVSALQSG----------AKQHMVIVAGNRKAIRDALLGANFLKMEFAVRNLLVVPYEISEETEKQVRPSG-GFGERPAYETQPYVAEVVG-DGWEEYIEEEMIDAVKQGGEKVKEEGIAIVLANDGKVIRRGVGTVPWRKMVEEL 342          
BLAST of jgi.p|Trimin1|353030 vs. uniprot
Match: F0Y9V5_AURAN (C2 domain-containing protein n=1 Tax=Aureococcus anophagefferens TaxID=44056 RepID=F0Y9V5_AURAN)

HSP 1 Score: 130 bits (326), Expect = 1.030e-28
Identity = 100/299 (33.44%), Postives = 151/299 (50.50%), Query Frame = 1
Query:   97 KSKLAAEVSTPFRTLRLFIYGAFATSALIGGLTACTQLAASVANQLDALPLSQCLLNVGVDFGVVAVCVYAYNFENKQRQGLVEQKRAEREQAALRKQSVIPEEVTKSRVERLRELQIRLTVSESETKNVPLGVLMQEAQHGLVLWHLEAKQDVVLVAGGKEMLRDAMLRATVNREIFTANNLLIVPVQVADPSDPTAAVTDKGFGAKPA-----YFKQGFVGEPAEEDE--WRALVAEEIRDADRQGNSKAAKQGVVLVVSRDGKVLRRGLGMPKWDMIRQDLYPNAKVDDMGRRLVE 972
            KSKL  E  TP+RT+R F YGAF  SA +GG+TA  Q AASVA Q DALPLSQC +NV VD GVVA C+Y  + +N +   +              + + + ++V ++R + + +L++          +V LG L + A   +     +A Q VV++ G +  + DA+L A + R  F     ++VPV++           D G GA PA       +  FV  P  +D   WR+ + +E+  A  QG   +A  GVV+ + RDG V  R +G P W  +   +   A+V   G   ++
Sbjct:   51 KSKLLQEAQTPWRTVRTFFYGAFGLSATVGGITALAQTAASVAGQPDALPLSQCGVNVLVDAGVVAACLYGNSVDNGEAADIT----------VADETAPLADDVAEARRDAVAKLRV----------DVGLGDLKRSA--AVRTLQRDAGQAVVVLGGPRAAVDDALLDALIQRNAFARAECVVVPVRL-----------DDGAGAAPATNALTVDEAPFVALPNADDAAAWRSYLEDELATAADQGADTSA--GVVVALRRDGTVASRNVGKPPWPQLIAAIDAKAEVAANGHATMD 314          
BLAST of jgi.p|Trimin1|353030 vs. uniprot
Match: A0A7R9YFC6_9STRA (Hypothetical protein n=1 Tax=Pinguiococcus pyrenoidosus TaxID=172671 RepID=A0A7R9YFC6_9STRA)

HSP 1 Score: 123 bits (308), Expect = 7.370e-28
Identity = 94/290 (32.41%), Postives = 157/290 (54.14%), Query Frame = 1
Query:  103 KLAA---EVSTPFRTLRLFIYGAFATSALIGGLTACTQLAASVANQLDALPLSQCLLNVGVDFGVVAVCVYAYNFENKQRQGLVEQKRAEREQAALRKQSVIPEEVTKSRVERLRELQIRLTVSESETKNVPLGVLMQEAQHGLVLWHLEAKQDVVLVAG-GKEMLRDAMLRATVNREI-FTANNLLIVPVQVADPSDPTA---AVTDKGFGA-KPAYFKQGFVGEPAE--EDEWRALVAEEIRDADRQGNSKAAKQGVVLVVSRDGKVLRRGLGMPKWDMIRQDLYPNA 939
            K+AA   E+++PFR LR F+YGA      +GGLTA +QL   +    +A P+SQ L NV +D  VVAV V  +  ++ Q+    E KR   + A  R+   + +     ++  L ELQ+ L+V E +    P G +  +A+   +L   +A Q VV+ A    E +++ +++A +  E  F++ N+L+VPV++           +  +KGFG+    + +Q +V  PA   E  W   + +E+ DA+ QG  +AAK+G  + V ++  V RRGLG+P W+ +  +L  +A
Sbjct:   63 KMAAFQEEITSPFRGLRFFLYGAGFLGGGLGGLTALSQLIGGLGGGANAPPVSQSLQNVAIDLAVVAVAVLGWRADSTQQ----EAKREALKTAGERRSGAVTDSDAAEKLRMLCELQVLLSVDEQDA---PKGAVGLKAKLDDMLG--QANQGVVVFATTSAERMKEVLVKAQILGEPEFSSKNVLVVPVEMEKLRQAVRGGRSTENKGFGSTSQIWLEQSYVAPPAPGAEKAWLEYIEKELADAEAQGAKEAAKEGFAICVRKNKTVARRGLGVPIWEDVLSELNASA 343          
The following BLAST results are available for this feature:
BLAST of jgi.p|Trimin1|353030 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
A0A835Z880_9STRA6.120e-219100.00Uncharacterized protein n=1 Tax=Tribonema minus Ta... [more]
A0A6H5JEG6_9PHAE1.930e-6243.83Uncharacterized protein n=2 Tax=Ectocarpus TaxID=2... [more]
A0A4D9D4V0_9STRA2.700e-4134.80Uncharacterized protein n=1 Tax=Nannochloropsis sa... [more]
W7TV54_9STRA2.490e-4034.46Uncharacterized protein n=2 Tax=Nannochloropsis ga... [more]
A0A7S4A636_9STRA5.240e-3837.59Hypothetical protein n=2 Tax=Pelagomonas calceolat... [more]
A0A7S2M8S3_9STRA9.310e-3333.69Hypothetical protein n=1 Tax=Skeletonema marinoi T... [more]
A0A7S1TN68_9STRA1.270e-2932.76Hypothetical protein n=1 Tax=Phaeomonas parva TaxI... [more]
A0A7S2N0T1_9STRA1.920e-2930.82Hypothetical protein n=2 Tax=Helicotheca tamesis T... [more]
F0Y9V5_AURAN1.030e-2833.44C2 domain-containing protein n=1 Tax=Aureococcus a... [more]
A0A7R9YFC6_9STRA7.370e-2832.41Hypothetical protein n=1 Tax=Pinguiococcus pyrenoi... [more]

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
Contig_141contigContig_141:172141..176900 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Tribonema minus UTEX_B_31562021-06-17
Properties
Property NameValue
ProteomeIdTrimin1|353030|estExt_Genemark1.C_Ctg_1410030
DescriptionProtein of unknown function (DUF3493)
COG categoryS
Max annot lvl2759|Eukaryota
EggNOG OGs2DEZ3@1|root,2S5R7@2759|Eukaryota
Evalue4.07e-65
Seed ortholog2880.D7FLE8
Hectar predicted targeting categoryother localisation
Ec32 ortholog descriptionProtein of unknown function DUF3493
Ec32 orthologEc-12_007890.1
TranscriptId353352
TrackFilteredModels1
ProteinId353030
Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesTypePosition
jgi.p|Trimin1|353030gene_13375Tribonema minus UTEX_B_3156 geneContig_141 172141..176900 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
jgi.p|Trimin1|353030Trimin1|353030|estExt_Genemark1.C_Ctg_1410030Tribonema minus UTEX_B_3156 polypeptideContig_141 172141..176525 +


The following exon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
exon_13375_1exon_13375_1Tribonema minus UTEX_B_3156 exonContig_141 172141..172278 +
exon_13375_2exon_13375_2Tribonema minus UTEX_B_3156 exonContig_141 172662..172846 +
exon_13375_3exon_13375_3Tribonema minus UTEX_B_3156 exonContig_141 173409..173592 +
exon_13375_4exon_13375_4Tribonema minus UTEX_B_3156 exonContig_141 174145..174177 +
exon_13375_5exon_13375_5Tribonema minus UTEX_B_3156 exonContig_141 174299..174406 +
exon_13375_6exon_13375_6Tribonema minus UTEX_B_3156 exonContig_141 175201..175317 +
exon_13375_7exon_13375_7Tribonema minus UTEX_B_3156 exonContig_141 175886..175983 +
exon_13375_8exon_13375_8Tribonema minus UTEX_B_3156 exonContig_141 176414..176900 +


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
CDS_13375CDS_13375Tribonema minus UTEX_B_3156 CDSContig_141 172141..172278 +


The following three_prime_UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
UTR3_13375UTR3_13375Tribonema minus UTEX_B_3156 three_prime_UTRContig_141 176526..176900 +


Sequences
The following sequences are available for this feature:

spliced messenger RNA

>mRNA_13375 ID=mRNA_13375|Name=jgi.p|Trimin1|353030|organism=Tribonema minus UTEX_B_3156 |type=mRNA|length=1350bp|location=Sequence derived from alignment at Contig_141:172141..176900+ (Tribonema minus UTEX_B_3156 )|Notes=Excludes all bases but those of type(s): exon.  
ATGGCGAAGGGCAAGATCTTGGAGAATTTGAGGGAGGAAGAAGAAAGCAA
TTCCACTGCAACGCCAGCAGAACAGGACGATCGGGGCTCGTTCGATAAGT
CCAAGCTGGCAGCTGAAGTGTCTACGCCATTTCGAACGCTGCGCCTGTTC
ATCTACGGCGCGTTCGCCACCAGCGCGCTCATCGGCGGGCTGACGGCATG
CACGCAGCTGGCGGCCAGCGTTGCCAACCAGTTGGACGCGCTGCCGCTGT
CGCAGTGCCTGCTCAACGTCGGCGTAGACTTTGGCGTGGTGGCGGTGTGC
GTGTACGCGTACAACTTTGAGAACAAGCAGCGGCAGGGGCTGGTGGAGCA
GAAGCGCGCTGAGCGCGAGCAGGCAGCGCTCCGCAAGCAGAGCGTCATCC
CCGAGGAGGTGACCAAGTCGCGCGTGGAGCGCCTCAGGGAGCTGCAGATC
CGGCTGACAGTTTCGGAGAGCGAAACCAAGAACGTGCCGCTGGGGGTGCT
GATGCAGGAGGCACAGCACGGCCTGGTGCTGTGGCACCTCGAGGCGAAGC
AGGACGTGGTGCTGGTGGCGGGCGGCAAGGAGATGCTTCGGGACGCCATG
CTGCGCGCCACTGTCAACAGGGAGATATTCACCGCCAACAACCTGCTGAT
TGTGCCGGTCCAGGTGGCAGATCCCAGCGATCCCACGGCTGCGGTGACCG
ACAAGGGGTTCGGAGCAAAGCCAGCGTACTTCAAGCAGGGCTTCGTGGGG
GAGCCCGCTGAAGAGGATGAGTGGCGCGCCCTGGTCGCAGAGGAGATCCG
CGACGCCGACAGGCAGGGCAACAGCAAGGCGGCCAAGCAGGGCGTCGTGC
TGGTGGTCAGCAGGGACGGCAAGGTGCTGCGCAGGGGCCTGGGCATGCCG
AAGTGGGACATGATTCGCCAGGACCTGTATCCCAACGCCAAGGTCGACGA
CATGGGCCGCAGATTGGTGGAGTGAGACACGGCTGTCATGCTGACCGCGA
AGATTAGCACGCGCCGGTGCTTGCAAGCCTAAGGACTAGATTGAATGAGA
AAAGGACCTGCATGCCAGTGCCAGAGTGGCATCGATGGCGCAGATGCTCA
CACTAAAACCTTCCTGTGCCCCAGACATAGAACACTGGGGGAGGTGGGGG
GGTCCAACTCCGACAGCAGCAGGATGTTGATGAGCTTGTGAACGAGAGAC
AAGGAGTTGCATGCCATTGGCACTAGATTCGCCATCATTGGCAACCCCAA
GAGACCGTCATGTGCAGCCGCATTTGGAAGTCATTATTGGGGCTGACACA
TCCATCATAATTAGAATCACAAATGCAGAGGTACTTAATTTACACTCTTG
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protein sequence of jgi.p|Trimin1|353030

>Trimin1|353030|estExt_Genemark1.C_Ctg_1410030 ID=Trimin1|353030|estExt_Genemark1.C_Ctg_1410030|Name=jgi.p|Trimin1|353030|organism=Tribonema minus UTEX_B_3156 |type=polypeptide|length=325bp
MAKGKILENLREEEESNSTATPAEQDDRGSFDKSKLAAEVSTPFRTLRLF
IYGAFATSALIGGLTACTQLAASVANQLDALPLSQCLLNVGVDFGVVAVC
VYAYNFENKQRQGLVEQKRAEREQAALRKQSVIPEEVTKSRVERLRELQI
RLTVSESETKNVPLGVLMQEAQHGLVLWHLEAKQDVVLVAGGKEMLRDAM
LRATVNREIFTANNLLIVPVQVADPSDPTAAVTDKGFGAKPAYFKQGFVG
EPAEEDEWRALVAEEIRDADRQGNSKAAKQGVVLVVSRDGKVLRRGLGMP
KWDMIRQDLYPNAKVDDMGRRLVE*
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mRNA from alignment at Contig_141:172141..176900+

Legend: polypeptideexonCDSthree_prime_UTR
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_13375 ID=mRNA_13375|Name=jgi.p|Trimin1|353030|organism=Tribonema minus UTEX_B_3156 |type=mRNA|length=4760bp|location=Sequence derived from alignment at Contig_141:172141..176900+ (Tribonema minus UTEX_B_3156 )
ATGGCGAAGGGCAAGATCTTGGAGAATTTGAGGGAGGAAGAAGAAAGCAA TTCCACTGCAACGCCAGCAGAACAGGACGATCGGGGCTCGTTCGATAAGT CCAAGCTGGCAGCTGAAGTGTCTACGCCATTTCGAACGGTACGCAAAATC TATCGACTGGAGTTTTGACATTGCTGGTACGCATACCACTGGTTTTGCCT GTGTTGTCTGGTAGGCTAGTTGCCCTGATGCGGCAGTGATGCCAGGTTGG CGTGCTCCTCTCGGGTATTGCATGCAATGGCTGCCTTTGAGCTGCTCGCA CACGTCTGCGGTACCCCAATACGATGGCCTGAAATCATGCATCAGCAGTC CTTTAAGCATTCCTTTCAGGCAGCCTGCTACATGACAGCTCGCGTTCCCT GACAGTATCACGCACGCTCCTCATCCCCAAGCACCCCACATGTGCAAAGT ACGCAAGACTCGAACCACTCCTCGTTGCTTGTGTGCTCGCCCACTGCCGT ATTCGCGCGCCGACTCTGCAGCTGCGCCTGTTCATCTACGGCGCGTTCGC CACCAGCGCGCTCATCGGCGGGCTGACGGCATGCACGCAGCTGGCGGCCA GCGTTGCCAACCAGTTGGACGCGCTGCCGCTGTCGCAGTGCCTGCTCAAC GTCGGCGTAGACTTTGGCGTGGTGGCGGTGTGCGTGTACGCGTACAACTT TGAGAAGTGAGTGCCACGTGGGGCCGGCTTCTGCACGATATGTTTGACAC GTGCCCAATGACTGCAGCAGCGGCGACCACGGTTATTGGTGGAAGGCACT TGTGGCTAACCACTCCTTGTCACCTAGAGCTCTGCGATCTTTTGATTTGT TTCCATGTTCATGCAGGCAACAGGCCGTGTGCTGAGTAGACCCTTGCAGG CTGTGCGCAGGGTCTGCCCGCTCTCTGTTGCTCCCTTGGCACCACTTCGG AGCTTGCTGCTTGACGATGGACCTGCAACGCAAGTAGCCAGTTGTGATCA TCGATCGTGCCGACGGCCATGTAAGGCGGAGGCGCCTCACCAGACCCAAC TGCGCAAGAAGGTGCTGTACACGTGATGCTGCAGCGCAGTTCCAGCAGCG CTCAGAGCTATGTTCTCCCAACCCTTCAACACCGGGCGGCAAGCCACAAC GGCGTTCAAAAACATGCAACGGAACCGAGAAACACGTTTTCTTCGCTGAT TACTGAGCAATGATGACTGAGCAGTGCCTGTGCACCCGCGCCCCCCCCCC CCCTACGCGGCTGCGCAGCAAGCAGCGGCAGGGGCTGGTGGAGCAGAAGC GCGCTGAGCGCGAGCAGGCAGCGCTCCGCAAGCAGAGCGTCATCCCCGAG GAGGTGACCAAGTCGCGCGTGGAGCGCCTCAGGGAGCTGCAGATCCGGCT GACAGTTTCGGAGAGCGAAACCAAGAACGTGCCGCTGGGGGTGCTGATGC AGGTGCGTGGAAGGGGCGCGCGCGTTGACTCTGCAGGTCAGGAATGATGT GGCATTGGAAAAGGGCTGTTATTTGCCACTGGCGGCAGTGCAGTAACTGG AGCTGCGCTTGTTTGACCTGAGAATTGTCATGAAAGCCAGCTTTCTGTTC TCTTTGCATGTGCCAACAGCACCAGCAATGTGTGGCAGGCCAACGCGTCA TTACAGTATGTGATGAGTCACGTGGCTCAGCAGAACAGAGTACATCCGAT GCACGCAACTCAGGAAAGTCTTGCAGGCGGCAGCACATGAGTTTACATAA CATGATGCACTGCCGCTGCACAGTGGCAGCTCAGTCCCACAGGCAGCTAT TTCTTGCGGGTACAGCAGATGTGTCATGTGTCAGCAAGGGCAATGAGCAT CAGGCACTTTTGTGCAACTTCGGGCAGGCCATCTTGTGTAACTGCCATCA GCTCTAGAGGCCCTTGACCCCTCCGTCGCCAGTCATAGTGGTCCAGTGGT AGCTCATGCTAATGCATTCCTGCACCGGCCATGCGATTCCGCACTACGCG TCAGGAGGCACAGCACGGCCTGGTGCTGTGGCACCTCGTGCTCATGCCTT TTCTGCACTGGCACTGTGTTTGCTAGTCGCGCATCAGGCGGTGCTGTGGC ATCCTGTGCTCATGCCTTTTCCGCACTGCTGGCTGTACGATCGCTCGCCG CTCATCAGGAGGCGAAGCAGGACGTGGTGCTGGTGGCGGGCGGCAAGGAG ATGCTTCGGGACGCCATGCTGCGCGCCACTGTCAACAGGGAGATATTCAC CGCCAACAACCTGCTGGTGAGATGAGCACTGCTGCTGTCCGCTGCTGCTG ATCGCTGCTGCCAAGGCCGGGGGGGGGGGGGGGGGGGGGGGGGGCAAGAT TATGGCAAGATTATGAATAATGAAGTTCACTGACGTTGCCGATGAAGATG CAGGTTGCCGCAGTGCCTGATGTGAAACTTAGTGATCCCATCGGGCACGA GAACGAGACATTCAAGAACTGCGCTAATCCATGCACTTACTGAGAGACTT TCTGGGGGGGGGCGGCAGCCACCAATTGAGTTCCTTGCGCGCCAATGGTG ATACTATTAGAGTATGCAGCGCCTACAAAGAGTGAGCCGCCGTGGCAGAT GGCGCTTGCCACGTAACTGCATGAGGACTCCCGTGGCAGTGTAGCATAGC AGAAAGCAAAATGAGCGAGCGCAAATCACGCAATGCAGCGACACTCTACA GTCGCAGATGCTGCGTCAGTGCCCCACGAATTGAACTGGCATCGGCCCCA GTACAGGCACAGCATGTTGACCGTTGGTCACAGCCATGGCCCGCCAGCCC GTCTGCAGCGGTGCAGAGCAGGCCTTGCACATACCTACTAGCCCTGATTC CAACCCACCCATCCTTGAGCATAATGGAGTCGCGCCGTCTCACACCTGCG CATTTGCTATATGGTGCGCGAAATCTCAGAGCAACTGCAACGCTGGTCCG TGAGTGGCACAGCCTCGCAAGCATCGCTTGTCACACCTGCTGCGAAGGAT CTCATTGTGCCATGTTGACATCTGCCGCCGTGCCAATACTGGTTGATGCC GTGCTTGCAGATTGTGCCGGTCCAGGTGGCAGATCCCAGCGATCCCACGG CTGCGGTGACCGACAAGGGGTTCGGAGCAAAGCCAGCGTACTTCAAGCAG GGCTTCGTGGGGGAGCCCGCTGAAGAGGTGTGCACTGTTGAAGCTGAACT TTTGAGCAAGTTGAAGTTGGTAAATGCGAAGCACAACTGCTGGGCTTTAT TGCAGAATCTAGATTTTGGTATCATGCCGATGATGTTTGCCACAGTGTGG CTCAAAGTAAAGCAGGATGAGCCCATGTTTTGCAACAGTAAATCCAGAAC ACGACTGTTTTCGAAAGTGTGTTCTGGAACACCCCATGGGGTTATAGACA GCTTCAACCTGCGAATTGCTGGCAGCTTCGTTGCAACCCCCCCCCTTGCA CAGCGTGTATGTATGCACTGTCTTGTCTCGACTCCATGCTGCGGAGCCGC TTGCTGTGAACACAGCTCTGTTTCATCCTGTCAGTGCATCCCGTGCCTGT CAGTACGCGCGCAACGCGTGCACGATGTTTGAGCCGTAACCACACCCTAA CCCTTTCATTTCGAAACTCTACTCTGTCGCCGACGCACGCGTTGCGCGTC GCCATGATGATGTGTGAACCCCTACCCCTAACCCTAATTCAACAAACCTT GATCCGTCGCTCTCTGCATGCGACACACGCGTTGCGCGTCGCCAGGATGA GTGGCGCGCCCTGGTCGCAGAGGAGATCCGCGACGCCGACAGGCAGGGCA ACAGCAAGGCGGCCAAGCAGGGCGTCGTGCTGGTGGTCAGCAGGTGCGTC ACCCGAGGCATCTCACACTTCCACACTTCAACACAATGGGCGCAACTCTA GATCTGTTTTCATGCAGCTGAAGTGCGGTTTATCCTCCCATTTGCGCATG AGATGCCACCGGTCAGGCGCAGCAGGAAAGCAGATGTGCATTCATTGCCA TGAGTACACATTCGCTCAAGGCCGCCTGTTGTAGTGCTAAAAGAGGCACG AAAATAAGGGCCCCAAGCGCCCCTTCCTACGCGAGCGTCGAGGGAAAGCA AACTGGACTTTGCCCACCTAAAGTGGGCGACGCGATTGGGCAGGGGCCTT TTGATATGCTTTGAGCGTTTGGCACTTCTTTTTGCCCATTTTCACATCTG CGTTCAGATGTAGACGCCTCTGGTCACGAGTACTCATGCGCAAGCTGCGT GCACCCTCTTTGCGCCTCCCCAGGGACGGCAAGGTGCTGCGCAGGGGCCT GGGCATGCCGAAGTGGGACATGATTCGCCAGGACCTGTATCCCAACGCCA AGGTCGACGACATGGGCCGCAGATTGGTGGAGTGAGACACGGCTGTCATG CTGACCGCGAAGATTAGCACGCGCCGGTGCTTGCAAGCCTAAGGACTAGA TTGAATGAGAAAAGGACCTGCATGCCAGTGCCAGAGTGGCATCGATGGCG CAGATGCTCACACTAAAACCTTCCTGTGCCCCAGACATAGAACACTGGGG GAGGTGGGGGGGTCCAACTCCGACAGCAGCAGGATGTTGATGAGCTTGTG AACGAGAGACAAGGAGTTGCATGCCATTGGCACTAGATTCGCCATCATTG GCAACCCCAAGAGACCGTCATGTGCAGCCGCATTTGGAAGTCATTATTGG GGCTGACACATCCATCATAATTAGAATCACAAATGCAGAGGTACTTAATT TACACTCTTG
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Coding sequence (CDS) from alignment at Contig_141:172141..176900+

>mRNA_13375 ID=mRNA_13375|Name=jgi.p|Trimin1|353030|organism=Tribonema minus UTEX_B_3156 |type=CDS|length=975bp|location=Sequence derived from alignment at Contig_141:172141..176900+ (Tribonema minus UTEX_B_3156 )
ATGGCGAAGGGCAAGATCTTGGAGAATTTGAGGGAGGAAGAAGAAAGCAA
TTCCACTGCAACGCCAGCAGAACAGGACGATCGGGGCTCGTTCGATAAGT
CCAAGCTGGCAGCTGAAGTGTCTACGCCATTTCGAACGCTGCGCCTGTTC
ATCTACGGCGCGTTCGCCACCAGCGCGCTCATCGGCGGGCTGACGGCATG
CACGCAGCTGGCGGCCAGCGTTGCCAACCAGTTGGACGCGCTGCCGCTGT
CGCAGTGCCTGCTCAACGTCGGCGTAGACTTTGGCGTGGTGGCGGTGTGC
GTGTACGCGTACAACTTTGAGAACAAGCAGCGGCAGGGGCTGGTGGAGCA
GAAGCGCGCTGAGCGCGAGCAGGCAGCGCTCCGCAAGCAGAGCGTCATCC
CCGAGGAGGTGACCAAGTCGCGCGTGGAGCGCCTCAGGGAGCTGCAGATC
CGGCTGACAGTTTCGGAGAGCGAAACCAAGAACGTGCCGCTGGGGGTGCT
GATGCAGGAGGCACAGCACGGCCTGGTGCTGTGGCACCTCGAGGCGAAGC
AGGACGTGGTGCTGGTGGCGGGCGGCAAGGAGATGCTTCGGGACGCCATG
CTGCGCGCCACTGTCAACAGGGAGATATTCACCGCCAACAACCTGCTGAT
TGTGCCGGTCCAGGTGGCAGATCCCAGCGATCCCACGGCTGCGGTGACCG
ACAAGGGGTTCGGAGCAAAGCCAGCGTACTTCAAGCAGGGCTTCGTGGGG
GAGCCCGCTGAAGAGGATGAGTGGCGCGCCCTGGTCGCAGAGGAGATCCG
CGACGCCGACAGGCAGGGCAACAGCAAGGCGGCCAAGCAGGGCGTCGTGC
TGGTGGTCAGCAGGGACGGCAAGGTGCTGCGCAGGGGCCTGGGCATGCCG
AAGTGGGACATGATTCGCCAGGACCTGTATCCCAACGCCAAGGTCGACGA
CATGGGCCGCAGATTGGTGGAGTGA
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