mRNA_13361 (mRNA) Tribonema minus UTEX_B_3156

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
Namejgi.p|Trimin1|156212
Unique NamemRNA_13361
TypemRNA
OrganismTribonema minus UTEX_B_3156 (Tribonema minus UTEX_B_3156 )
Homology
BLAST of jgi.p|Trimin1|156212 vs. uniprot
Match: A0A835ZID9_9STRA (Polyketide_cyc domain-containing protein (Fragment) n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A835ZID9_9STRA)

HSP 1 Score: 309 bits (791), Expect = 2.240e-106
Identity = 157/157 (100.00%), Postives = 157/157 (100.00%), Query Frame = 1
Query:    1 KEYHERKLVRFTPQQVYSVVSDVANYKKFVPFCVDSRILRQVGPGSTTVDAELAVGFKVFTEKYTSRVTLKPPSVVAARAVDSRIFSELSSTWSFKPGPRDGTTYLSFDVEFEVKNPIAATAVNAFFEDVTQQQVKAFERRCKQLYGESNRESEAAV 471
            KEYHERKLVRFTPQQVYSVVSDVANYKKFVPFCVDSRILRQVGPGSTTVDAELAVGFKVFTEKYTSRVTLKPPSVVAARAVDSRIFSELSSTWSFKPGPRDGTTYLSFDVEFEVKNPIAATAVNAFFEDVTQQQVKAFERRCKQLYGESNRESEAAV
Sbjct:    1 KEYHERKLVRFTPQQVYSVVSDVANYKKFVPFCVDSRILRQVGPGSTTVDAELAVGFKVFTEKYTSRVTLKPPSVVAARAVDSRIFSELSSTWSFKPGPRDGTTYLSFDVEFEVKNPIAATAVNAFFEDVTQQQVKAFERRCKQLYGESNRESEAAV 157          
BLAST of jgi.p|Trimin1|156212 vs. uniprot
Match: A0A6H5KIH8_9PHAE (EF-hand domain-containing protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KIH8_9PHAE)

HSP 1 Score: 168 bits (426), Expect = 4.370e-47
Identity = 83/147 (56.46%), Postives = 109/147 (74.15%), Query Frame = 1
Query:    7 YHERKLVRFTPQQVYSVVSDVANYKKFVPFCVDSRILRQVGPGSTTVDAELAVGFKVFTEKYTSRVTLKPPSVVAARAVDSRIFSELSSTWSFKPGPRDGTTYLSFDVEFEVKNPIAATAVNAFFEDVTQQQVKAFERRCKQLYGES 447
            + ER++V + P+Q Y VV+DV NYK FVPFCVDSR+++ +     T++AE++VGFK+FTEKYTSRV  KPPS VA +A+ SR+FS L STW F+PG    TT + F VEFEVKN +AA A++ FF++V     KAFERRC+ LYG S
Sbjct:   47 HRERRVVPYLPEQFYGVVADVDNYKNFVPFCVDSRVVKVID--ENTMEAEMSVGFKLFTEKYTSRVVTKPPSEVAVKAMHSRLFSSLDSTWRFRPGTAPNTTVIDFSVEFEVKNLLAAQAMDMFFDEV-----KAFERRCRHLYGTS 186          
BLAST of jgi.p|Trimin1|156212 vs. uniprot
Match: A0A5J4XII3_9CHLO (Coenzyme Q-binding COQ10 mitochondrial-like n=1 Tax=Trebouxia sp. A1-2 TaxID=2608996 RepID=A0A5J4XII3_9CHLO)

HSP 1 Score: 145 bits (365), Expect = 3.030e-40
Identity = 69/150 (46.00%), Postives = 104/150 (69.33%), Query Frame = 1
Query:    1 KEYHERKLVRFTPQQVYSVVSDVANYKKFVPFCVDSRILRQVGPGSTTVDAELAVGFKVFTEKYTSRVTLKPPSVVAARAVDSRIFSELSSTWSFKPGPRDGTTYLSFDVEFEVKNPIAATAVNAFFEDVTQQQVKAFERRCKQLYGESN 450
            K+Y ER+L+ ++P+Q+Y VV++V +Y++FVP+C  S I+R+   G T ++AEL VGF++F E+YTS V LKP   V ++  DS +F  L STW FK GP   +T+L+F V+F  K+P+  +    FFE+V Q+ + AFE RCK +YG S+
Sbjct:   95 KDYKERRLIGYSPKQLYDVVAEVQHYREFVPWCQRSHIIRR--EGDTFLEAELEVGFRLFVERYTSEVYLKPGEQVISKVFDSTLFDHLDSTWDFKVGPSPSSTWLTFSVDFGFKSPLYRSVAAVFFEEVVQRMMAAFEGRCKVVYGASS 242          
BLAST of jgi.p|Trimin1|156212 vs. uniprot
Match: A0A8J9WPC4_9CHLO (Coenzyme Q-binding protein COQ10 homolog B, mitochondrial n=1 Tax=Coccomyxa sp. Obi TaxID=2315456 RepID=A0A8J9WPC4_9CHLO)

HSP 1 Score: 142 bits (358), Expect = 1.070e-39
Identity = 69/149 (46.31%), Postives = 102/149 (68.46%), Query Frame = 1
Query:    1 KEYHERKLVRFTPQQVYSVVSDVANYKKFVPFCVDSRILRQVGPGSTTVDAELAVGFKVFTEKYTSRVTLKPPSVVAARAVDSRIFSELSSTWSFKPGPRDGTTYLSFDVEFEVKNPIAATAVNAFFEDVTQQQVKAFERRCKQLYGES 447
            K+Y ER+L+ ++P+Q++ VV+ V +YK+FVP+C  S+I+++  P    V+AEL VGFK+F E+YTS+V L  P+ V +   DS +F  L STW FKPGP   +T+L F V+F  K+P+     + FF++V +  + AFE RCKQLYG S
Sbjct:   57 KQYQERRLIGYSPKQLFDVVAAVEHYKEFVPWCQRSQIIQEKPPDY--VEAELEVGFKLFVERYTSQVHLHRPNKVVSHVYDSTLFDHLDSTWEFKPGPTPSSTWLYFSVDFAFKSPLYRHIASVFFDEVVKHMMGAFEGRCKQLYGTS 203          
BLAST of jgi.p|Trimin1|156212 vs. uniprot
Match: A0A2V0PGC9_9CHLO (Polyketide_cyc domain-containing protein n=1 Tax=Raphidocelis subcapitata TaxID=307507 RepID=A0A2V0PGC9_9CHLO)

HSP 1 Score: 142 bits (357), Expect = 3.710e-39
Identity = 69/150 (46.00%), Postives = 104/150 (69.33%), Query Frame = 1
Query:    1 KEYHERKLVRFTPQQVYSVVSDVANYKKFVPFCVDSRILRQVGPGSTTVDAELAVGFKVFTEKYTSRVTLKPPSVVAARAVDSRIFSELSSTWSFKPGPRDGTTYLSFDVEFEVKNPIAATAVNAFFEDVTQQQVKAFERRCKQLYGESN 450
            K Y ER+L+ ++P+Q+YSVVS V  Y +FVP+CV S++LR    G   ++AEL VGF+VF E+YTS+VTL+ P+ V +   DSR+F  L STW  +PGP+ GTT+L F V+F  ++ +     + FF +V ++ + AFE RC+++YG S+
Sbjct:   28 KVYQERRLLGWSPEQLYSVVSRVDEYSRFVPWCVGSKVLRGGAEGGY-LEAELEVGFQVFVERYTSKVTLQAPNKVHSSVSDSRLFDHLESTWLLRPGPQPGTTWLVFKVDFAFRSALYRHVADLFFSEVVKRMIGAFEGRCREVYGPSS 176          
BLAST of jgi.p|Trimin1|156212 vs. uniprot
Match: I0Z0V0_COCSC (Polyketide_cyc domain-containing protein n=1 Tax=Coccomyxa subellipsoidea (strain C-169) TaxID=574566 RepID=I0Z0V0_COCSC)

HSP 1 Score: 142 bits (359), Expect = 5.250e-39
Identity = 70/149 (46.98%), Postives = 99/149 (66.44%), Query Frame = 1
Query:    1 KEYHERKLVRFTPQQVYSVVSDVANYKKFVPFCVDSRILRQVGPGSTTVDAELAVGFKVFTEKYTSRVTLKPPSVVAARAVDSRIFSELSSTWSFKPGPRDGTTYLSFDVEFEVKNPIAATAVNAFFEDVTQQQVKAFERRCKQLYGES 447
            K Y ER+L+ ++P+Q+Y VV+ V +YK+FVP+C  S I+++  P    V+AEL VGFK+F E+YTS+V L  P  V +   DS +F  L STW FKPGP  G+T+L F V+F  K+P+     + FF++V +  + AFE RCK LYG S
Sbjct:  131 KHYQERRLIGYSPKQLYDVVAAVEHYKEFVPWCQRSEIIQERPPDF--VEAELEVGFKLFVERYTSQVHLHRPGKVVSHVYDSTLFDHLDSTWEFKPGPTPGSTWLFFSVDFAFKSPLYRHIASVFFDEVVKHMMGAFEGRCKHLYGSS 277          
BLAST of jgi.p|Trimin1|156212 vs. uniprot
Match: A0A7J7PJE1_9CHLO (Polyketide_cyc domain-containing protein n=1 Tax=Scenedesmus sp. NREL 46B-D3 TaxID=2650976 RepID=A0A7J7PJE1_9CHLO)

HSP 1 Score: 142 bits (358), Expect = 1.220e-38
Identity = 67/147 (45.58%), Postives = 100/147 (68.03%), Query Frame = 1
Query:    1 KEYHERKLVRFTPQQVYSVVSDVANYKKFVPFCVDSRILRQVGPGSTTVDAELAVGFKVFTEKYTSRVTLKPPSVVAARAVDSRIFSELSSTWSFKPGPRDGTTYLSFDVEFEVKNPIAATAVNAFFEDVTQQQVKAFERRCKQLYG 441
            K Y+ER+L+ ++P+Q+Y VVS V +Y +FVP+CV S +LR+  P ++ ++AEL +GF++ +E+YTSRV L+ P +V +   DS +F  L STW  +PGP   +T+LSF V+F   NP+ A     FF +V  + + AFE RCK LYG
Sbjct:  114 KAYNERRLIGYSPEQLYEVVSQVQHYYQFVPWCVGSNVLRR-SPDNSYLEAELKIGFQMISERYTSRVKLQAPHLVTSSVADSALFHHLESTWRLQPGPHPHSTWLSFSVDFAFLNPLYANIAQLFFSEVVTRMMGAFEGRCKHLYG 259          
BLAST of jgi.p|Trimin1|156212 vs. uniprot
Match: A0A2P6U320_CHLSO (Coenzyme Q-binding COQ10 mitochondrial-like n=1 Tax=Chlorella sorokiniana TaxID=3076 RepID=A0A2P6U320_CHLSO)

HSP 1 Score: 140 bits (352), Expect = 3.760e-38
Identity = 69/150 (46.00%), Postives = 106/150 (70.67%), Query Frame = 1
Query:    1 KEYHERKLVRFTPQQVYSVVSDVANYKKFVPFCVDSRILRQVGPGSTTVDAELAVGFKVFTEKYTSRVTLKPPSVVAARAVDSRIFSELSSTWSFKPGPRDGTTYLSFDVEFEVKNPIAATAVNAFFEDVTQQQVKAFERRCKQLYGESN 450
            K +HE+KL+ ++P+QVY VV+ V +Y +FVP+C  S +L +  PG   ++AEL VGF++F E+YTS+VTL+ P+ V +R  DS +FS L++ W F+ GP   TT+L+F+V+F  K+P+     + FFE+V Q+ + AFE RC Q+YG S+
Sbjct:  111 KRHHEKKLLGWSPRQVYDVVAAVEHYSQFVPWCQRSTVLLRRPPGY--LEAELEVGFQMFVERYTSKVTLQCPTAVHSRVDDSTLFSYLTNKWEFRLGPTPHTTWLTFEVDFAFKSPLYRQVASIFFEEVVQRMMGAFEGRCAQVYGPSS 258          
BLAST of jgi.p|Trimin1|156212 vs. uniprot
Match: A0A5A8EEH9_CAFRO (Polyketide_cyc domain-containing protein n=2 Tax=Cafeteria roenbergensis TaxID=33653 RepID=A0A5A8EEH9_CAFRO)

HSP 1 Score: 140 bits (352), Expect = 1.890e-37
Identity = 67/148 (45.27%), Postives = 105/148 (70.95%), Query Frame = 1
Query:    7 YHERKLVRFTPQQVYSVVSDVANYKKFVPFCVDSRILRQVGPGSTTVDAELAVGFKVFTEKYTSRVTLKPPSVVAARAVDSRIFSELSSTWSFKPGPRDGTTYLSFDVEFEVKNPIAATAVNAFFEDVTQQQVKAFERRCKQLYGESN 450
            + ER+++R +P+ VY+VVSDVA Y +FVP+CV S ++ +  P  T ++AELAVGF++FTE+Y S+VT++ P+ V A A ++++F  L + W F+PGP  GTT+L F V+F  K+ + A A   F ++V ++ V AFE RC +LYG ++
Sbjct:   52 HKERRIMRHSPEDVYAVVSDVARYHEFVPWCVGSDVISR--PSDTYMEAELAVGFRMFTERYLSKVTMQHPAHVRAVAANTQLFRSLVNEWRFRPGPEPGTTWLEFRVDFAFKSALYAQASALFQDEVARRMVSAFEHRCDELYGRAS 197          
BLAST of jgi.p|Trimin1|156212 vs. uniprot
Match: A0A383VYA6_TETOB (Polyketide_cyc domain-containing protein n=1 Tax=Tetradesmus obliquus TaxID=3088 RepID=A0A383VYA6_TETOB)

HSP 1 Score: 139 bits (351), Expect = 3.340e-37
Identity = 66/147 (44.90%), Postives = 99/147 (67.35%), Query Frame = 1
Query:    1 KEYHERKLVRFTPQQVYSVVSDVANYKKFVPFCVDSRILRQVGPGSTTVDAELAVGFKVFTEKYTSRVTLKPPSVVAARAVDSRIFSELSSTWSFKPGPRDGTTYLSFDVEFEVKNPIAATAVNAFFEDVTQQQVKAFERRCKQLYG 441
            K Y+ER+L+ ++P+Q+Y VVS V +Y +FVP+CV S +LR+  P ++ ++AEL +GF++ +E+YTSRV L+ P +V +   +S +F  L STW   PGP   +T+LSF V+F   NP+ A     FF +V  + + AFE RCK LYG
Sbjct:  109 KAYNERRLIGYSPEQLYEVVSQVQHYHQFVPWCVGSNVLRR-SPDNSYLEAELQIGFQMISERYTSRVKLQAPHLVTSSVANSALFHHLESTWRLAPGPSPHSTWLSFSVDFAFLNPLYANIAQLFFSEVVTRMMGAFEGRCKHLYG 254          
The following BLAST results are available for this feature:
BLAST of jgi.p|Trimin1|156212 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
A0A835ZID9_9STRA2.240e-106100.00Polyketide_cyc domain-containing protein (Fragment... [more]
A0A6H5KIH8_9PHAE4.370e-4756.46EF-hand domain-containing protein n=1 Tax=Ectocarp... [more]
A0A5J4XII3_9CHLO3.030e-4046.00Coenzyme Q-binding COQ10 mitochondrial-like n=1 Ta... [more]
A0A8J9WPC4_9CHLO1.070e-3946.31Coenzyme Q-binding protein COQ10 homolog B, mitoch... [more]
A0A2V0PGC9_9CHLO3.710e-3946.00Polyketide_cyc domain-containing protein n=1 Tax=R... [more]
I0Z0V0_COCSC5.250e-3946.98Polyketide_cyc domain-containing protein n=1 Tax=C... [more]
A0A7J7PJE1_9CHLO1.220e-3845.58Polyketide_cyc domain-containing protein n=1 Tax=S... [more]
A0A2P6U320_CHLSO3.760e-3846.00Coenzyme Q-binding COQ10 mitochondrial-like n=1 Ta... [more]
A0A5A8EEH9_CAFRO1.890e-3745.27Polyketide_cyc domain-containing protein n=2 Tax=C... [more]
A0A383VYA6_TETOB3.340e-3744.90Polyketide_cyc domain-containing protein n=1 Tax=T... [more]

Pages

back to top
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
Contig_141contigContig_141:101172..101642 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Tribonema minus UTEX_B_31562021-06-17
Properties
Property NameValue
ProteomeIdTrimin1|156212|gw1.141.108.1
KEGG TC3.A.3.5
BRITEko00000,ko00001,ko01000
KEGG rclassRC00002
KEGG ReactionR00086
KEGG Pathwayko01524,ko04016,map01524,map04016
KEGG koko:K17686
EC3.6.3.54
DescriptionHeavy-metal-associated domain
COG categoryP
Max annot lvl3041|Chlorophyta
EggNOG OGsCOG2217@1|root,COG2867@1|root,KOG0207@2759|Eukaryota,KOG3177@2759|Eukaryota,37HKS@33090|Viridiplantae,34JKK@3041|Chlorophyta
Evalue2.38e-37
Seed ortholog554065.XP_005852165.1
Hectar predicted targeting categoryother localisation
Ec32 ortholog descriptionEF-hand domain pair
Ec32 orthologEc-04_002220.1
TranscriptId156534
TrackFilteredModels1
ProteinId156212
Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesTypePosition
jgi.p|Trimin1|156212gene_13361Tribonema minus UTEX_B_3156 geneContig_141 101172..101642 +


The following exon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
exon_13361_1exon_13361_1Tribonema minus UTEX_B_3156 exonContig_141 101172..101642 +


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
CDS_13361CDS_13361Tribonema minus UTEX_B_3156 CDSContig_141 101172..101642 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
jgi.p|Trimin1|156212Trimin1|156212|gw1.141.108.1Tribonema minus UTEX_B_3156 polypeptideContig_141 101172..101642 +


Sequences
The following sequences are available for this feature:

spliced messenger RNA

>mRNA_13361 ID=mRNA_13361|Name=jgi.p|Trimin1|156212|organism=Tribonema minus UTEX_B_3156 |type=mRNA|length=471bp|location=Sequence derived from alignment at Contig_141:101172..101642+ (Tribonema minus UTEX_B_3156 )|Notes=Excludes all bases but those of type(s): exon.  
AAGGAGTACCACGAGAGGAAGCTGGTGCGCTTCACGCCGCAGCAGGTCTA
CTCGGTGGTCAGCGACGTCGCCAACTACAAAAAGTTCGTCCCCTTCTGTG
TCGACAGCCGCATCCTGAGGCAGGTGGGCCCCGGGTCCACGACGGTGGAC
GCGGAGCTCGCCGTCGGCTTCAAGGTCTTCACGGAGAAGTACACAAGCAG
GGTCACTCTCAAACCTCCCAGCGTCGTCGCCGCGCGTGCAGTCGACAGCC
GCATCTTCAGCGAGCTGTCTTCCACCTGGAGCTTCAAGCCGGGCCCCCGA
GACGGCACCACGTACCTGTCCTTCGACGTCGAGTTCGAGGTCAAGAACCC
CATCGCGGCGACCGCCGTCAACGCGTTCTTCGAGGACGTCACGCAGCAGC
AGGTGAAGGCATTCGAGCGGCGGTGCAAGCAGCTGTACGGAGAGTCGAAC
AGAGAGAGCGAAGCTGCGGTG
back to top

protein sequence of jgi.p|Trimin1|156212

>Trimin1|156212|gw1.141.108.1 ID=Trimin1|156212|gw1.141.108.1|Name=jgi.p|Trimin1|156212|organism=Tribonema minus UTEX_B_3156 |type=polypeptide|length=157bp
KEYHERKLVRFTPQQVYSVVSDVANYKKFVPFCVDSRILRQVGPGSTTVD
AELAVGFKVFTEKYTSRVTLKPPSVVAARAVDSRIFSELSSTWSFKPGPR
DGTTYLSFDVEFEVKNPIAATAVNAFFEDVTQQQVKAFERRCKQLYGESN
RESEAAV
back to top

mRNA from alignment at Contig_141:101172..101642+

Legend: exonpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_13361 ID=mRNA_13361|Name=jgi.p|Trimin1|156212|organism=Tribonema minus UTEX_B_3156 |type=mRNA|length=471bp|location=Sequence derived from alignment at Contig_141:101172..101642+ (Tribonema minus UTEX_B_3156 )
AAGGAGTACCACGAGAGGAAGCTGGTGCGCTTCACGCCGCAGCAGGTCTA CTCGGTGGTCAGCGACGTCGCCAACTACAAAAAGTTCGTCCCCTTCTGTG TCGACAGCCGCATCCTGAGGCAGGTGGGCCCCGGGTCCACGACGGTGGAC GCGGAGCTCGCCGTCGGCTTCAAGGTCTTCACGGAGAAGTACACAAGCAG GGTCACTCTCAAACCTCCCAGCGTCGTCGCCGCGCGTGCAGTCGACAGCC GCATCTTCAGCGAGCTGTCTTCCACCTGGAGCTTCAAGCCGGGCCCCCGA GACGGCACCACGTACCTGTCCTTCGACGTCGAGTTCGAGGTCAAGAACCC CATCGCGGCGACCGCCGTCAACGCGTTCTTCGAGGACGTCACGCAGCAGC AGGTGAAGGCATTCGAGCGGCGGTGCAAGCAGCTGTACGGAGAGTCGAAC AGAGAGAGCGAAGCTGCGGTG
back to top

Coding sequence (CDS) from alignment at Contig_141:101172..101642+

>mRNA_13361 ID=mRNA_13361|Name=jgi.p|Trimin1|156212|organism=Tribonema minus UTEX_B_3156 |type=CDS|length=471bp|location=Sequence derived from alignment at Contig_141:101172..101642+ (Tribonema minus UTEX_B_3156 )
AAGGAGTACCACGAGAGGAAGCTGGTGCGCTTCACGCCGCAGCAGGTCTA
CTCGGTGGTCAGCGACGTCGCCAACTACAAAAAGTTCGTCCCCTTCTGTG
TCGACAGCCGCATCCTGAGGCAGGTGGGCCCCGGGTCCACGACGGTGGAC
GCGGAGCTCGCCGTCGGCTTCAAGGTCTTCACGGAGAAGTACACAAGCAG
GGTCACTCTCAAACCTCCCAGCGTCGTCGCCGCGCGTGCAGTCGACAGCC
GCATCTTCAGCGAGCTGTCTTCCACCTGGAGCTTCAAGCCGGGCCCCCGA
GACGGCACCACGTACCTGTCCTTCGACGTCGAGTTCGAGGTCAAGAACCC
CATCGCGGCGACCGCCGTCAACGCGTTCTTCGAGGACGTCACGCAGCAGC
AGGTGAAGGCATTCGAGCGGCGGTGCAAGCAGCTGTACGGAGAGTCGAAC
AGAGAGAGCGAAGCTGCGGTG
back to top